SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38401 1o96:C (3.1) BS01 AMP ? GO:0009055 ... P53570 12567183
    38402 1o96:C (3.1) BS02 FAD ? GO:0009055 ... P53570 12567183
    38403 1o96:D (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    38404 1o96:E (3.1) BS01 AMP ? GO:0009055 ... P53570 12567183
    38405 1o96:E (3.1) BS02 FAD ? GO:0009055 ... P53570 12567183
    38406 1o96:F (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    38407 1o96:Q (3.1) BS01 AMP ? GO:0009055 ... P53570 12567183
    38408 1o96:Z (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    38409 1o97:C (1.6) BS01 AMP ? GO:0009055 ... P53570 12567183
    38410 1o97:C (1.6) BS02 FAD ? GO:0009055 ... P53570 12567183
    38411 1o97:D (1.6) BS01 FAD ? GO:0009055 ... P53571 12567183
    38412 1o98:A (1.4) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    38413 1o98:A (1.4) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    38414 1o98:A (1.4) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    38415 1o99:A (2.65) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    38416 1o99:A (2.65) BS02 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    38417 1o9a:A (-1.00) BS01 peptide ? GO:0005576 ... P02751 12736686
    38418 1o9b:A (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    38419 1o9b:B (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    38420 1o9d:A (2.3) BS01 peptide ? GO:0005737 ... P93343 12606564
    38421 1o9e:A (2.6) BS01 FSC ? GO:0005737 ... P93343 12606564
    38422 1o9f:A (2.7) BS01 peptide ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    38423 1o9f:A (2.7) BS02 FSC ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    38424 1o9i:A (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38425 1o9i:A (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38426 1o9i:A (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38427 1o9i:A (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    38428 1o9i:A (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38429 1o9i:B (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38430 1o9i:B (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38431 1o9i:B (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38432 1o9i:B (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    38433 1o9i:B (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38434 1o9i:C (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38435 1o9i:C (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38436 1o9i:C (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38437 1o9i:C (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38438 1o9i:C (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    38439 1o9i:D (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38440 1o9i:D (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38441 1o9i:D (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38442 1o9i:D (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    38443 1o9i:D (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38444 1o9i:E (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38445 1o9i:E (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38446 1o9i:E (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38447 1o9i:E (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38448 1o9i:E (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    38449 1o9i:F (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38450 1o9i:F (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38451 1o9i:F (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    38452 1o9i:F (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    38453 1o9i:F (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    38454 1o9j:A (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    38455 1o9j:B (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    38456 1o9j:C (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    38457 1o9j:D (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    38458 1o9k:A (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38459 1o9k:B (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38460 1o9k:C (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38461 1o9k:D (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38462 1o9k:E (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38463 1o9k:F (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38464 1o9k:G (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38465 1o9k:H (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    38466 1o9l:A (2.4) BS01 EMT 2.8.3.5 GO:0005739 ... Q29551 N/A
    38467 1o9o:A (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    38468 1o9o:B (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    38469 1o9s:A (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    38470 1o9s:A (1.75) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    38471 1o9s:B (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    38472 1o9s:B (1.75) BS02 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    38473 1o9s:B (1.75) BS03 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    38474 1o9t:A (2.9) BS01 MET 2.5.1.6 GO:0000287 ... P13444 12888348
    38475 1o9t:A (2.9) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    38476 1o9t:A (2.9) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    38477 1o9t:B (2.9) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    38478 1o9t:B (2.9) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    38479 1o9u:A (2.4) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0004672 ... P49841 12554650
    38480 1o9u:A (2.4) BS02 ADZ 2.7.11.1
    2.7.11.26
    GO:0004672 ... P49841 12554650
    38481 1o9v:A (1.75) BS01 SNG ? GO:0009289 ... Q99003 12864853
    38482 1o9w:A (1.65) BS01 NAG ? GO:0009289 ... Q99003 12864853 MOAD: Kd=1.18mM
    38483 1o9x:A (3.2) BS01 HEM ? GO:0003677 ... P02768 12846933
    38484 1oa0:A (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 12764602
    38485 1oa0:A (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    38486 1oa0:B (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 12764602
    38487 1oa0:B (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    38488 1oa1:A (1.55) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 12764602
    38489 1oa1:A (1.55) BS02 SF3 1.7.99.1 GO:0003824 ... P31101 12764602
    38490 1oa7:A (2.0) BS01 BGC 3.2.1.4 GO:0005975 ... Q8J0K8 12767825
    38491 1oa7:A (2.0) BS02 BGC 3.2.1.4 GO:0005975 ... Q8J0K8 12767825
    38492 1oaa:A (1.25) BS01 OAA 1.1.1.153 GO:0004757 ... Q64105 9405351
    38493 1oaa:A (1.25) BS02 NAP 1.1.1.153 GO:0004757 ... Q64105 9405351
    38494 1oab:A (1.9) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    38495 1oab:A (1.9) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    38496 1oab:B (1.9) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    38497 1oab:B (1.9) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    38498 1oac:A (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46883 8591028
    38499 1oac:A (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    38500 1oac:A (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    38501 1oac:B (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46883 8591028
    38502 1oac:B (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    38503 1oac:B (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    38504 1oad:A (1.5) BS01 MN 5.3.1.5 GO:0000287 ... P24300 12777803
    38505 1oad:A (1.5) BS02 MG 5.3.1.5 GO:0000287 ... P24300 12777803
    38506 1oad:A (1.5) BS03 MQD 5.3.1.5 GO:0000287 ... P24300 12777803
    38507 1oad:B (1.5) BS01 MN 5.3.1.5 GO:0000287 ... P24300 12777803
    38508 1oad:B (1.5) BS02 MG 5.3.1.5 GO:0000287 ... P24300 12777803
    38509 1oad:B (1.5) BS03 MQD 5.3.1.5 GO:0000287 ... P24300 12777803
    38510 1oae:A (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    38511 1oae:B (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    38512 1oaf:A (1.4) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    38513 1oaf:A (1.4) BS02 ASC 1.11.1.11 GO:0004601 ... Q43758 12640445
    38514 1oag:A (1.75) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    38515 1oah:A (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38516 1oah:A (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38517 1oah:A (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38518 1oah:A (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38519 1oah:A (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38520 1oah:A (2.3) BS06 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38521 1oah:A (2.3) BS07 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38522 1oah:A (2.3) BS08 ZN 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38523 1oah:A (2.3) BS09 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38524 1oah:B (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38525 1oah:B (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38526 1oah:B (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38527 1oah:B (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38528 1oah:B (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38529 1oah:B (2.3) BS06 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38530 1oah:B (2.3) BS07 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38531 1oah:B (2.3) BS08 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    38532 1oai:A (1.0) BS01 peptide ? GO:0005634 ... Q9UBU9 12581645
    38533 1oaj:A (1.73) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 12595249
    38534 1oaj:A (1.73) BS02 CU 1.15.1.1 GO:0004784 ... P00446 12595249
    38535 1oal:A (1.5) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 12595249
    38536 1oal:A (1.5) BS02 CU 1.15.1.1 GO:0004784 ... P00446 12595249
    38537 1oan:A (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    38538 1oan:B (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    38539 1oao:A (1.9) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12627225
    38540 1oao:A (1.9) BS02 XCC 1.2.7.4 GO:0003824 ... P27989 12627225
    38541 1oao:A (1.9) BS03 FE2 1.2.7.4 GO:0003824 ... P27989 12627225
    38542 1oao:A (1.9) BS04 SF4 1.2.7.4 GO:0003824 ... P27989 12627225
    38543 1oao:B (1.9) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12627225
    38544 1oao:B (1.9) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12627225
    38545 1oao:B (1.9) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12627225
    38546 1oao:B (1.9) BS04 BCT 1.2.7.4 GO:0003824 ... P27989 12627225
    38547 1oao:B (1.9) BS05 FE2 1.2.7.4 GO:0003824 ... P27989 12627225
    38548 1oao:C (1.9) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 12627225
    38549 1oao:C (1.9) BS02 ZN 2.3.1.169 GO:0003824 ... P27988 12627225
    38550 1oao:D (1.9) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 12627225
    38551 1oar:H (2.23) BS01 AZN N/A N/A N/A 12610298 MOAD: Kd=40nM
    38552 1oar:I (2.23) BS01 AZN N/A N/A N/A 12610298 MOAD: Kd=40nM
    38553 1oar:J (2.23) BS01 AZN N/A N/A N/A 12610298 MOAD: Kd=40nM
    38554 1oar:K (2.23) BS01 AZN N/A N/A N/A 12610298 MOAD: Kd=40nM
    38555 1oar:L (2.23) BS01 AZN ? GO:0006955 ... P01724 12610298
    38556 1oar:M (2.23) BS01 AZN ? GO:0006955 ... P01724 12610298
    38557 1oar:N (2.23) BS01 AZN ? GO:0006955 ... P01724 12610298
    38558 1oar:O (2.23) BS01 AZN ? GO:0006955 ... P01724 12610298
    38559 1oas:A (2.2) BS01 PLP 2.5.1.47 GO:0003824 ... P0A1E3 9761678
    38560 1oas:B (2.2) BS01 PLP 2.5.1.47 GO:0003824 ... P0A1E3 9761678
    38561 1oat:A (2.5) BS01 PLP 2.6.1.13 GO:0004587 ... P04181 9514741
    38562 1oat:B (2.5) BS01 PLP 2.6.1.13 GO:0004587 ... P04181 9514741
    38563 1oat:C (2.5) BS01 PLP 2.6.1.13 GO:0004587 ... P04181 9514741
    38564 1oau:H (1.8) BS01 DNF N/A N/A N/A 12610298
    38565 1oau:J (1.8) BS01 DNF N/A N/A N/A 12610298
    38566 1oau:L (1.8) BS01 DNF ? GO:0006955 ... P01724 12610298
    38567 1oau:M (1.8) BS01 peptide ? GO:0006955 ... P01724 12610298
    38568 1oau:N (1.8) BS01 DNF ? GO:0006955 ... P01724 12610298
    38569 1oau:O (1.8) BS01 peptide ? GO:0006955 ... P01724 12610298
    38570 1oax:H (2.67) BS01 ANQ N/A N/A N/A 12610298
    38571 1oax:J (2.67) BS01 ANQ N/A N/A N/A 12610298
    38572 1oay:H (2.66) BS01 FUR N/A N/A N/A 12610298
    38573 1oay:J (2.66) BS01 FUR N/A N/A N/A 12610298
    38574 1oay:L (2.66) BS01 FUR ? GO:0006955 ... P01724 12610298
    38575 1oay:N (2.66) BS01 FUR ? GO:0006955 ... P01724 12610298
    38576 1ob0:A (1.83) BS01 CA 3.2.1.1 GO:0004553 ... P06278 12540849
    38577 1ob0:A (1.83) BS02 CA 3.2.1.1 GO:0004553 ... P06278 12540849
    38578 1ob0:A (1.83) BS03 CA 3.2.1.1 GO:0004553 ... P06278 12540849
    38579 1ob2:A (3.35) BS01 rna 3.6.1.48 GO:0000287 ... P0CE48 N/A
    38580 1ob2:A (3.35) BS02 GLC 3.6.1.48 GO:0000287 ... P0CE48 N/A
    38581 1ob2:A (3.35) BS03 FRU 3.6.1.48 GO:0000287 ... P0CE48 N/A
    38582 1ob2:A (3.35) BS04 KIR 3.6.1.48 GO:0000287 ... P0CE48 N/A
    38583 1ob2:A (3.35) BS05 GNP 3.6.1.48 GO:0000287 ... P0CE48 N/A
    38584 1ob2:A (3.35) BS06 MG 3.6.1.48 GO:0000287 ... P0CE48 N/A
    38585 1ob5:A (3.1) BS01 rna 3.6.1.48 GO:0000287 ... Q01698 16257965
    38586 1ob5:A (3.1) BS02 rna 3.6.1.48 GO:0000287 ... Q01698 16257965
    38587 1ob5:A (3.1) BS03 GNP 3.6.1.48 GO:0000287 ... Q01698 16257965
    38588 1ob5:A (3.1) BS04 MG 3.6.1.48 GO:0000287 ... Q01698 16257965
    38589 1ob5:A (3.1) BS05 ENX 3.6.1.48 GO:0000287 ... Q01698 16257965
    38590 1ob5:C (3.1) BS01 rna 3.6.1.48 GO:0000287 ... Q01698 16257965
    38591 1ob5:C (3.1) BS02 rna 3.6.1.48 GO:0000287 ... Q01698 16257965
    38592 1ob5:C (3.1) BS03 GNP 3.6.1.48 GO:0000287 ... Q01698 16257965
    38593 1ob5:C (3.1) BS04 MG 3.6.1.48 GO:0000287 ... Q01698 16257965
    38594 1ob5:C (3.1) BS05 ENX 3.6.1.48 GO:0000287 ... Q01698 16257965
    38595 1ob5:E (3.1) BS01 rna 3.6.1.48 GO:0000287 ... Q01698 16257965
    38596 1ob5:E (3.1) BS02 rna 3.6.1.48 GO:0000287 ... Q01698 16257965
    38597 1ob5:E (3.1) BS03 GNP 3.6.1.48 GO:0000287 ... Q01698 16257965
    38598 1ob5:E (3.1) BS04 MG 3.6.1.48 GO:0000287 ... Q01698 16257965
    38599 1ob5:E (3.1) BS05 ENX 3.6.1.48 GO:0000287 ... Q01698 16257965
    38600 1oba:A (2.45) BS01 CHT 3.2.1.17 GO:0003796 ... P15057 14527392 MOAD: Kd=3.6mM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).