SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    385801 5nkw:A (1.48) BS01 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385802 5nkw:A (1.48) BS02 BMA 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385803 5nkw:A (1.48) BS03 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385804 5nkw:A (1.48) BS04 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385805 5nkw:A (1.48) BS05 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385806 5nkw:A (1.48) BS06 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385807 5nkw:A (1.48) BS07 BMA 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385808 5nky:A (2.096) BS01 peptide ? GO:0003677 ... Q9PTN2 28399453
    385809 5nky:A (2.096) BS02 91W ? GO:0003677 ... Q9PTN2 28399453
    385810 5nl0:A (5.4) BS01 dna ? GO:0000786 ... P84233 28475873
    385811 5nl0:A (5.4) BS02 dna ? GO:0000786 ... P84233 28475873
    385812 5nl0:B (5.4) BS01 dna ? GO:0000786 ... P62799 28475873
    385813 5nl0:B (5.4) BS02 dna ? GO:0000786 ... P62799 28475873
    385814 5nl0:C (5.4) BS01 dna ? GO:0000786 ... P06897 28475873
    385815 5nl0:C (5.4) BS02 dna ? GO:0000786 ... P06897 28475873
    385816 5nl0:D (5.4) BS01 dna ? GO:0000786 ... P02281 28475873
    385817 5nl0:D (5.4) BS02 dna ? GO:0000786 ... P02281 28475873
    385818 5nl0:E (5.4) BS01 dna ? GO:0000786 ... P84233 28475873
    385819 5nl0:E (5.4) BS02 dna ? GO:0000786 ... P84233 28475873
    385820 5nl0:F (5.4) BS01 dna ? GO:0000786 ... P62799 28475873
    385821 5nl0:F (5.4) BS02 dna ? GO:0000786 ... P62799 28475873
    385822 5nl0:G (5.4) BS01 dna ? GO:0000786 ... P06897 28475873
    385823 5nl0:G (5.4) BS02 dna ? GO:0000786 ... P06897 28475873
    385824 5nl0:H (5.4) BS01 dna ? GO:0000786 ... P02281 28475873
    385825 5nl0:H (5.4) BS02 dna ? GO:0000786 ... P02281 28475873
    385826 5nl0:K (5.4) BS01 dna ? GO:0000786 ... P84233 28475873
    385827 5nl0:K (5.4) BS02 dna ? GO:0000786 ... P84233 28475873
    385828 5nl0:L (5.4) BS01 dna ? GO:0000786 ... P62799 28475873
    385829 5nl0:L (5.4) BS02 dna ? GO:0000786 ... P62799 28475873
    385830 5nl0:M (5.4) BS01 dna ? GO:0000786 ... P06897 28475873
    385831 5nl0:M (5.4) BS02 dna ? GO:0000786 ... P06897 28475873
    385832 5nl0:N (5.4) BS01 dna ? GO:0000786 ... P02281 28475873
    385833 5nl0:N (5.4) BS02 dna ? GO:0000786 ... P02281 28475873
    385834 5nl0:Z (5.4) BS01 dna ? GO:0000786 ... P22844 28475873
    385835 5nl1:A (2.5) BS01 peptide ? GO:0001726 ... P26039 30673614
    385836 5nl1:A (2.5) BS02 peptide ? GO:0001726 ... P26039 30673614
    385837 5nl1:A (2.5) BS03 peptide ? GO:0001726 ... P26039 30673614
    385838 5nl1:B (2.5) BS01 peptide ? GO:0001726 ... P26039 30673614
    385839 5nl1:B (2.5) BS02 peptide ? GO:0001726 ... P26039 30673614
    385840 5nl1:B (2.5) BS03 peptide ? GO:0001726 ... P26039 30673614
    385841 5nl1:C (2.5) BS01 peptide ? GO:0001726 ... P26039 30673614
    385842 5nl1:D (2.5) BS01 peptide ? GO:0001726 ... P26039 30673614
    385843 5nl1:E (2.5) BS01 peptide ? GO:0001726 ... P26039 30673614
    385844 5nl1:E (2.5) BS02 peptide ? GO:0001726 ... P26039 30673614
    385845 5nl1:F (2.5) BS01 peptide ? GO:0001726 ... P26039 30673614
    385846 5nl1:F (2.5) BS02 peptide ? GO:0001726 ... P26039 30673614
    385847 5nl4:B (1.32) BS01 ZN ? N/A P0CG48 29266436
    385848 5nl5:B (1.96) BS01 ZN ? N/A P0CG47 29266436
    385849 5nl7:A (2.48) BS01 CA ? N/A C4LWU6 32848067
    385850 5nl9:A (1.9) BS01 ZN ? GO:0000976 ... Q72QS5 29146596
    385851 5nl9:B (1.9) BS01 ZN ? GO:0000976 ... Q72QS5 29146596
    385852 5nlc:A (1.9) BS01 PO4 ? GO:0030170 ... Q31LH9 28914444
    385853 5nld:B (0.96) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385854 5nld:B (0.96) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385855 5nle:A (1.845) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385856 5nle:A (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385857 5nle:B (1.845) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385858 5nle:B (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385859 5nle:C (1.845) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385860 5nle:C (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385861 5nle:D (1.845) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385862 5nle:D (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385863 5nlf:B (1.5) BS01 ZN ? N/A P0CG48 29266436
    385864 5nlh:A (1.1) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385865 5nlh:A (1.1) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385866 5nli:B (1.53) BS01 ZN ? N/A P0CG48 29266436
    385867 5nlj:B (1.53) BS01 ZN ? N/A P0CG47 29266436
    385868 5nlj:B (1.53) BS02 ZN ? N/A P0CG47 29266436
    385869 5nlj:B (1.53) BS03 ETF ? N/A P0CG47 29266436
    385870 5nlk:A (1.8) BS01 92E 2.3.1.-
    2.3.1.48
    N/A Q92793 29532017 MOAD: Kd=0.035uM
    BindingDB: Kd=35nM, IC50=19nM
    385871 5nll:A (1.75) BS01 FMN ? GO:0009055 ... P00322 9063874
    385872 5nlm:A (2.14) BS01 IOS 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385873 5nlm:A (2.14) BS02 MG 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385874 5nlm:A (2.14) BS03 MG 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385875 5nlm:A (2.14) BS04 MG 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385876 5nlm:A (2.14) BS05 MG 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385877 5nlm:B (2.14) BS01 IOS 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385878 5nlm:B (2.14) BS02 MG 2.4.1.- GO:0008194 ... A0A2R2JFJ4 29309053
    385879 5nln:A (1.9) BS01 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385880 5nln:A (1.9) BS02 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385881 5nln:A (1.9) BS03 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385882 5nln:A (1.9) BS04 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385883 5nlo:A (1.33) BS01 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385884 5nlo:A (1.33) BS02 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385885 5nlo:A (1.33) BS03 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385886 5nlo:A (1.33) BS04 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385887 5nlp:A (1.59) BS01 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385888 5nlp:A (1.59) BS02 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385889 5nlp:A (1.59) BS03 XYS 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385890 5nlp:A (1.59) BS04 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385891 5nlp:A (1.59) BS05 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385892 5nlq:A (1.5) BS01 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385893 5nlq:A (1.5) BS02 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385894 5nlq:A (1.5) BS03 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385895 5nlq:A (1.5) BS04 XYP 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385896 5nlq:A (1.5) BS05 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385897 5nlr:A (2.0) BS01 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385898 5nlr:A (2.0) BS02 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385899 5nlr:A (2.0) BS03 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385900 5nlr:A (2.0) BS04 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385901 5nlr:A (2.0) BS05 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385902 5nls:A (1.75) BS01 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385903 5nls:A (1.75) BS02 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385904 5nls:A (1.75) BS03 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385905 5nls:A (1.75) BS04 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385906 5nls:A (1.75) BS05 BGC 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385907 5nls:A (1.75) BS06 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    385908 5nlt:A (1.9) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 29057953
    385909 5nlt:B (1.9) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 29057953
    385910 5nlt:C (1.9) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 29057953
    385911 5nlt:D (1.9) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 29057953
    385912 5nlt:E (1.9) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 29057953
    385913 5nlt:F (1.9) BS01 CU 3.2.1.4 GO:0004497 ... A0A223GEC9 29057953
    385914 5nlx:A (2.14) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385915 5nlx:A (2.14) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385916 5nly:B (2.0) BS01 PO4 ? GO:0005085 ... Q6DN90 28923919
    385917 5nm1:A (2.099) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385918 5nm1:A (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385919 5nm1:B (2.099) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385920 5nm1:B (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385921 5nm1:C (2.099) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385922 5nm1:C (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385923 5nm1:D (2.099) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385924 5nm1:D (2.099) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385925 5nm2:A (1.948) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385926 5nm2:A (1.948) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385927 5nm2:A (1.948) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385928 5nm2:A (1.948) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385929 5nm3:A (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    385930 5nm3:B (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    385931 5nm3:C (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    385932 5nm3:D (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    385933 5nm4:A (1.7) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385934 5nm4:A (1.7) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385935 5nm4:A (1.7) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    28912485
    385936 5nm5:A (2.05) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28912485
    385937 5nm5:A (2.05) BS02 LOC 3.6.5.- GO:0000226 ... P81947 28912485
    385938 5nm5:B (2.05) BS01 GDP ? GO:0000226 ... Q6B856 28912485
    385939 5nm5:B (2.05) BS02 LOC ? GO:0000226 ... Q6B856 28912485 BindingDB: IC50=800nM, Ki=780nM
    385940 5nm7:A (1.72) BS01 GLY ? N/A A0A1S5NV50 29109551
    385941 5nm7:A (1.72) BS02 GLY ? N/A A0A1S5NV50 29109551
    385942 5nm7:G (1.72) BS01 GLY ? N/A A0A1S5NV50 29109551
    385943 5nm7:G (1.72) BS02 GLY ? N/A A0A1S5NV50 29109551
    385944 5nm7:G (1.72) BS03 GLY ? N/A A0A1S5NV50 29109551
    385945 5nm8:A (1.93) BS01 PLP ? GO:0030170 ... Q31LH9 28914444
    385946 5nm8:B (1.93) BS01 PLP ? GO:0030170 ... Q31LH9 28914444
    385947 5nm9:A (2.43) BS01 dna ? GO:0005667 ... B3S7S5 29234012
    385948 5nm9:A (2.43) BS02 ZN ? GO:0005667 ... B3S7S5 29234012
    385949 5nm9:B (2.43) BS01 ZN ? GO:0005667 ... B3S7S5 29234012
    385950 5nma:A (2.8) BS01 peptide ? GO:0003677 ... Q9PTN2 28399453
    385951 5nma:A (2.8) BS02 9CW ? GO:0003677 ... Q9PTN2 28399453
    385952 5nmb:A2 (2.5) BS01 peptide ? GO:0003677 ... Q9PTN2 28399453
    385953 5nmb:A2 (2.5) BS02 9CZ ? GO:0003677 ... Q9PTN2 28399453
    385954 5nmc:A (1.7) BS01 ZN ? N/A P0CG48 29266436
    385955 5nmc:B (1.7) BS01 ZN ? N/A P0CG48 29266436
    385956 5nmc:B (1.7) BS02 ZN ? N/A P0CG48 29266436
    385957 5nmc:C (1.7) BS01 ZN ? N/A P0CG48 29266436
    385958 5nme:A (2.94) BS01 peptide ? N/A P04439 29209312
    385959 5nme:D (2.94) BS01 peptide N/A N/A N/A 29209312
    385960 5nme:E (2.94) BS01 peptide N/A N/A N/A 29209312
    385961 5nme:F (2.94) BS01 peptide ? N/A P04439 29209312
    385962 5nme:I (2.94) BS01 peptide N/A N/A N/A 29209312
    385963 5nme:J (2.94) BS01 peptide N/A N/A N/A 29209312
    385964 5nmf:A (2.89) BS01 peptide ? N/A P04439 29209312
    385965 5nmf:D (2.89) BS01 peptide N/A N/A N/A 29209312
    385966 5nmf:E (2.89) BS01 peptide N/A N/A N/A 29209312
    385967 5nmf:F (2.89) BS01 peptide ? N/A P04439 29209312
    385968 5nmf:I (2.89) BS01 peptide N/A N/A N/A 29209312
    385969 5nmf:J (2.89) BS01 peptide N/A N/A N/A 29209312
    385970 5nmg:A (2.75) BS01 peptide ? N/A P04439 29209312
    385971 5nmg:D (2.75) BS01 peptide N/A N/A N/A 29209312
    385972 5nmg:E (2.75) BS01 peptide N/A N/A N/A 29209312
    385973 5nmg:F (2.75) BS01 peptide ? N/A P04439 29209312
    385974 5nmg:I (2.75) BS01 peptide N/A N/A N/A 29209312
    385975 5nmg:J (2.75) BS01 peptide N/A N/A N/A 29209312
    385976 5nmh:A (1.55) BS01 peptide ? N/A P04439 29209312
    385977 5nmi:A (3.5) BS01 peptide ? GO:0005739 ... P31800 27412848
    385978 5nmi:C (3.5) BS01 HEM ? GO:0005739 ... P00157 27412848
    385979 5nmi:C (3.5) BS02 HEM ? GO:0005739 ... P00157 27412848
    385980 5nmi:C (3.5) BS03 MJM ? GO:0005739 ... P00157 27412848
    385981 5nmi:D (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27412848
    385982 5nmi:E (3.5) BS01 FES 7.1.1.8 GO:0005739 ... P13272 27412848
    385983 5nmi:J (3.5) BS01 peptide ? GO:0005739 ... P00130 27412848
    385984 5nmi:N (3.5) BS01 peptide ? GO:0005739 ... P31800 27412848
    385985 5nmi:P (3.5) BS01 HEM ? GO:0005739 ... P00157 27412848
    385986 5nmi:P (3.5) BS02 HEM ? GO:0005739 ... P00157 27412848
    385987 5nmi:P (3.5) BS03 MJM ? GO:0005739 ... P00157 27412848
    385988 5nmi:Q (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27412848
    385989 5nmi:W (3.5) BS01 peptide ? GO:0005739 ... P00130 27412848
    385990 5nmj:A (1.399) BS01 GLC N/A GO:0030246 ... N/A 29248541
    385991 5nmj:A (1.399) BS02 GAL N/A GO:0030246 ... N/A 29248541
    385992 5nmk:A (1.66) BS01 peptide ? N/A P04439 29209312
    385993 5nmm:A (2.02) BS01 8Z5 2.7.11.21 N/A P53350 31685831
    385994 5nmp:A (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    385995 5nmp:B (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    385996 5nmp:C (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    385997 5nmp:D (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    385998 5nmp:E (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    385999 5nmp:F (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577
    386000 5nmp:G (2.65) BS01 MN ? GO:0004061 ... Q8XYC3 30166577

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).