SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    386401 5nq3:A (1.57) BS01 peptide ? N/A B1PJV3 29772011
    386402 5nq3:D (1.57) BS01 peptide ? N/A B1PJV3 29772011
    386403 5nq5:A (2.85) BS01 952 2.7.4.9 GO:0000287 ... P9WKE1 29510037
    386404 5nq7:A (2.75) BS01 CU 1.10.3.2 GO:0005507 ... D7F485 29055703
    386405 5nq7:A (2.75) BS02 CU 1.10.3.2 GO:0005507 ... D7F485 29055703
    386406 5nq7:A (2.75) BS03 CU 1.10.3.2 GO:0005507 ... D7F485 29055703
    386407 5nq7:A (2.75) BS04 CU 1.10.3.2 GO:0005507 ... D7F485 29055703
    386408 5nq8:A (2.0) BS01 CU ? GO:0005507 ... Q96TR6 29055703
    386409 5nq8:A (2.0) BS02 CU ? GO:0005507 ... Q96TR6 29055703
    386410 5nq8:A (2.0) BS03 CU ? GO:0005507 ... Q96TR6 29055703
    386411 5nq8:A (2.0) BS04 CU ? GO:0005507 ... Q96TR6 29055703
    386412 5nq9:A (2.72) BS01 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386413 5nq9:A (2.72) BS02 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386414 5nq9:A (2.72) BS03 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386415 5nq9:A (2.72) BS04 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386416 5nq9:C (2.72) BS01 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386417 5nq9:C (2.72) BS02 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386418 5nq9:C (2.72) BS03 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386419 5nq9:C (2.72) BS04 CU 1.10.3.2 GO:0005507 ... A0A2H4A2Q2 29055703
    386420 5nqc:A (2.0) BS01 1KP 2.7.11.1 GO:0004672 ... P68400 N/A
    386421 5nqc:A (2.0) BS02 1KP 2.7.11.1 GO:0004672 ... P68400 N/A
    386422 5nqd:A (2.2) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386423 5nqd:A (2.2) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386424 5nqd:A (2.2) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386425 5nqd:B (2.2) BS01 FES 1.20.98.1 GO:0051537 ... L0NMC5 N/A
    386426 5nqd:C (2.2) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386427 5nqd:C (2.2) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386428 5nqd:C (2.2) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386429 5nqd:D (2.2) BS01 FES 1.20.98.1 GO:0051537 ... L0NMC5 N/A
    386430 5nqd:E (2.2) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386431 5nqd:E (2.2) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386432 5nqd:E (2.2) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386433 5nqd:F (2.2) BS01 FES 1.20.98.1 GO:0051537 ... L0NMC5 N/A
    386434 5nqd:G (2.2) BS01 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386435 5nqd:G (2.2) BS02 MGD 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386436 5nqd:G (2.2) BS03 F3S 1.20.98.1 GO:0003954 ... Q6VAL8 N/A
    386437 5nqd:H (2.2) BS01 FES 1.20.98.1 GO:0051537 ... L0NMC5 N/A
    386438 5nqe:A (2.71) BS01 94Z 2.4.2.- GO:0003950 ... Q460N5 28495083
    386439 5nqe:B (2.71) BS01 94Z 2.4.2.- GO:0003950 ... Q460N5 28495083
    386440 5nqk:A (3.25) BS01 peptide ? N/A P01848 N/A
    386441 5nqk:B (3.25) BS01 peptide ? GO:0002250 ... A0A075B6N1 N/A
    386442 5nqk:H (3.25) BS01 peptide ? N/A P04439 N/A
    386443 5nqm:A (1.59) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386444 5nqm:A (1.59) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386445 5nqm:A (1.59) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386446 5nqm:A (1.59) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386447 5nqn:A (1.62) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386448 5nqn:A (1.62) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386449 5nqn:A (1.62) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386450 5nqn:A (1.62) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386451 5nqn:A (1.62) BS05 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386452 5nqn:A (1.62) BS06 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386453 5nqn:A (1.62) BS07 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386454 5nqn:A (1.62) BS08 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386455 5nqn:A (1.62) BS09 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386456 5nqn:A (1.62) BS10 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386457 5nqn:A (1.62) BS11 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386458 5nqn:A (1.62) BS12 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386459 5nqn:A (1.62) BS13 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386460 5nqn:A (1.62) BS14 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386461 5nqn:A (1.62) BS15 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386462 5nqo:A (1.15) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386463 5nqo:A (1.15) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386464 5nqo:A (1.15) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386465 5nqo:A (1.15) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386466 5nqo:A (1.15) BS05 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386467 5nqo:A (1.15) BS06 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386468 5nqo:A (1.15) BS07 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386469 5nqo:A (1.15) BS08 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386470 5nqo:A (1.15) BS09 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386471 5nqo:A (1.15) BS10 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386472 5nqo:A (1.15) BS11 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386473 5nqo:A (1.15) BS12 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386474 5nqo:A (1.15) BS13 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386475 5nqo:A (1.15) BS14 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386476 5nqo:A (1.15) BS15 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386477 5nqo:A (1.15) BS16 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    386478 5nqq:A (1.872) BS01 NAI 1.1.1.27 GO:0003824 ... P13491 28691704
    386479 5nqq:B (1.872) BS01 NAI 1.1.1.27 GO:0003824 ... P13491 28691704
    386480 5nqq:C (1.872) BS01 NAI 1.1.1.27 GO:0003824 ... P13491 28691704
    386481 5nqq:C (1.872) BS02 OAA 1.1.1.27 GO:0003824 ... P13491 28691704 MOAD: Ki=2.3mM
    386482 5nqq:D (1.872) BS01 NAI 1.1.1.27 GO:0003824 ... P13491 28691704
    386483 5nqq:D (1.872) BS02 OAA 1.1.1.27 GO:0003824 ... P13491 28691704 MOAD: Ki=2.3mM
    386484 5nqr:A (2.2) BS01 958 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 29343827 MOAD: ic50=70nM
    386485 5nqr:A (2.2) BS02 958 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 29343827 MOAD: ic50=70nM
    386486 5nqr:A (2.2) BS03 958 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 29343827 MOAD: ic50=70nM
    386487 5nqr:B (2.2) BS01 958 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 29343827
    386488 5nqr:B (2.2) BS02 958 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 29343827
    386489 5nqr:B (2.2) BS03 958 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 29343827
    386490 5nqt:A (2.15) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28912485
    386491 5nqt:B (2.15) BS01 GDP ? GO:0000226 ... Q6B856 28912485
    386492 5nqu:A (1.8) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28912485
    386493 5nqu:B (1.8) BS01 GDP ? GO:0000226 ... Q6B856 28912485
    386494 5nqv:A (1.95) BS01 peptide ? GO:0006355 ... Q94AI7 28698367
    386495 5nqv:B (1.95) BS01 peptide ? GO:0006355 ... Q94AI7 28698367
    386496 5nqv:C (1.95) BS01 peptide ? GO:0006355 ... Q94AI7 28698367
    386497 5nqv:D (1.95) BS01 peptide ? GO:0006355 ... Q94AI7 28698367
    386498 5nqw:A (3.4) BS01 MAN ? N/A P01854 29295972
    386499 5nqz:A (1.63) BS01 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386500 5nqz:A (1.63) BS02 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386501 5nqz:A (1.63) BS03 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386502 5nqz:A (1.63) BS04 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386503 5nqz:B (1.63) BS01 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386504 5nqz:B (1.63) BS02 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386505 5nqz:B (1.63) BS03 ZN ? GO:0005515 ... P13415
    Q9JXV4
    29535307
    386506 5nr2:A (2.78) BS01 95B ? GO:0006826 ... Q05098 31413254
    386507 5nr3:A (2.3) BS01 95E 2.1.1.37 N/A Q9UBC3 N/A
    386508 5nr3:B (2.3) BS01 95E 2.1.1.37 N/A Q9UBC3 N/A
    386509 5nr7:A (2.35) BS01 YUI 2.7.4.9 GO:0000287 ... P9WKE1 29510037 MOAD: ic50=0.95uM
    386510 5nr7:B (2.35) BS01 YUI 2.7.4.9 GO:0000287 ... P9WKE1 29510037 MOAD: ic50=0.95uM
    386511 5nr8:A (1.349) BS01 95N 3.2.1.14 GO:0004553 ... Q13231 29283260 MOAD: ic50=175nM
    BindingDB: IC50=175nM
    386512 5nra:A (1.267) BS01 95K 3.2.1.14 GO:0004553 ... Q13231 29283260 MOAD: ic50=123nM
    386513 5nrb:A (2.24) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 28960760
    386514 5nrb:A (2.24) BS02 CO 2.4.1.87 GO:0005975 ... P14769 28960760
    386515 5nrb:A (2.24) BS03 GDU 2.4.1.87 GO:0005975 ... P14769 28960760
    386516 5nrb:B (2.24) BS01 GDU 2.4.1.87 GO:0005975 ... P14769 28960760
    386517 5nrd:A (2.12) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 28960760
    386518 5nrd:A (2.12) BS02 CO 2.4.1.87 GO:0005975 ... P14769 28960760
    386519 5nrd:A (2.12) BS03 GDU 2.4.1.87 GO:0005975 ... P14769 28960760
    386520 5nrd:B (2.12) BS01 GDU 2.4.1.87 GO:0005975 ... P14769 28960760
    386521 5nre:A (1.98) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 28960760
    386522 5nre:A (1.98) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 28960760
    386523 5nrf:A (1.447) BS01 95Q 3.2.1.14 GO:0004553 ... Q13231 29283260 MOAD: ic50=163nM
    BindingDB: IC50=163nM
    386524 5nrg:2 (3.442) BS01 rna ? GO:0003735 ... Q2FUQ0 28973455
    386525 5nrg:3 (3.442) BS01 rna ? GO:0003735 ... Q2FXQ0 28973455
    386526 5nrg:3 (3.442) BS02 MN ? GO:0003735 ... Q2FXQ0 28973455
    386527 5nrg:A (3.442) BS01 rna ? GO:0002181 ... P60430 28973455
    386528 5nrg:B (3.442) BS01 rna ? GO:0003735 ... Q2FW06 28973455
    386529 5nrg:C (3.442) BS01 rna ? GO:0003735 ... Q2FW07 28973455
    386530 5nrg:D (3.442) BS01 rna ? GO:0000049 ... Q2FW18 28973455
    386531 5nrg:D (3.442) BS02 rna ? GO:0000049 ... Q2FW18 28973455
    386532 5nrg:E (3.442) BS01 rna ? GO:0002181 ... Q2FW21 28973455
    386533 5nrg:G (3.442) BS01 rna ? GO:0003729 ... Q2FW38 28973455
    386534 5nrg:H (3.442) BS01 rna ? GO:0003735 ... Q2FW16 28973455
    386535 5nrg:I (3.442) BS01 rna ? GO:0003735 ... P0A0F8 28973455
    386536 5nrg:J (3.442) BS01 rna ? GO:0000049 ... Q2FW13 28973455
    386537 5nrg:J (3.442) BS02 rna ? GO:0000049 ... Q2FW13 28973455
    386538 5nrg:K (3.442) BS01 rna ? GO:0003735 ... Q2FW33 28973455
    386539 5nrg:L (3.442) BS01 rna ? GO:0003735 ... Q2FW22 28973455
    386540 5nrg:L (3.442) BS02 rna ? GO:0003735 ... Q2FW22 28973455
    386541 5nrg:M (3.442) BS01 rna ? GO:0003735 ... Q2FZ42 28973455
    386542 5nrg:N (3.442) BS01 rna ? GO:0000027 ... Q2FXQ1 28973455
    386543 5nrg:O (3.442) BS01 rna ? GO:0003723 ... Q2FXS8 28973455
    386544 5nrg:P (3.442) BS01 rna ? GO:0003735 ... Q2FW11 28973455
    386545 5nrg:Q (3.442) BS01 rna ? GO:0003735 ... Q2FW08 28973455
    386546 5nrg:R (3.442) BS01 rna ? GO:0003723 ... Q2FW17 28973455
    386547 5nrg:S (3.442) BS01 rna ? GO:0003723 ... Q2G0S0 28973455
    386548 5nrg:S (3.442) BS02 rna ? GO:0003723 ... Q2G0S0 28973455
    386549 5nrg:T (3.442) BS01 rna ? GO:0003735 ... Q2FXT0 28973455
    386550 5nrg:V (3.442) BS01 rna ? GO:0003735 ... Q2FW14 28973455
    386551 5nrg:W (3.442) BS01 rna ? GO:0003735 ... P0A0G2 28973455
    386552 5nrg:W (3.442) BS02 rna ? GO:0003735 ... P0A0G2 28973455
    386553 5nrg:Z (3.442) BS01 rna ? GO:0003735 ... Q2FZF1 28973455
    386554 5nrh:A (1.3) BS01 AMP 6.3.2.4 GO:0003824 ... Q63QJ9 31260169
    386555 5nrh:B (1.3) BS01 AMP 6.3.2.4 GO:0003824 ... Q63QJ9 31260169
    386556 5nri:A (1.5) BS01 AMP 6.3.2.4 GO:0003824 ... A3NZL3 31260169
    386557 5nri:A (1.5) BS02 DAL 6.3.2.4 GO:0003824 ... A3NZL3 31260169
    386558 5nri:A (1.5) BS03 DAL 6.3.2.4 GO:0003824 ... A3NZL3 31260169
    386559 5nri:B (1.5) BS01 AMP 6.3.2.4 GO:0003824 ... A3NZL3 31260169
    386560 5nrk:B (1.45) BS01 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    386561 5nrk:B (1.45) BS02 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    386562 5nrk:B (1.45) BS03 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    386563 5nrk:D (1.45) BS01 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    386564 5nrk:D (1.45) BS02 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    386565 5nrk:D (1.45) BS03 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    386566 5nrl:3 (7.2) BS01 rna ? GO:0000290 ... P57743 28530653
    386567 5nrl:8 (7.2) BS01 rna ? GO:0000398 ... P47093 28530653
    386568 5nrl:A (7.2) BS01 rna ? GO:0000244 ... P33334 28530653
    386569 5nrl:A (7.2) BS02 rna ? GO:0000244 ... P33334 28530653
    386570 5nrl:A (7.2) BS03 rna ? GO:0000244 ... P33334 28530653
    386571 5nrl:B (7.2) BS01 rna 3.6.4.13 GO:0000388 ... P32639 28530653
    386572 5nrl:C (7.2) BS01 rna ? GO:0000244 ... P36048 28530653
    386573 5nrl:C (7.2) BS02 GTP ? GO:0000244 ... P36048 28530653
    386574 5nrl:D (7.2) BS01 rna ? GO:0000398 ... Q06819 28530653
    386575 5nrl:D (7.2) BS02 rna ? GO:0000398 ... Q06819 28530653
    386576 5nrl:E (7.2) BS01 rna ? GO:0000398 ... Q12420 28530653
    386577 5nrl:F (7.2) BS01 rna ? GO:0000244 ... P49704 28530653
    386578 5nrl:F (7.2) BS02 rna ? GO:0000244 ... P49704 28530653
    386579 5nrl:G (7.2) BS01 rna ? GO:0000245 ... Q03338 28530653
    386580 5nrl:G (7.2) BS02 rna ? GO:0000245 ... Q03338 28530653
    386581 5nrl:H (7.2) BS01 rna ? GO:0000245 ... P20053 28530653
    386582 5nrl:J (7.2) BS01 rna ? GO:0000244 ... P19735 28530653
    386583 5nrl:K (7.2) BS01 rna ? GO:0000245 ... P39990 28530653
    386584 5nrl:K (7.2) BS02 rna ? GO:0000245 ... P39990 28530653
    386585 5nrl:L (7.2) BS01 rna ? GO:0000398 ... Q12368 28530653
    386586 5nrl:L (7.2) BS02 ZN ? GO:0000398 ... Q12368 28530653
    386587 5nrl:M (7.2) BS01 rna ? GO:0000388 ... Q00723 28530653
    386588 5nrl:O (7.2) BS01 rna ? GO:0000245 ... P49955 28530653
    386589 5nrl:O (7.2) BS02 rna ? GO:0000245 ... P49955 28530653
    386590 5nrl:Q (7.2) BS01 rna ? GO:0000245 ... Q02554 28530653
    386591 5nrl:R (7.2) BS01 rna ? GO:0000398 ... Q99181 28530653
    386592 5nrl:S (7.2) BS01 rna ? GO:0000245 ... Q06835 28530653
    386593 5nrl:S (7.2) BS02 rna ? GO:0000245 ... Q06835 28530653
    386594 5nrl:S (7.2) BS03 ZN ? GO:0000245 ... Q06835 28530653
    386595 5nrl:S (7.2) BS04 ZN ? GO:0000245 ... Q06835 28530653
    386596 5nrl:S (7.2) BS05 ZN ? GO:0000245 ... Q06835 28530653
    386597 5nrl:T (7.2) BS01 rna ? GO:0000395 ... P19736 28530653
    386598 5nrl:T (7.2) BS02 rna ? GO:0000395 ... P19736 28530653
    386599 5nrl:T (7.2) BS03 ZN ? GO:0000395 ... P19736 28530653
    386600 5nrl:T (7.2) BS04 ZN ? GO:0000395 ... P19736 28530653

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).