SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    386601 5nrl:U (7.2) BS01 rna ? GO:0000245 ... Q07350 28530653
    386602 5nrl:U (7.2) BS02 rna ? GO:0000245 ... Q07350 28530653
    386603 5nrl:U (7.2) BS03 ZN ? GO:0000245 ... Q07350 28530653
    386604 5nrl:W (7.2) BS01 rna ? GO:0000398 ... Q08963 28530653
    386605 5nrl:Y (7.2) BS01 rna ? GO:0000398 ... P40567 28530653
    386606 5nrl:a (7.2) BS01 rna ? GO:0000290 ... P38203 28530653
    386607 5nrl:b (7.2) BS01 rna ? GO:0000243 ... P40018 28530653
    386608 5nrl:d (7.2) BS01 rna ? GO:0000243 ... P43321 28530653
    386609 5nrl:e (7.2) BS01 rna ? GO:0000243 ... Q12330 28530653
    386610 5nrl:f (7.2) BS01 rna ? GO:0000243 ... P54999 28530653
    386611 5nrl:g (7.2) BS01 rna ? GO:0000243 ... P40204 28530653
    386612 5nrl:h (7.2) BS01 rna ? GO:0000243 ... Q02260 28530653
    386613 5nrl:i (7.2) BS01 rna ? GO:0000243 ... Q06217 28530653
    386614 5nrl:j (7.2) BS01 rna ? GO:0000290 ... P40070 28530653
    386615 5nrl:k (7.2) BS01 rna ? GO:0000243 ... P40018 28530653
    386616 5nrl:l (7.2) BS01 rna ? GO:0000243 ... Q02260 28530653
    386617 5nrl:m (7.2) BS01 rna ? GO:0000243 ... Q06217 28530653
    386618 5nrl:n (7.2) BS01 rna ? GO:0000243 ... P43321 28530653
    386619 5nrl:p (7.2) BS01 rna ? GO:0000243 ... Q12330 28530653
    386620 5nrl:q (7.2) BS01 rna ? GO:0000243 ... P54999 28530653
    386621 5nrl:r (7.2) BS01 rna ? GO:0000243 ... P40204 28530653
    386622 5nrl:s (7.2) BS01 rna ? GO:0000243 ... P40018 28530653
    386623 5nrl:t (7.2) BS01 rna ? GO:0000243 ... Q02260 28530653
    386624 5nrl:u (7.2) BS01 rna ? GO:0000243 ... Q06217 28530653
    386625 5nrl:v (7.2) BS01 rna ? GO:0000243 ... P43321 28530653
    386626 5nrl:w (7.2) BS01 rna ? GO:0000243 ... Q12330 28530653
    386627 5nrl:x (7.2) BS01 rna ? GO:0000243 ... P54999 28530653
    386628 5nrl:y (7.2) BS01 rna ? GO:0000243 ... P40204 28530653
    386629 5nrm:B (1.4) BS01 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    386630 5nrm:B (1.4) BS02 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    386631 5nrm:B (1.4) BS03 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    386632 5nrn:A (2.2) BS01 95W 2.7.4.9 GO:0000287 ... P9WKE1 N/A
    386633 5nrn:B (2.2) BS01 95W 2.7.4.9 GO:0000287 ... P9WKE1 N/A
    386634 5nro:A (3.25) BS01 ATP ? GO:0005515 ... P0A6Y8 29290615
    386635 5nrp:A (1.569) BS01 CBY ? N/A P20062 28910388
    386636 5nrp:A (1.569) BS02 CBY ? N/A P20062 28910388
    386637 5nrq:A (2.1) BS01 ZUI 2.7.4.9 GO:0000287 ... P9WKE1 N/A
    386638 5nrq:B (2.1) BS01 ZUI 2.7.4.9 GO:0000287 ... P9WKE1 N/A
    386639 5nrr:A (1.7) BS01 96E 2.1.1.37 N/A Q9UBC3 N/A
    386640 5nrr:B (1.7) BS01 96E 2.1.1.37 N/A Q9UBC3 N/A
    386641 5nrs:A (2.3) BS01 962 2.1.1.37 N/A Q9UBC3 N/A
    386642 5nrs:B (2.3) BS01 962 2.1.1.37 N/A Q9UBC3 N/A
    386643 5nru:A (2.15) BS01 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386644 5nru:A (2.15) BS02 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386645 5nrv:A (2.075) BS01 96K 2.1.1.37 N/A Q9UBC3 N/A
    386646 5nrv:D (2.075) BS01 96K 2.1.1.37 N/A Q9UBC3 N/A
    386647 5nrw:A (1.7) BS01 96N 2.3.1.-
    2.3.1.48
    N/A Q92793 28766825
    386648 5nrx:A (2.35) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386649 5nrx:A (2.35) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386650 5nry:A (1.85) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386651 5nry:A (1.85) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386652 5nrz:A (2.05) BS01 MN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386653 5nrz:A (2.05) BS02 MN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386654 5ns2:A (2.2) BS01 CO 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386655 5ns2:A (2.2) BS02 CO 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386656 5ns3:A (2.4) BS01 rna ? GO:0000049 ... P41201 29211987
    386657 5ns3:A (2.4) BS02 rna ? GO:0000049 ... P41201 29211987
    386658 5ns3:B (2.4) BS01 rna ? GO:0000049 ... P41201 29211987
    386659 5ns3:B (2.4) BS02 rna ? GO:0000049 ... P41201 29211987
    386660 5ns4:A (2.4) BS01 rna ? GO:0000049 ... P41201 29211987
    386661 5ns4:A (2.4) BS02 rna ? GO:0000049 ... P41201 29211987
    386662 5ns4:A (2.4) BS03 MG ? GO:0000049 ... P41201 29211987
    386663 5ns4:B (2.4) BS01 rna ? GO:0000049 ... P41201 29211987
    386664 5ns4:B (2.4) BS02 rna ? GO:0000049 ... P41201 29211987
    386665 5ns4:B (2.4) BS03 MG ? GO:0000049 ... P41201 29211987
    386666 5ns5:A (2.2) BS01 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386667 5ns5:A (2.2) BS02 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386668 5ns5:A (2.2) BS03 CU 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386669 5ns5:A (2.2) BS04 CU 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    386670 5ns8:A (1.55) BS01 NOJ N/A GO:0004553 ... N/A 30345395
    386671 5ns8:B (1.55) BS01 NOJ N/A GO:0004553 ... N/A 30345395
    386672 5ns8:C (1.55) BS01 NOJ N/A GO:0004553 ... N/A 30345395
    386673 5ns9:A (1.44) BS01 GLU ? GO:0015276 ... P19491 28863863
    386674 5ns9:B (1.44) BS01 GLU ? GO:0015276 ... P19491 28863863
    386675 5nsa:A (1.273) BS01 B12 ? N/A P20062 28910388
    386676 5nsa:A (1.273) BS02 CA ? N/A P20062 28910388
    386677 5nsc:A (2.3) BS01 peptide ? N/A Q6MZV7 28655766
    386678 5nsc:A (2.3) BS02 GAL ? N/A Q6MZV7 28655766
    386679 5nsc:B (2.3) BS01 BMA ? N/A Q6MZV7 28655766
    386680 5nsc:B (2.3) BS02 GAL ? N/A Q6MZV7 28655766
    386681 5nsd:A (2.046) BS01 96Q 2.4.2.12 GO:0005125 ... P43490 29402884
    386682 5nsd:A (2.046) BS02 96Q 2.4.2.12 GO:0005125 ... P43490 29402884
    386683 5nsd:B (2.046) BS01 96Q 2.4.2.12 GO:0005125 ... P43490 29402884
    386684 5nse:A (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    386685 5nse:A (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    386686 5nse:A (1.9) BS03 HAR 1.14.13.39 GO:0004517 ... P29473 N/A
    386687 5nse:B (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    386688 5nse:B (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    386689 5nse:B (1.9) BS03 HAR 1.14.13.39 GO:0004517 ... P29473 N/A
    386690 5nsf:A (2.426) BS01 96Z 6.1.1.1 GO:0000166 ... Q57834 30589180
    386691 5nsf:A (2.426) BS02 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    386692 5nsf:A (2.426) BS03 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    386693 5nsf:B (2.426) BS01 96Z 6.1.1.1 GO:0000166 ... Q57834 30589180
    386694 5nsf:B (2.426) BS02 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    386695 5nsf:C (2.426) BS01 96Z 6.1.1.1 GO:0000166 ... Q57834 30589180
    386696 5nsf:D (2.426) BS01 96Z 6.1.1.1 GO:0000166 ... Q57834 30589180
    386697 5nsg:A (2.22) BS01 BMA ? N/A Q6MZV7 28655766
    386698 5nsg:A (2.22) BS02 ZN ? N/A Q6MZV7 28655766
    386699 5nsl:A (1.7) BS01 FRU ? GO:0004553 ... J7HDY4 N/A
    386700 5nsl:A (1.7) BS02 975 ? GO:0004553 ... J7HDY4 N/A
    386701 5nsl:A (1.7) BS03 975 ? GO:0004553 ... J7HDY4 N/A
    386702 5nsl:A (1.7) BS04 975 ? GO:0004553 ... J7HDY4 N/A
    386703 5nsl:A (1.7) BS05 975 ? GO:0004553 ... J7HDY4 N/A
    386704 5nsl:A (1.7) BS06 975 ? GO:0004553 ... J7HDY4 N/A
    386705 5nsl:A (1.7) BS07 975 ? GO:0004553 ... J7HDY4 N/A
    386706 5nsl:A (1.7) BS08 975 ? GO:0004553 ... J7HDY4 N/A
    386707 5nsl:A (1.7) BS09 975 ? GO:0004553 ... J7HDY4 N/A
    386708 5nsl:A (1.7) BS10 975 ? GO:0004553 ... J7HDY4 N/A
    386709 5nsl:A (1.7) BS11 975 ? GO:0004553 ... J7HDY4 N/A
    386710 5nsl:A (1.7) BS12 975 ? GO:0004553 ... J7HDY4 N/A
    386711 5nsl:A (1.7) BS13 975 ? GO:0004553 ... J7HDY4 N/A
    386712 5nsl:A (1.7) BS14 975 ? GO:0004553 ... J7HDY4 N/A
    386713 5nsl:A (1.7) BS15 975 ? GO:0004553 ... J7HDY4 N/A
    386714 5nsl:A (1.7) BS16 975 ? GO:0004553 ... J7HDY4 N/A
    386715 5nsl:A (1.7) BS17 975 ? GO:0004553 ... J7HDY4 N/A
    386716 5nsl:A (1.7) BS18 975 ? GO:0004553 ... J7HDY4 N/A
    386717 5nsl:A (1.7) BS19 975 ? GO:0004553 ... J7HDY4 N/A
    386718 5nsl:A (1.7) BS20 975 ? GO:0004553 ... J7HDY4 N/A
    386719 5nsl:A (1.7) BS21 975 ? GO:0004553 ... J7HDY4 N/A
    386720 5nsl:B (1.7) BS01 FRU ? GO:0004553 ... J7HDY4 N/A
    386721 5nsl:B (1.7) BS02 975 ? GO:0004553 ... J7HDY4 N/A
    386722 5nsl:B (1.7) BS03 975 ? GO:0004553 ... J7HDY4 N/A
    386723 5nsl:B (1.7) BS04 975 ? GO:0004553 ... J7HDY4 N/A
    386724 5nsl:B (1.7) BS05 975 ? GO:0004553 ... J7HDY4 N/A
    386725 5nsl:B (1.7) BS06 975 ? GO:0004553 ... J7HDY4 N/A
    386726 5nsl:B (1.7) BS07 975 ? GO:0004553 ... J7HDY4 N/A
    386727 5nsl:B (1.7) BS08 975 ? GO:0004553 ... J7HDY4 N/A
    386728 5nsl:B (1.7) BS09 975 ? GO:0004553 ... J7HDY4 N/A
    386729 5nsl:B (1.7) BS10 975 ? GO:0004553 ... J7HDY4 N/A
    386730 5nsl:B (1.7) BS11 975 ? GO:0004553 ... J7HDY4 N/A
    386731 5nsl:B (1.7) BS12 975 ? GO:0004553 ... J7HDY4 N/A
    386732 5nsl:B (1.7) BS13 975 ? GO:0004553 ... J7HDY4 N/A
    386733 5nsl:B (1.7) BS14 975 ? GO:0004553 ... J7HDY4 N/A
    386734 5nsl:B (1.7) BS15 975 ? GO:0004553 ... J7HDY4 N/A
    386735 5nsl:B (1.7) BS16 975 ? GO:0004553 ... J7HDY4 N/A
    386736 5nsm:A (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386737 5nsm:A (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386738 5nsm:A (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386739 5nsm:B (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386740 5nsm:B (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386741 5nsm:B (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386742 5nsm:C (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386743 5nsm:C (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386744 5nsm:C (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386745 5nsm:D (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386746 5nsm:D (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386747 5nsm:D (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386748 5nsm:E (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386749 5nsm:E (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386750 5nsm:E (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386751 5nsm:F (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386752 5nsm:F (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386753 5nsm:F (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386754 5nsm:G (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386755 5nsm:G (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386756 5nsm:G (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386757 5nsm:H (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386758 5nsm:H (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386759 5nsm:H (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386760 5nsm:I (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386761 5nsm:I (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386762 5nsm:I (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386763 5nsm:J (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386764 5nsm:J (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386765 5nsm:J (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386766 5nsm:K (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386767 5nsm:K (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386768 5nsm:K (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386769 5nsm:L (2.4) BS01 BCT ? GO:0004177 ... Q385B0 28815215
    386770 5nsm:L (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386771 5nsm:L (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    386772 5nsp:A (2.3) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568
    386773 5nsp:A (2.3) BS02 BCT 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568
    386774 5nsp:B (2.3) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568
    386775 5nsp:B (2.3) BS02 97E 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568 MOAD: ic50=0.34uM
    BindingDB: IC50=>10000nM
    386776 5nsp:B (2.3) BS03 BCT 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568
    386777 5nsq:A (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    386778 5nsq:A (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386779 5nsq:A (3.0) BS03 BB2 ? GO:0004177 ... Q385B0 28815215
    386780 5nsq:B (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    386781 5nsq:B (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386782 5nsq:B (3.0) BS03 BB2 ? GO:0004177 ... Q385B0 28815215
    386783 5nsq:C (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    386784 5nsq:C (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386785 5nsq:C (3.0) BS03 BB2 ? GO:0004177 ... Q385B0 28815215
    386786 5nsq:D (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    386787 5nsq:D (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386788 5nsq:D (3.0) BS03 BB2 ? GO:0004177 ... Q385B0 28815215
    386789 5nsq:E (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    386790 5nsq:E (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386791 5nsq:E (3.0) BS03 BB2 ? GO:0004177 ... Q385B0 28815215
    386792 5nsq:F (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    386793 5nsq:F (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    386794 5nsq:F (3.0) BS03 BB2 ? GO:0004177 ... Q385B0 28815215
    386795 5nsr:M (3.8) BS01 dna ? GO:0001216 ... P06223 28579332
    386796 5nsr:M (3.8) BS02 dna ? GO:0001216 ... P06223 28579332
    386797 5nss:M (5.8) BS01 dna ? GO:0001216 ... P06223 28579332
    386798 5nsx:A (1.8) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    386799 5nsx:A (1.8) BS02 97K 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194 MOAD: ic50=400nM
    386800 5nsx:B (1.8) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).