SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    388201 5o60:C (3.18) BS03 MG ? GO:0002181 ... A0QSD4 28683309
    388202 5o60:D (3.18) BS01 rna ? GO:0003735 ... A0QSD1 28683309
    388203 5o60:E (3.18) BS01 rna ? GO:0003735 ... A0QSD2 28683309
    388204 5o60:E (3.18) BS02 MG ? GO:0003735 ... A0QSD2 28683309
    388205 5o60:F (3.18) BS01 rna ? GO:0000049 ... A0QSG1 28683309
    388206 5o60:F (3.18) BS02 rna ? GO:0000049 ... A0QSG1 28683309
    388207 5o60:F (3.18) BS03 MG ? GO:0000049 ... A0QSG1 28683309
    388208 5o60:G (3.18) BS01 rna ? GO:0002181 ... A0QSG4 28683309
    388209 5o60:H (3.18) BS01 rna ? GO:0003735 ... A0R7F6 28683309
    388210 5o60:I (3.18) BS01 rna ? GO:0003735 ... A0QS62 28683309
    388211 5o60:J (3.18) BS01 rna ? GO:0003735 ... A0QS45 28683309
    388212 5o60:K (3.18) BS01 rna ? GO:0003729 ... A0QSP8 28683309
    388213 5o60:L (3.18) BS01 rna ? GO:0003735 ... A0QSF9 28683309
    388214 5o60:M (3.18) BS01 rna ? GO:0003735 ... A0QSG8 28683309
    388215 5o60:N (3.18) BS01 rna ? GO:0000049 ... A0QSD8 28683309
    388216 5o60:N (3.18) BS02 MG ? GO:0000049 ... A0QSD8 28683309
    388217 5o60:O (3.18) BS01 rna ? GO:0003735 ... A0QSL9 28683309
    388218 5o60:P (3.18) BS01 rna ? GO:0003735 ... A0QSG5 28683309
    388219 5o60:P (3.18) BS02 rna ? GO:0003735 ... A0QSG5 28683309
    388220 5o60:Q (3.18) BS01 rna ? GO:0003735 ... A0QV42 28683309
    388221 5o60:R (3.18) BS01 rna ? GO:0000027 ... A0QYU6 28683309
    388222 5o60:S (3.18) BS01 rna ? GO:0003723 ... A0R151 28683309
    388223 5o60:T (3.18) BS01 rna ? GO:0003735 ... A0QSD6 28683309
    388224 5o60:U (3.18) BS01 rna ? GO:0003735 ... A0QSD3 28683309
    388225 5o60:V (3.18) BS01 rna ? GO:0003723 ... A0QSG0 28683309
    388226 5o60:W (3.18) BS01 rna ? GO:0003723 ... A0R3D2 28683309
    388227 5o60:W (3.18) BS02 rna ? GO:0003723 ... A0R3D2 28683309
    388228 5o60:X (3.18) BS01 rna ? GO:0003735 ... A0R150 28683309
    388229 5o60:X (3.18) BS02 rna ? GO:0003735 ... A0R150 28683309
    388230 5o60:Y (3.18) BS01 rna ? GO:0003735 ... A0QV03 28683309
    388231 5o60:Y (3.18) BS02 ZN ? GO:0003735 ... A0QV03 28683309
    388232 5o60:Z (3.18) BS01 rna ? GO:0003735 ... A0QSD9 28683309
    388233 5o60:a (3.18) BS01 rna ? GO:0003735 ... A0QSG7 28683309
    388234 5o60:a (3.18) BS02 rna ? GO:0003735 ... A0QSG7 28683309
    388235 5o60:b (3.18) BS01 rna ? GO:0003735 ... A0R3I9 28683309
    388236 5o60:c (3.18) BS01 rna ? GO:0003735 ... A0QS39 28683309
    388237 5o60:c (3.18) BS02 ZN ? GO:0003735 ... A0QS39 28683309
    388238 5o60:d (3.18) BS01 rna ? GO:0003735 ... A0R7K0 28683309
    388239 5o60:e (3.18) BS01 rna ? GO:0003735 ... A0QYU7 28683309
    388240 5o60:f (3.18) BS01 rna ? GO:0003735 ... A0QSL4 28683309
    388241 5o60:g (3.18) BS01 rna ? GO:0003735 ... A0R215 28683309
    388242 5o60:g (3.18) BS02 ZN ? GO:0003735 ... A0R215 28683309
    388243 5o61:BB (3.31) BS01 rna ? N/A A0QR10 28683309
    388244 5o61:BB (3.31) BS02 rna ? N/A A0QR10 28683309
    388245 5o61:BC (3.31) BS01 rna ? GO:0003676 ... A0QSD7 28683309
    388246 5o61:BD (3.31) BS01 rna ? GO:0003723 ... A0QSL7 28683309
    388247 5o61:BE (3.31) BS01 rna ? GO:0003723 ... A0QSG6 28683309
    388248 5o61:BF (3.31) BS01 rna N/A GO:0003735 ... N/A 28683309
    388249 5o61:BG (3.31) BS01 rna ? GO:0000049 ... A0QS97 28683309
    388250 5o61:BH (3.31) BS01 rna ? GO:0003735 ... A0QSG3 28683309
    388251 5o61:BI (3.31) BS01 rna ? GO:0003723 ... A0QSP9 28683309
    388252 5o61:BI (3.31) BS02 rna ? GO:0003723 ... A0QSP9 28683309
    388253 5o61:BJ (3.31) BS01 rna ? GO:0000049 ... A0QSD0 28683309
    388254 5o61:BK (3.31) BS01 rna ? GO:0003735 ... A0QSL6 28683309
    388255 5o61:BL (3.31) BS01 rna ? GO:0000049 ... A0QS96 28683309
    388256 5o61:BM (3.31) BS01 rna ? GO:0000049 ... A0QSL5 28683309
    388257 5o61:BN (3.31) BS01 rna ? GO:0003735 ... A0QSG2 28683309
    388258 5o61:BN (3.31) BS02 ZN ? GO:0003735 ... A0QSG2 28683309
    388259 5o61:BO (3.31) BS01 rna ? GO:0003735 ... A0QVQ3 28683309
    388260 5o61:BO (3.31) BS02 rna ? GO:0003735 ... A0QVQ3 28683309
    388261 5o61:BP (3.31) BS01 rna ? GO:0003735 ... A0QV37 28683309
    388262 5o61:BQ (3.31) BS01 rna ? GO:0003735 ... A0QSE0 28683309
    388263 5o61:BR (3.31) BS01 rna ? GO:0003735 ... A0R7F7 28683309
    388264 5o61:BR (3.31) BS02 ZN ? GO:0003735 ... A0R7F7 28683309
    388265 5o61:BS (3.31) BS01 rna ? GO:0000028 ... A0QSD5 28683309
    388266 5o61:BT (3.31) BS01 rna ? GO:0003723 ... A0R102 28683309
    388267 5o61:BV (3.31) BS01 rna ? GO:0003735 ... A0QVB8 28683309
    388268 5o61:C (3.31) BS01 rna ? GO:0002181 ... A0QSD4 28683309
    388269 5o61:C (3.31) BS02 rna ? GO:0002181 ... A0QSD4 28683309
    388270 5o61:C (3.31) BS03 MG ? GO:0002181 ... A0QSD4 28683309
    388271 5o61:D (3.31) BS01 rna ? GO:0003735 ... A0QSD1 28683309
    388272 5o61:E (3.31) BS01 rna ? GO:0003735 ... A0QSD2 28683309
    388273 5o61:E (3.31) BS02 MG ? GO:0003735 ... A0QSD2 28683309
    388274 5o61:F (3.31) BS01 rna ? GO:0000049 ... A0QSG1 28683309
    388275 5o61:F (3.31) BS02 rna ? GO:0000049 ... A0QSG1 28683309
    388276 5o61:F (3.31) BS03 rna ? GO:0000049 ... A0QSG1 28683309
    388277 5o61:F (3.31) BS04 MG ? GO:0000049 ... A0QSG1 28683309
    388278 5o61:G (3.31) BS01 rna ? GO:0002181 ... A0QSG4 28683309
    388279 5o61:H (3.31) BS01 rna ? GO:0003735 ... A0R7F6 28683309
    388280 5o61:I (3.31) BS01 rna ? GO:0003735 ... A0QS62 28683309
    388281 5o61:J (3.31) BS01 rna ? GO:0003735 ... A0QS45 28683309
    388282 5o61:K (3.31) BS01 rna ? GO:0003729 ... A0QSP8 28683309
    388283 5o61:L (3.31) BS01 rna ? GO:0003735 ... A0QSF9 28683309
    388284 5o61:L (3.31) BS02 rna ? GO:0003735 ... A0QSF9 28683309
    388285 5o61:M (3.31) BS01 rna ? GO:0003735 ... A0QSG8 28683309
    388286 5o61:N (3.31) BS01 rna ? GO:0000049 ... A0QSD8 28683309
    388287 5o61:N (3.31) BS02 MG ? GO:0000049 ... A0QSD8 28683309
    388288 5o61:O (3.31) BS01 rna ? GO:0003735 ... A0QSL9 28683309
    388289 5o61:P (3.31) BS01 rna ? GO:0003735 ... A0QSG5 28683309
    388290 5o61:P (3.31) BS02 rna ? GO:0003735 ... A0QSG5 28683309
    388291 5o61:Q (3.31) BS01 rna ? GO:0003735 ... A0QV42 28683309
    388292 5o61:Q (3.31) BS02 rna ? GO:0003735 ... A0QV42 28683309
    388293 5o61:R (3.31) BS01 rna ? GO:0000027 ... A0QYU6 28683309
    388294 5o61:S (3.31) BS01 rna ? GO:0003723 ... A0R151 28683309
    388295 5o61:T (3.31) BS01 rna ? GO:0003735 ... A0QSD6 28683309
    388296 5o61:U (3.31) BS01 rna ? GO:0003735 ... A0QSD3 28683309
    388297 5o61:V (3.31) BS01 rna ? GO:0003723 ... A0QSG0 28683309
    388298 5o61:V (3.31) BS02 MG ? GO:0003723 ... A0QSG0 28683309
    388299 5o61:W (3.31) BS01 rna ? GO:0003723 ... A0R3D2 28683309
    388300 5o61:W (3.31) BS02 rna ? GO:0003723 ... A0R3D2 28683309
    388301 5o61:X (3.31) BS01 rna ? GO:0003735 ... A0R150 28683309
    388302 5o61:X (3.31) BS02 rna ? GO:0003735 ... A0R150 28683309
    388303 5o61:Y (3.31) BS01 rna ? GO:0003735 ... A0QV03 28683309
    388304 5o61:Y (3.31) BS02 ZN ? GO:0003735 ... A0QV03 28683309
    388305 5o61:Z (3.31) BS01 rna ? GO:0003735 ... A0QSD9 28683309
    388306 5o61:a (3.31) BS01 rna ? GO:0003735 ... A0QSG7 28683309
    388307 5o61:a (3.31) BS02 rna ? GO:0003735 ... A0QSG7 28683309
    388308 5o61:b (3.31) BS01 rna ? GO:0003735 ... A0R3I9 28683309
    388309 5o61:c (3.31) BS01 rna ? GO:0003735 ... A0QS39 28683309
    388310 5o61:c (3.31) BS02 ZN ? GO:0003735 ... A0QS39 28683309
    388311 5o61:d (3.31) BS01 rna ? GO:0003735 ... A0R7K0 28683309
    388312 5o61:e (3.31) BS01 rna ? GO:0003735 ... A0QYU7 28683309
    388313 5o61:f (3.31) BS01 rna ? GO:0003735 ... A0QSL4 28683309
    388314 5o61:f (3.31) BS02 ZN ? GO:0003735 ... A0QSL4 28683309
    388315 5o61:g (3.31) BS01 rna ? GO:0003735 ... A0R215 28683309
    388316 5o61:g (3.31) BS02 ZN ? GO:0003735 ... A0R215 28683309
    388317 5o63:A (1.6) BS01 dna N/A N/A N/A 28934493
    388318 5o63:A (1.6) BS02 dna N/A N/A N/A 28934493
    388319 5o63:A (1.6) BS03 dna N/A N/A N/A 28934493
    388320 5o63:B (1.6) BS01 dna N/A N/A N/A 28934493
    388321 5o63:B (1.6) BS02 dna N/A N/A N/A 28934493
    388322 5o63:B (1.6) BS03 dna N/A N/A N/A 28934493
    388323 5o64:C (3.3) BS01 HEC ? GO:0005506 ... P07173 28781082
    388324 5o64:C (3.3) BS02 HEC ? GO:0005506 ... P07173 28781082
    388325 5o64:C (3.3) BS03 HEC ? GO:0005506 ... P07173 28781082
    388326 5o64:C (3.3) BS04 HEC ? GO:0005506 ... P07173 28781082
    388327 5o64:L (3.3) BS01 BCB ? GO:0009772 ... P06009 28781082
    388328 5o64:L (3.3) BS02 BCB ? GO:0009772 ... P06009 28781082
    388329 5o64:L (3.3) BS03 BPB ? GO:0009772 ... P06009 28781082
    388330 5o64:L (3.3) BS04 FE2 ? GO:0009772 ... P06009 28781082
    388331 5o64:L (3.3) BS05 MQ7 ? GO:0009772 ... P06009 28781082
    388332 5o64:L (3.3) BS06 BCB ? GO:0009772 ... P06009 28781082
    388333 5o64:L (3.3) BS07 BPB ? GO:0009772 ... P06009 28781082
    388334 5o64:M (3.3) BS01 BCB ? GO:0009772 ... P06010 28781082
    388335 5o64:M (3.3) BS02 BPB ? GO:0009772 ... P06010 28781082
    388336 5o64:M (3.3) BS03 FE2 ? GO:0009772 ... P06010 28781082
    388337 5o64:M (3.3) BS04 MQ7 ? GO:0009772 ... P06010 28781082
    388338 5o64:M (3.3) BS05 BCB ? GO:0009772 ... P06010 28781082
    388339 5o64:M (3.3) BS06 BCB ? GO:0009772 ... P06010 28781082
    388340 5o64:M (3.3) BS07 BPB ? GO:0009772 ... P06010 28781082
    388341 5o64:M (3.3) BS08 NS5 ? GO:0009772 ... P06010 28781082
    388342 5o65:A (2.5) BS01 C8E N/A N/A P0DXF8 28811582
    388343 5o65:C (2.5) BS01 C8E N/A N/A P0DXF8 28811582
    388344 5o68:A (3.08) BS01 C8E N/A N/A P0DXF8 28811582
    388345 5o68:C (3.08) BS01 C8E N/A N/A P0DXF8 28811582
    388346 5o6b:A (2.029) BS01 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388347 5o6b:A (2.029) BS02 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    388348 5o6b:A (2.029) BS03 ALF 3.6.4.12 GO:0000723 ... P07271 29202194
    388349 5o6b:B (2.029) BS01 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388350 5o6b:B (2.029) BS02 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    388351 5o6b:B (2.029) BS03 ALF 3.6.4.12 GO:0000723 ... P07271 29202194
    388352 5o6c:A (1.75) BS01 ZN 2.3.2.33 N/A O75592 29643511
    388353 5o6c:A (1.75) BS02 ZN 2.3.2.33 N/A O75592 29643511
    388354 5o6c:A (1.75) BS03 ZN 2.3.2.33 N/A O75592 29643511
    388355 5o6c:A (1.75) BS04 ZN 2.3.2.33 N/A O75592 29643511
    388356 5o6c:A (1.75) BS05 ZN 2.3.2.33 N/A O75592 29643511
    388357 5o6c:A (1.75) BS06 ZN 2.3.2.33 N/A O75592 29643511
    388358 5o6d:A (3.283) BS01 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388359 5o6d:A (3.283) BS02 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388360 5o6d:A (3.283) BS03 AGS 3.6.4.12 GO:0000723 ... P07271 29202194
    388361 5o6d:A (3.283) BS04 MG 3.6.4.12 GO:0000723 ... P07271 29202194
    388362 5o6d:B (3.283) BS01 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388363 5o6d:B (3.283) BS02 AGS 3.6.4.12 GO:0000723 ... P07271 29202194
    388364 5o6d:B (3.283) BS03 MG 3.6.4.12 GO:0000723 ... P07271 29202194
    388365 5o6e:A (3.345) BS01 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388366 5o6e:A (3.345) BS02 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388367 5o6e:A (3.345) BS03 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    388368 5o6e:A (3.345) BS04 ALF 3.6.4.12 GO:0000723 ... P07271 29202194
    388369 5o6e:B (3.345) BS01 dna 3.6.4.12 GO:0000723 ... P07271 29202194
    388370 5o6e:B (3.345) BS02 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    388371 5o6e:B (3.345) BS03 ALF 3.6.4.12 GO:0000723 ... P07271 29202194
    388372 5o6g:A (2.75) BS01 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388373 5o6g:A (2.75) BS02 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388374 5o6g:A (2.75) BS03 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388375 5o6g:A (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388376 5o6g:A (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388377 5o6g:D (2.75) BS01 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388378 5o6g:D (2.75) BS02 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388379 5o6g:D (2.75) BS03 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388380 5o6g:D (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388381 5o6g:D (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388382 5o6g:G (2.75) BS01 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388383 5o6g:G (2.75) BS02 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388384 5o6g:G (2.75) BS03 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388385 5o6g:G (2.75) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388386 5o6g:G (2.75) BS05 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388387 5o6h:A (1.29) BS01 MYA 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 29760414
    388388 5o6h:A (1.29) BS02 9M2 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 29760414 MOAD: ic50=0.013uM
    388389 5o6h:A (1.29) BS03 MG 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 29760414
    388390 5o6h:B (1.29) BS01 MYA 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 29760414
    388391 5o6h:B (1.29) BS02 9M2 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 29760414 MOAD: ic50=0.013uM
    388392 5o6h:B (1.29) BS03 MG 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 29760414
    388393 5o6i:A (2.25) BS01 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388394 5o6i:A (2.25) BS02 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388395 5o6i:A (2.25) BS03 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388396 5o6i:A (2.25) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929
    388397 5o6i:F (2.25) BS01 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388398 5o6i:F (2.25) BS02 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388399 5o6i:F (2.25) BS03 dna 3.1.-.- GO:0004519 ... P21505 29177929
    388400 5o6i:F (2.25) BS04 MN 3.1.-.- GO:0004519 ... P21505 29177929

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).