SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    388801 5oa1:I (4.4) BS01 ZN ? GO:0000122 ... P32529 28739580
    388802 5oa1:J (4.4) BS01 ZN ? GO:0000428 ... P22139 28739580
    388803 5oa1:L (4.4) BS01 ZN ? GO:0000428 ... P40422 28739580
    388804 5oa1:U (4.4) BS01 dna ? GO:0000120 ... P40992 28739580
    388805 5oa2:C (2.15) BS01 BGC 2.4.1.- N/A Q06135 29164827
    388806 5oa2:C (2.15) BS02 BGC 2.4.1.- N/A Q06135 29164827
    388807 5oa2:C (2.15) BS03 BGC 2.4.1.- N/A Q06135 29164827
    388808 5oa2:C (2.15) BS04 9PW 2.4.1.- N/A Q06135 29164827 MOAD: Kd=9.8uM
    388809 5oa3:0 (4.2) BS01 rna ? GO:0001731 ... P41214 28732596
    388810 5oa3:0 (4.2) BS02 rna ? GO:0001731 ... P41214 28732596
    388811 5oa3:A (4.2) BS01 rna ? GO:0000028 ... P08865 28732596
    388812 5oa3:B (4.2) BS01 rna ? GO:0002181 ... P61247 28732596
    388813 5oa3:B (4.2) BS02 rna ? GO:0002181 ... P61247 28732596
    388814 5oa3:C (4.2) BS01 rna ? GO:0002181 ... P15880 28732596
    388815 5oa3:D (4.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 28732596
    388816 5oa3:E (4.2) BS01 rna ? GO:0002181 ... P62701 28732596
    388817 5oa3:F (4.2) BS01 rna ? GO:0000028 ... P46782 28732596
    388818 5oa3:G (4.2) BS01 rna ? GO:0000082 ... P62753 28732596
    388819 5oa3:H (4.2) BS01 rna ? GO:0001843 ... P62081 28732596
    388820 5oa3:I (4.2) BS01 rna ? GO:0000462 ... P62241 28732596
    388821 5oa3:J (4.2) BS01 rna ? GO:0002181 ... P46781 28732596
    388822 5oa3:K (4.2) BS01 rna ? GO:0002181 ... P46783 28732596
    388823 5oa3:L (4.2) BS01 rna ? GO:0002181 ... P62280 28732596
    388824 5oa3:M (4.2) BS01 rna ? GO:0002181 ... P25398 28732596
    388825 5oa3:N (4.2) BS01 rna ? GO:0002181 ... P62277 28732596
    388826 5oa3:O (4.2) BS01 rna ? GO:0000028 ... P62263 28732596
    388827 5oa3:P (4.2) BS01 rna ? GO:0000028 ... P62841 28732596
    388828 5oa3:Q (4.2) BS01 rna ? GO:0000462 ... P62249 28732596
    388829 5oa3:R (4.2) BS01 rna ? GO:0002181 ... P08708 28732596
    388830 5oa3:S (4.2) BS01 rna ? GO:0002181 ... P62269 28732596
    388831 5oa3:T (4.2) BS01 rna ? GO:0000028 ... P39019 28732596
    388832 5oa3:U (4.2) BS01 rna ? GO:0002181 ... P60866 28732596
    388833 5oa3:W (4.2) BS01 rna ? GO:0002181 ... P62244 28732596
    388834 5oa3:X (4.2) BS01 rna ? GO:0002181 ... P62266 28732596
    388835 5oa3:Y (4.2) BS01 rna ? GO:0002181 ... P62847 28732596
    388836 5oa3:Z (4.2) BS01 rna ? GO:0002181 ... P62851 28732596
    388837 5oa3:a (4.2) BS01 rna ? GO:0003735 ... P62854 28732596
    388838 5oa3:a (4.2) BS02 rna ? GO:0003735 ... P62854 28732596
    388839 5oa3:a (4.2) BS03 ZN ? GO:0003735 ... P62854 28732596
    388840 5oa3:b (4.2) BS01 rna ? GO:0000028 ... P42677 28732596
    388841 5oa3:b (4.2) BS02 rna ? GO:0000028 ... P42677 28732596
    388842 5oa3:c (4.2) BS01 rna ? GO:0003735 ... P62857 28732596
    388843 5oa3:d (4.2) BS01 rna ? GO:0002181 ... P62273 28732596
    388844 5oa3:d (4.2) BS02 ZN ? GO:0002181 ... P62273 28732596
    388845 5oa3:e (4.2) BS01 rna ? GO:0003735 ... P62861 28732596
    388846 5oa3:f (4.2) BS01 rna ? GO:0003735 ... Q5RKT7 28732596
    388847 5oa3:f (4.2) BS02 ZN ? GO:0003735 ... Q5RKT7 28732596
    388848 5oa3:g (4.2) BS01 rna ? GO:0001891 ... P63244 28732596
    388849 5oa4:A (1.55) BS01 58D 1.14.11.81 N/A Q5AR53 29563492
    388850 5oa6:A (1.94) BS01 9PT 2.4.1.- N/A Q06135 29164827 MOAD: Kd=3.1uM
    388851 5oa7:A (1.65) BS01 AKG 1.14.11.81 N/A Q5AR53 29563492
    388852 5oa7:A (1.65) BS02 58K 1.14.11.81 N/A Q5AR53 29563492
    388853 5oa8:A (1.75) BS01 AKG 1.14.11.81 N/A Q5AR53 29563492
    388854 5oa8:A (1.75) BS02 58L 1.14.11.81 N/A Q5AR53 29563492
    388855 5oab:A (1.111) BS01 PO4 3.1.27.- GO:0003676 ... Q93091 30287244
    388856 5oab:A (1.111) BS02 PO4 3.1.27.- GO:0003676 ... Q93091 30287244
    388857 5oab:A (1.111) BS03 PO4 3.1.27.- GO:0003676 ... Q93091 30287244
    388858 5oae:A (2.7) BS01 CU ? GO:0016491 ... B2ZB02 29634898
    388859 5oae:A (2.7) BS02 CU ? GO:0016491 ... B2ZB02 29634898
    388860 5oae:A (2.7) BS03 SVF ? GO:0016491 ... B2ZB02 29634898
    388861 5oae:B (2.7) BS01 CU ? GO:0016491 ... B2ZB02 29634898
    388862 5oae:B (2.7) BS02 CU ? GO:0016491 ... B2ZB02 29634898
    388863 5oae:B (2.7) BS03 SVF ? GO:0016491 ... B2ZB02 29634898
    388864 5oaf:A (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29323271
    388865 5oaf:B (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    388866 5oaf:B (4.06) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    388867 5oaf:C (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29323271
    388868 5oaf:D (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    388869 5oaf:E (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29323271
    388870 5oaf:F (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    388871 5oah:A (1.8) BS01 FE ? GO:0006826 ... Q0P8Q4 N/A
    388872 5oah:A (1.8) BS02 95B ? GO:0006826 ... Q0P8Q4 N/A
    388873 5oah:B (1.8) BS01 FE ? GO:0006826 ... Q0P8Q4 N/A
    388874 5oah:B (1.8) BS02 95B ? GO:0006826 ... Q0P8Q4 N/A
    388875 5oai:A (2.0) BS01 B5K 2.3.2.27 GO:0005634 ... Q00987 30715803 MOAD: Ki=0.1uM
    BindingDB: Ki=0.13nM
    388876 5oaj:D (2.47) BS01 TKT ? GO:0004888 ... Q8WSF8 31709057
    388877 5oaj:E (2.47) BS01 TKT ? GO:0004888 ... Q8WSF8 31709057
    388878 5oaj:F (2.47) BS01 TKT ? GO:0004888 ... Q8WSF8 31709057
    388879 5oaj:J (2.47) BS01 TKT ? GO:0004888 ... Q8WSF8 31709057
    388880 5oak:A (1.5) BS01 peptide ? N/A Q0KHR3 29440511
    388881 5oak:C (1.5) BS01 peptide ? N/A Q0KHR3 29440511
    388882 5oak:C (1.5) BS02 peptide ? N/A Q0KHR3 29440511
    388883 5oal:A (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388884 5oal:A (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388885 5oal:B (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388886 5oal:B (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388887 5oal:C (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388888 5oal:C (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388889 5oal:D (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388890 5oal:D (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388891 5oal:E (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388892 5oal:E (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388893 5oal:F (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388894 5oal:F (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388895 5oal:G (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388896 5oal:G (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388897 5oal:H (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388898 5oal:H (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388899 5oal:I (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388900 5oal:I (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388901 5oal:J (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388902 5oal:J (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388903 5oal:K (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388904 5oal:K (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388905 5oal:L (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388906 5oal:L (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388907 5oal:M (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388908 5oal:M (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388909 5oal:N (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388910 5oal:N (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388911 5oal:O (3.2) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388912 5oal:O (3.2) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388913 5oam:A (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 29078367
    388914 5oam:B (5.5) BS01 GDP ? GO:0000226 ... P02554 29078367
    388915 5oam:B (5.5) BS02 TA1 ? GO:0000226 ... P02554 29078367 BindingDB: EC50=520nM
    388916 5oan:B (2.6) BS01 GLY ? GO:0004888 ... Q8WSF8 31709057
    388917 5oan:C (2.6) BS01 GLY ? GO:0004888 ... Q8WSF8 31709057
    388918 5oan:D (2.6) BS01 GLY ? GO:0004888 ... Q8WSF8 31709057
    388919 5oan:E (2.6) BS01 GLY ? GO:0004888 ... Q8WSF8 31709057
    388920 5oar:A (2.3) BS01 MAN 3.2.1.52 N/A Q8J2T0 29239122
    388921 5oar:B (2.3) BS01 NGT 3.2.1.52 GO:0004553 ... Q8J2T0 29239122
    388922 5oar:C (2.3) BS01 MAN 3.2.1.52 N/A Q8J2T0 29239122
    388923 5oar:D (2.3) BS01 TBR 3.2.1.52 GO:0004553 ... Q8J2T0 29239122
    388924 5oar:D (2.3) BS02 NGT 3.2.1.52 GO:0004553 ... Q8J2T0 29239122
    388925 5oas:A (1.62) BS01 MG 2.3.3.9 GO:0000287 ... Q9I636 28985053
    388926 5oas:A (1.62) BS02 MG 2.3.3.9 GO:0000287 ... Q9I636 28985053
    388927 5oav:A (0.95) BS01 peptide 2.7.10.2 N/A P00523 N/A
    388928 5oav:A (0.95) BS02 peptide 2.7.10.2 N/A P00523 N/A
    388929 5oav:C (0.95) BS01 peptide 2.7.10.2 N/A P00523 N/A
    388930 5oaw:A (2.34) BS01 MG N/A GO:0000287 ... N/A 29967067
    388931 5oaw:A (2.34) BS02 16G N/A GO:0000287 ... N/A 29967067
    388932 5oaw:B (2.34) BS01 16G N/A GO:0000287 ... N/A 29967067
    388933 5oax:A (1.2) BS01 9Q5 ? GO:0030246 ... P17931 29284090 MOAD: Kd=27nM
    388934 5oay:A (-1.00) BS01 SF4 ? GO:0003677 ... P9WF43 29273788
    388935 5ob0:A (1.172) BS01 peptide 2.7.10.2 N/A P00523 N/A
    388936 5ob1:A (1.172) BS01 peptide 2.7.10.2 N/A P00523 N/A
    388937 5ob2:A (1.8) BS01 peptide 2.7.10.2 N/A P00523 N/A
    388938 5ob2:A (1.8) BS02 peptide 2.7.10.2 N/A P00523 N/A
    388939 5ob2:C (1.8) BS01 peptide 2.7.10.2 N/A P00523 N/A
    388940 5ob2:C (1.8) BS02 peptide 2.7.10.2 N/A P00523 N/A
    388941 5ob6:A (1.88) BS01 CL 3.2.1.17 GO:0003796 ... P00698 28702564
    388942 5ob6:A (1.88) BS02 9Q8 3.2.1.17 GO:0003796 ... P00698 28702564
    388943 5ob6:A (1.88) BS03 RU2 3.2.1.17 GO:0003796 ... P00698 28702564
    388944 5ob6:A (1.88) BS04 RU1 3.2.1.17 GO:0003796 ... P00698 28702564
    388945 5ob7:A (2.1) BS01 CL 3.2.1.17 GO:0003796 ... P00698 28702564
    388946 5ob7:A (2.1) BS02 9QB 3.2.1.17 GO:0003796 ... P00698 28702564
    388947 5ob7:A (2.1) BS03 9Q8 3.2.1.17 GO:0003796 ... P00698 28702564
    388948 5ob7:A (2.1) BS04 RU 3.2.1.17 GO:0003796 ... P00698 28702564
    388949 5ob8:A (1.85) BS01 CL 3.2.1.17 GO:0003796 ... P00698 28702564
    388950 5ob8:A (1.85) BS02 9QB 3.2.1.17 GO:0003796 ... P00698 28702564
    388951 5ob9:A (2.38) BS01 9Q8 3.2.1.17 GO:0003796 ... P00698 28702564
    388952 5ob9:A (2.38) BS02 9Q8 3.2.1.17 GO:0003796 ... P00698 28702564
    388953 5oba:A (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388954 5oba:B (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388955 5oba:C (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388956 5oba:D (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388957 5oba:E (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388958 5oba:F (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388959 5oba:G (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388960 5oba:H (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388961 5oba:I (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388962 5oba:J (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388963 5oba:K (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388964 5oba:L (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388965 5oba:M (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388966 5oba:N (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388967 5oba:O (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388968 5oba:P (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388969 5oba:Q (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388970 5oba:R (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388971 5oba:S (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388972 5oba:T (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388973 5oba:U (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388974 5oba:V (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388975 5oba:W (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388976 5oba:X (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    388977 5obc:B (2.07) BS01 RU2 4.6.1.18 GO:0003676 ... P61823 28702564
    388978 5obd:B (1.98) BS01 9Q8 4.6.1.18 GO:0003676 ... P61823 28702564
    388979 5obe:B (1.82) BS01 9Q8 4.6.1.18 GO:0003676 ... P61823 28702564
    388980 5obg:A (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388981 5obg:B (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388982 5obg:C (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388983 5obg:D (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388984 5obg:D (2.0) BS02 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388985 5obg:E (2.0) BS01 SY9 ? GO:0004888 ... Q8WSF8 31709057
    388986 5obh:A (2.4) BS01 J94 ? GO:0004888 ... Q8WSF8 31859406
    388987 5obh:A (2.4) BS02 J94 ? GO:0004888 ... Q8WSF8 31859406
    388988 5obh:B (2.4) BS01 J94 ? GO:0004888 ... Q8WSF8 31859406
    388989 5obh:B (2.4) BS02 J94 ? GO:0004888 ... Q8WSF8 31859406
    388990 5obh:C (2.4) BS01 J94 ? GO:0004888 ... Q8WSF8 31859406
    388991 5obh:C (2.4) BS02 J94 ? GO:0004888 ... Q8WSF8 31859406
    388992 5obh:D (2.4) BS01 J94 ? GO:0004888 ... Q8WSF8 31859406
    388993 5obh:D (2.4) BS02 J94 ? GO:0004888 ... Q8WSF8 31859406
    388994 5obh:E (2.4) BS01 J94 ? GO:0004888 ... Q8WSF8 31859406
    388995 5obh:E (2.4) BS02 J94 ? GO:0004888 ... Q8WSF8 31859406
    388996 5obi:A (1.599) BS01 SF4 N/A N/A N/A 29378885
    388997 5obi:A (1.599) BS02 SF4 N/A N/A N/A 29378885
    388998 5obi:A (1.599) BS03 OBL N/A N/A N/A 29378885
    388999 5obi:B (1.599) BS01 SF4 N/A N/A N/A 29378885
    389000 5obi:B (1.599) BS02 SF4 N/A N/A N/A 29378885

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).