SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    389801 5oes:C (2.48) BS03 MG 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389802 5oes:D (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389803 5oes:D (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389804 5oes:D (2.48) BS03 MG 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389805 5oes:D (2.48) BS04 MG 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389806 5oes:E (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389807 5oes:E (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389808 5oes:E (2.48) BS03 MG 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389809 5oes:E (2.48) BS04 MG 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389810 5oes:F (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389811 5oes:F (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389812 5oes:F (2.48) BS03 MG 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    389813 5oet:B (2.57) BS01 MG 6.3.2.3 GO:0004363 ... A0A183C5H8 29641602
    389814 5oeu:A (2.57) BS01 ADP ? GO:0004363 ... A0A183CD52 29641602
    389815 5oeu:A (2.57) BS02 MG ? GO:0004363 ... A0A183CD52 29641602
    389816 5oeu:C (2.57) BS01 ADP ? GO:0004363 ... A0A183CD52 29641602
    389817 5oeu:C (2.57) BS02 MG ? GO:0004363 ... A0A183CD52 29641602
    389818 5oew:A (2.0) BS01 GLU ? GO:0015276 ... P19491 29256599
    389819 5oew:A (2.0) BS02 ZN ? GO:0015276 ... P19491 29256599
    389820 5oew:A (2.0) BS03 9TE ? GO:0015276 ... P19491 29256599
    389821 5oew:B (2.0) BS01 9TE ? GO:0015276 ... P19491 29256599
    389822 5oew:B (2.0) BS02 GLU ? GO:0015276 ... P19491 29256599
    389823 5oew:B (2.0) BS03 ZN ? GO:0015276 ... P19491 29256599
    389824 5oew:C (2.0) BS01 9TE ? GO:0015276 ... P19491 29256599
    389825 5oew:C (2.0) BS02 GLU ? GO:0015276 ... P19491 29256599
    389826 5oew:C (2.0) BS03 ZN ? GO:0015276 ... P19491 29256599
    389827 5oew:C (2.0) BS04 ZN ? GO:0015276 ... P19491 29256599
    389828 5oex:A (2.0) BS01 CU ? N/A W0DP94 N/A
    389829 5oex:A (2.0) BS02 CU ? N/A W0DP94 N/A
    389830 5oex:A (2.0) BS03 CU ? N/A W0DP94 N/A
    389831 5oex:A (2.0) BS04 CU ? N/A W0DP94 N/A
    389832 5oex:B (2.0) BS01 CU ? N/A W0DP94 N/A
    389833 5oex:B (2.0) BS02 CU ? N/A W0DP94 N/A
    389834 5oex:B (2.0) BS03 CU ? N/A W0DP94 N/A
    389835 5oex:C (2.0) BS01 CU ? N/A W0DP94 N/A
    389836 5oex:C (2.0) BS02 CU ? N/A W0DP94 N/A
    389837 5oex:C (2.0) BS03 CU ? N/A W0DP94 N/A
    389838 5oex:C (2.0) BS04 CU ? N/A W0DP94 N/A
    389839 5oex:D (2.0) BS01 CU ? N/A W0DP94 N/A
    389840 5oex:D (2.0) BS02 CU ? N/A W0DP94 N/A
    389841 5oex:D (2.0) BS03 CU ? N/A W0DP94 N/A
    389842 5oex:D (2.0) BS04 CU ? N/A W0DP94 N/A
    389843 5oey:A (2.8) BS01 PO4 3.1.3.11 GO:0000166 ... O97193 28882541
    389844 5oey:A (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389845 5oey:A (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389846 5oey:B (2.8) BS01 PO4 3.1.3.11 GO:0000166 ... O97193 28882541
    389847 5oey:B (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389848 5oey:B (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389849 5oey:C (2.8) BS01 PO4 3.1.3.11 GO:0000166 ... O97193 28882541
    389850 5oey:C (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389851 5oey:C (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389852 5oey:D (2.8) BS01 PO4 3.1.3.11 GO:0000166 ... O97193 28882541
    389853 5oey:D (2.8) BS02 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389854 5oey:D (2.8) BS03 MN 3.1.3.11 GO:0000166 ... O97193 28882541
    389855 5of0:A (1.48) BS01 MAN 3.4.17.21 GO:0004180 ... Q04609 30429952
    389856 5of0:A (1.48) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30429952
    389857 5of0:A (1.48) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 30429952
    389858 5of0:A (1.48) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    389859 5of0:A (1.48) BS05 9TB 3.4.17.21 GO:0004180 ... Q04609 30429952 BindingDB: IC50=2.3nM
    389860 5of3:A (2.906) BS01 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389861 5of3:A (2.906) BS02 MN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389862 5of3:A (2.906) BS03 ZN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389863 5of3:A (2.906) BS04 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389864 5of3:C (2.906) BS01 APC ? GO:0046872 ... Q97ZS7 29167441
    389865 5of3:D (2.906) BS01 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389866 5of3:D (2.906) BS02 MN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389867 5of3:D (2.906) BS03 ZN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389868 5of3:D (2.906) BS04 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389869 5of3:F (2.906) BS01 APC ? GO:0046872 ... Q97ZS7 29167441
    389870 5of4:B (4.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 28902838
    389871 5of5:A (1.08) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389872 5of5:A (1.08) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389873 5of5:A (1.08) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389874 5of5:A (1.08) BS04 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389875 5of5:A (1.08) BS05 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389876 5of5:A (1.08) BS06 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389877 5of5:A (1.08) BS07 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389878 5of5:A (1.08) BS08 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389879 5of6:A (1.08) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389880 5of6:A (1.08) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389881 5of6:A (1.08) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389882 5of6:A (1.08) BS04 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389883 5of6:A (1.08) BS05 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389884 5of6:A (1.08) BS06 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389885 5of6:A (1.08) BS07 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389886 5of7:A (1.27) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389887 5of7:A (1.27) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389888 5of7:A (1.27) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389889 5of7:A (1.27) BS04 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389890 5of7:A (1.27) BS05 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389891 5of7:A (1.27) BS06 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389892 5of7:A (1.27) BS07 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389893 5of8:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389894 5of8:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389895 5of8:A (1.34) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389896 5of8:A (1.34) BS04 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389897 5of8:A (1.34) BS05 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389898 5of9:A (1.807) BS01 ZN 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389899 5of9:A (1.807) BS02 ANP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389900 5of9:B (1.807) BS01 ZN 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389901 5of9:B (1.807) BS02 ANP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389902 5ofa:A (2.57) BS01 ZN 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389903 5ofa:A (2.57) BS02 ANP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389904 5ofa:B (2.57) BS01 ZN 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389905 5ofa:B (2.57) BS02 ANP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389906 5ofb:A (2.02) BS01 ZN 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389907 5ofb:A (2.02) BS02 ATP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389908 5ofb:B (2.02) BS01 ZN 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389909 5ofb:B (2.02) BS02 ATP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389910 5ofb:B (2.02) BS03 MG 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    389911 5ofc:A (1.68) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389912 5ofc:A (1.68) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389913 5ofc:A (1.68) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389914 5ofd:A (1.77) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389915 5ofd:A (1.77) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389916 5ofd:A (1.77) BS03 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389917 5ofe:A (1.84) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389918 5ofe:A (1.84) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389919 5ofe:A (1.84) BS03 NO 1.7.2.1 GO:0005507 ... P25006 29755744
    389920 5off:A (1.41) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389921 5off:A (1.41) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389922 5off:A (1.41) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389923 5off:A (1.41) BS04 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389924 5off:A (1.41) BS05 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389925 5off:A (1.41) BS06 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389926 5ofg:A (1.49) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389927 5ofg:A (1.49) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389928 5ofg:A (1.49) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389929 5ofg:A (1.49) BS04 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389930 5ofg:A (1.49) BS05 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389931 5ofg:A (1.49) BS06 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389932 5ofg:A (1.49) BS07 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389933 5ofh:A (1.58) BS01 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389934 5ofh:A (1.58) BS02 CU 1.7.2.1 GO:0005507 ... P25006 29755744
    389935 5ofh:A (1.58) BS03 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389936 5ofh:A (1.58) BS04 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389937 5ofh:A (1.58) BS05 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389938 5ofh:A (1.58) BS06 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389939 5ofh:A (1.58) BS07 NO2 1.7.2.1 GO:0005507 ... P25006 29755744
    389940 5ofi:A (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389941 5ofi:A (2.0) BS02 9TQ ? GO:0030246 ... Q7N561 28972138 MOAD: Kd=62.7uM
    389942 5ofi:B (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389943 5ofi:B (2.0) BS02 9TQ ? GO:0030246 ... Q7N561 28972138 MOAD: Kd=62.7uM
    389944 5ofi:C (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389945 5ofi:C (2.0) BS02 9TQ ? GO:0030246 ... Q7N561 28972138 MOAD: Kd=62.7uM
    389946 5ofi:D (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389947 5ofi:D (2.0) BS02 9TQ ? GO:0030246 ... Q7N561 28972138 MOAD: Kd=62.7uM
    389948 5ofi:E (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389949 5ofi:F (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389950 5ofi:G (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389951 5ofi:H (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    389952 5ofk:A (1.16) BS01 XYP ? GO:0004553 ... B9MKT7 28974575
    389953 5ofk:A (1.16) BS02 XYP ? GO:0004553 ... B9MKT7 28974575
    389954 5ofk:A (1.16) BS03 XYP ? GO:0004553 ... B9MKT7 28974575
    389955 5ofk:A (1.16) BS04 XYP ? GO:0004553 ... B9MKT7 28974575
    389956 5ofk:A (1.16) BS05 PIN ? GO:0004553 ... B9MKT7 28974575
    389957 5ofl:A (1.871) BS01 BGC ? GO:0004553 ... B9MKT7 28974575
    389958 5ofl:A (1.871) BS02 BGC ? GO:0004553 ... B9MKT7 28974575
    389959 5ofl:A (1.871) BS03 BGC ? GO:0004553 ... B9MKT7 28974575
    389960 5ofl:A (1.871) BS04 BGC ? GO:0004553 ... B9MKT7 28974575
    389961 5ofm:A (1.5) BS01 9TT 1.1.1.37
    1.1.1.399
    1.1.1.95
    GO:0016616 ... O43175 N/A
    389962 5ofm:B (1.5) BS01 9TT 1.1.1.37
    1.1.1.399
    1.1.1.95
    GO:0016616 ... O43175 N/A
    389963 5ofn:A (3.005) BS01 ZN 2.7.7.- GO:0000428 ... Q97Z83 29167441
    389964 5ofo:A (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389965 5ofo:B (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389966 5ofo:B (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389967 5ofo:C (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389968 5ofo:C (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389969 5ofo:C (4.6) BS03 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389970 5ofo:D (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389971 5ofo:D (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389972 5ofo:E (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389973 5ofo:E (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389974 5ofo:E (4.6) BS03 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389975 5ofo:F (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389976 5ofo:F (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284
    28798962
    389977 5ofq:A (2.7) BS01 HEM 1.14.-.- GO:0004497 ... D5DF88 28940959
    389978 5ofq:B (2.7) BS01 HEM 1.14.-.- GO:0004497 ... D5DF88 28940959
    389979 5ofq:C (2.7) BS01 HEM 1.14.-.- GO:0004497 ... D5DF88 28940959
    389980 5ofq:D (2.7) BS01 HEM 1.14.-.- GO:0004497 ... D5DF88 28940959
    389981 5ofr:A (3.4) BS01 ADP ? GO:0005524 ... Q9X2W0 28864543
    389982 5ofr:A (3.4) BS02 MG ? GO:0005524 ... Q9X2W0 28864543
    389983 5ofr:A (3.4) BS03 ADP ? GO:0005524 ... Q9X2W0 28864543
    389984 5ofr:B (3.4) BS01 ADP ? GO:0005524 ... Q9X2W0 28864543
    389985 5ofr:B (3.4) BS02 ADP ? GO:0005524 ... Q9X2W0 28864543
    389986 5ofr:B (3.4) BS03 MG ? GO:0005524 ... Q9X2W0 28864543
    389987 5ofs:A (1.1) BS01 ZN N/A GO:0005618 ... N/A 29336153
    389988 5ofs:B (1.1) BS01 ZN N/A GO:0005618 ... N/A 29336153
    389989 5ofs:C (1.1) BS01 ZN N/A GO:0005618 ... N/A 29336153
    389990 5ofs:D (1.1) BS01 ZN N/A GO:0005618 ... N/A 29336153
    389991 5ofu:A (2.62) BS01 AMP 3.1.3.11 GO:0000166 ... O97193 28882541
    389992 5ofu:A (2.62) BS02 F6P 3.1.3.11 GO:0000166 ... O97193 28882541
    389993 5ofu:B (2.62) BS01 AMP 3.1.3.11 GO:0000166 ... O97193 28882541
    389994 5ofu:B (2.62) BS02 F6P 3.1.3.11 GO:0000166 ... O97193 28882541
    389995 5ofu:C (2.62) BS01 AMP 3.1.3.11 GO:0000166 ... O97193 28882541
    389996 5ofu:C (2.62) BS02 F6P 3.1.3.11 GO:0000166 ... O97193 28882541
    389997 5ofu:D (2.62) BS01 AMP 3.1.3.11 GO:0000166 ... O97193 28882541
    389998 5ofu:D (2.62) BS02 F6P 3.1.3.11 GO:0000166 ... O97193 28882541
    389999 5ofv:A (1.5) BS01 9TZ 1.1.1.37
    1.1.1.399
    1.1.1.95
    GO:0016616 ... O43175 29568346 MOAD: Kd=26.2mM
    390000 5ofv:B (1.5) BS01 9TZ 1.1.1.37
    1.1.1.399
    1.1.1.95
    GO:0016616 ... O43175 29568346 MOAD: Kd=26.2mM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).