SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    390601 5oly:A (2.0) BS01 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    390602 5oly:A (2.0) BS02 MG 5.4.2.6 GO:0000287 ... P71447 29619190
    390603 5oly:A (2.0) BS03 G6P 5.4.2.6 GO:0000287 ... P71447 29619190
    390604 5oly:G (2.0) BS01 MG 5.4.2.6 GO:0000287 ... P71447 29619190
    390605 5oly:G (2.0) BS02 G6P 5.4.2.6 GO:0000287 ... P71447 29619190
    390606 5oly:G (2.0) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    390607 5olz:A (1.9) BS01 T4E ? GO:0001609 ... P0ABE7
    P29274
    29311713 MOAD: Kd=250pM
    390608 5olz:A (1.9) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390609 5olz:A (1.9) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390610 5olz:A (1.9) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390611 5olz:A (1.9) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390612 5om1:A (2.1) BS01 T4E ? GO:0001609 ... P0ABE7
    P29274
    29311713 MOAD: Kd=250pM
    390613 5om1:A (2.1) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390614 5om1:A (2.1) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390615 5om1:A (2.1) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390616 5om1:A (2.1) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390617 5om2:A (1.47) BS01 DXT ? GO:0003677 ... P01011 29760101
    390618 5om2:B (1.47) BS01 DXT ? N/A P01011 29760101
    390619 5om3:A (2.0) BS01 DXT ? GO:0003677 ... P01011 29760101
    390620 5om3:B (2.0) BS01 DXT ? N/A P01011 29760101
    390621 5om4:A (2.0) BS01 T4E ? GO:0001609 ... P0ABE7
    P29274
    29311713 MOAD: Kd=250pM
    390622 5om4:A (2.0) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390623 5om4:A (2.0) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390624 5om4:A (2.0) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    29311713
    390625 5om7:A (1.727) BS01 DM2 ? GO:0003677 ... P01011 29760101
    390626 5om7:B (1.727) BS01 DM2 ? N/A P01011 29760101
    390627 5om9:A (1.8) BS01 O2S 3.4.17.1 GO:0004181 ... P15085 29057062
    390628 5om9:A (1.8) BS02 ZN 3.4.17.1 GO:0004181 ... P15085 29057062
    390629 5om9:B (1.8) BS01 O2S 3.4.17.1 GO:0004181 ... P15085 29057062
    390630 5om9:B (1.8) BS02 ZN 3.4.17.1 GO:0004181 ... P15085 29057062
    390631 5om9:B (1.8) BS03 ZN 3.4.17.1 GO:0004181 ... P15085 29057062
    390632 5ome:A (0.747) BS01 FE ? GO:0005506 ... P24297 N/A
    390633 5omf:A (2.092) BS01 dna 2.7.7.7
    3.1.-.-
    GO:0000166 ... P77933 29211756
    390634 5omf:A (2.092) BS02 dna 2.7.7.7
    3.1.-.-
    GO:0000166 ... P77933 29211756
    390635 5omf:A (2.092) BS03 MN 2.7.7.7
    3.1.-.-
    GO:0000166 ... P77933 29211756
    390636 5omf:A (2.092) BS04 MN 2.7.7.7
    3.1.-.-
    GO:0000166 ... P77933 29211756
    390637 5omf:A (2.092) BS05 MG 2.7.7.7
    3.1.-.-
    GO:0000166 ... P77933 29211756
    390638 5omf:A (2.092) BS06 DTP 2.7.7.7
    3.1.-.-
    GO:0000166 ... P77933 29211756
    390639 5omg:A (2.0) BS01 9Y8 2.7.11.24 GO:0000077 ... Q16539 30824186
    390640 5omh:A (2.5) BS01 9Y5 2.7.11.24 GO:0000077 ... Q16539 30824186
    390641 5omj:A (2.005) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    390642 5omj:A (2.005) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    390643 5omk:A (1.704) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    390644 5omk:A (1.704) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    390645 5oml:A (1.5) BS01 9YB ? GO:0005778 ... Q8IEW2 N/A
    390646 5oml:B (1.5) BS01 9YB ? GO:0005778 ... Q8IEW2 N/A
    390647 5oml:C (1.5) BS01 9YB ? GO:0005778 ... Q8IEW2 N/A
    390648 5oml:D (1.5) BS01 9YB ? GO:0005778 ... Q8IEW2 N/A
    390649 5oml:D (1.5) BS02 9YB ? GO:0005778 ... Q8IEW2 N/A
    390650 5omo:A (2.49) BS01 HSC 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 N/A
    390651 5omo:A (2.49) BS02 ZOZ 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 N/A
    390652 5omo:B (2.49) BS01 HSC 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 N/A
    390653 5omq:A (2.199) BS01 dna 2.7.7.7 GO:0000166 ... Q56366 29211756
    390654 5omq:A (2.199) BS02 dna 2.7.7.7 GO:0000166 ... Q56366 29211756
    390655 5omq:A (2.199) BS03 MG 2.7.7.7 GO:0000166 ... Q56366 29211756
    390656 5omq:A (2.199) BS04 MG 2.7.7.7 GO:0000166 ... Q56366 29211756
    390657 5omq:A (2.199) BS05 MN 2.7.7.7 GO:0000166 ... Q56366 29211756
    390658 5omq:A (2.199) BS06 DTP 2.7.7.7 GO:0000166 ... Q56366 29211756
    390659 5omr:A (1.68) BS01 HEM ? GO:0004497 ... A0A3B6UEE9 29950589
    390660 5omr:A (1.68) BS02 V55 ? GO:0004497 ... A0A3B6UEE9 29950589
    390661 5oms:A (1.95) BS01 HEM ? GO:0004497 ... A0A3B6UEE9 29950589
    390662 5oms:A (1.95) BS02 261 ? GO:0004497 ... A0A3B6UEE9 29950589
    390663 5omu:A (1.95) BS01 HEM ? GO:0004497 ... A0A076MY51 29950589
    390664 5omu:A (1.95) BS02 3DM ? GO:0004497 ... A0A076MY51 29950589
    390665 5omv:A (2.003) BS01 dna 2.7.7.7 GO:0000166 ... Q56366 29211756
    390666 5omv:A (2.003) BS02 dna 2.7.7.7 GO:0000166 ... Q56366 29211756
    390667 5omv:A (2.003) BS03 MN 2.7.7.7 GO:0000166 ... Q56366 29211756
    390668 5omv:A (2.003) BS04 MG 2.7.7.7 GO:0000166 ... Q56366 29211756
    390669 5omv:A (2.003) BS05 DTP 2.7.7.7 GO:0000166 ... Q56366 29211756
    390670 5omw:A (2.6) BS01 rna 6.1.1.4 GO:0000166 ... P07813 29111343
    390671 5omw:A (2.6) BS02 LSS 6.1.1.4 GO:0000166 ... P07813 29111343 BindingDB: Ki=0.139000nM
    390672 5omw:D (2.6) BS01 rna 6.1.1.4 GO:0000166 ... P07813 29111343
    390673 5omw:D (2.6) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    390674 5omw:D (2.6) BS03 LSS 6.1.1.4 GO:0000166 ... P07813 29111343 BindingDB: Ki=0.139000nM
    390675 5omx:A (2.32) BS01 dna ? GO:0000786 ... P84233 29113904
    390676 5omx:A (2.32) BS02 dna ? GO:0000786 ... P84233 29113904
    390677 5omx:B (2.32) BS01 dna ? GO:0000786 ... P62799 29113904
    390678 5omx:B (2.32) BS02 dna ? GO:0000786 ... P62799 29113904
    390679 5omx:C (2.32) BS01 dna ? GO:0000786 ... P06897 29113904
    390680 5omx:C (2.32) BS02 dna ? GO:0000786 ... P06897 29113904
    390681 5omx:D (2.32) BS01 dna ? GO:0000786 ... P02281 29113904
    390682 5omx:D (2.32) BS02 dna ? GO:0000786 ... P02281 29113904
    390683 5omx:E (2.32) BS01 dna ? GO:0000786 ... P84233 29113904
    390684 5omx:E (2.32) BS02 dna ? GO:0000786 ... P84233 29113904
    390685 5omx:F (2.32) BS01 dna ? GO:0000786 ... P62799 29113904
    390686 5omx:F (2.32) BS02 dna ? GO:0000786 ... P62799 29113904
    390687 5omx:G (2.32) BS01 dna ? GO:0000786 ... P06897 29113904
    390688 5omx:G (2.32) BS02 dna ? GO:0000786 ... P06897 29113904
    390689 5omx:H (2.32) BS01 dna ? GO:0000786 ... P02281 29113904
    390690 5omx:H (2.32) BS02 dna ? GO:0000786 ... P02281 29113904
    390691 5omy:A (1.95) BS01 9YE 2.7.11.1 GO:0004672 ... P68400 29236079
    390692 5on0:A (1.9) BS01 9YH ? GO:0005515 ... P33590 29148757
    390693 5on0:B (1.9) BS01 9YH ? GO:0005515 ... P33590 29148757
    390694 5on1:A (1.7) BS01 9YK ? GO:0005515 ... P33590 29148757
    390695 5on1:B (1.7) BS01 9YK ? GO:0005515 ... P33590 29148757
    390696 5on2:A (3.1) BS01 rna 6.1.1.4 GO:0000166 ... P07813 29111343
    390697 5on2:A (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    390698 5on2:A (3.1) BS03 LSS 6.1.1.4 GO:0000166 ... P07813 29111343 BindingDB: Ki=0.139000nM
    390699 5on2:A (3.1) BS04 VRT 6.1.1.4 GO:0000166 ... P07813 29111343
    390700 5on2:D (3.1) BS01 rna 6.1.1.4 GO:0000166 ... P07813 29111343
    390701 5on2:D (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    390702 5on2:D (3.1) BS03 LSS 6.1.1.4 GO:0000166 ... P07813 29111343 BindingDB: Ki=0.139000nM
    390703 5on2:D (3.1) BS04 VRT 6.1.1.4 GO:0000166 ... P07813 29111343
    390704 5on3:A (3.1) BS01 rna 6.1.1.4 GO:0000166 ... P07813 29111343
    390705 5on3:A (3.1) BS02 ZN 6.1.1.4 GO:0000166 ... P07813 29111343
    390706 5on3:A (3.1) BS03 LSS 6.1.1.4 GO:0000166 ... P07813 29111343 BindingDB: Ki=0.139000nM
    390707 5on3:A (3.1) BS04 9YN 6.1.1.4 GO:0000166 ... P07813 29111343
    390708 5on3:D (3.1) BS01 rna 6.1.1.4 GO:0000166 ... P07813 29111343
    390709 5on3:D (3.1) BS02 LSS 6.1.1.4 GO:0000166 ... P07813 29111343 BindingDB: Ki=0.139000nM
    390710 5on3:D (3.1) BS03 9YN 6.1.1.4 GO:0000166 ... P07813 29111343
    390711 5on4:A (2.3) BS01 9YK ? GO:0005515 ... P33590 29148757
    390712 5on4:B (2.3) BS01 9YK ? GO:0005515 ... P33590 29148757
    390713 5on5:A (1.7) BS01 9YH ? GO:0005515 ... P33590 29148757
    390714 5on5:B (1.7) BS01 9YH ? GO:0005515 ... P33590 29148757
    390715 5on6:0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 29429877
    390716 5on6:0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 29429877
    390717 5on6:2 (3.1) BS01 rna ? GO:0002181 ... Q02753 29429877
    390718 5on6:2 (3.1) BS02 rna ? GO:0002181 ... Q02753 29429877
    390719 5on6:2 (3.1) BS03 OHX ? GO:0002181 ... Q02753 29429877
    390720 5on6:5 (3.1) BS01 rna ? GO:0003735 ... P05749 29429877
    390721 5on6:7 (3.1) BS01 rna ? GO:0003735 ... P04449 29429877
    390722 5on6:7 (3.1) BS02 rna ? GO:0003735 ... P04449 29429877
    390723 5on6:8 (3.1) BS01 rna ? GO:0003735 ... P04456 29429877
    390724 5on6:8 (3.1) BS02 rna ? GO:0003735 ... P04456 29429877
    390725 5on6:9 (3.1) BS01 rna ? GO:0002181 ... P05743 29429877
    390726 5on6:9 (3.1) BS02 rna ? GO:0002181 ... P05743 29429877
    390727 5on6:AA (3.1) BS01 rna ? GO:0002181 ... P0C2H6 29429877
    390728 5on6:AB (3.1) BS01 rna ? GO:0002181 ... P02406 29429877
    390729 5on6:AB (3.1) BS02 MG ? GO:0002181 ... P02406 29429877
    390730 5on6:AB (3.1) BS03 MG ? GO:0002181 ... P02406 29429877
    390731 5on6:AB (3.1) BS04 MG ? GO:0002181 ... P02406 29429877
    390732 5on6:AC (3.1) BS01 rna ? GO:0002181 ... P05747 29429877
    390733 5on6:AC (3.1) BS02 OHX ? GO:0002181 ... P05747 29429877
    390734 5on6:AD (3.1) BS01 rna ? GO:0002181 ... P14120 29429877
    390735 5on6:AE (3.1) BS01 rna ? GO:0002181 ... P0C2H8 29429877
    390736 5on6:AE (3.1) BS02 OHX ? GO:0002181 ... P0C2H8 29429877
    390737 5on6:AF (3.1) BS01 rna ? GO:0002181 ... P38061 29429877
    390738 5on6:AF (3.1) BS02 OHX ? GO:0002181 ... P38061 29429877
    390739 5on6:AF (3.1) BS03 MG ? GO:0002181 ... P38061 29429877
    390740 5on6:AG (3.1) BS01 rna ? GO:0000027 ... P05744 29429877
    390741 5on6:AG (3.1) BS02 OHX ? GO:0000027 ... P05744 29429877
    390742 5on6:AH (3.1) BS01 rna ? GO:0002181 ... P87262 29429877
    390743 5on6:AI (3.1) BS01 rna ? GO:0000463 ... P0CX84 29429877
    390744 5on6:AI (3.1) BS02 rna ? GO:0000463 ... P0CX84 29429877
    390745 5on6:AJ (3.1) BS01 rna ? GO:0002181 ... P05745 29429877
    390746 5on6:AK (3.1) BS01 rna ? GO:0000448 ... P49166 29429877
    390747 5on6:AK (3.1) BS02 rna ? GO:0000448 ... P49166 29429877
    390748 5on6:AK (3.1) BS03 OHX ? GO:0000448 ... P49166 29429877
    390749 5on6:AK (3.1) BS04 ZN ? GO:0000448 ... P49166 29429877
    390750 5on6:AK (3.1) BS05 OHX ? GO:0000448 ... P49166 29429877
    390751 5on6:AL (3.1) BS01 rna ? GO:0002181 ... P49167 29429877
    390752 5on6:AM (3.1) BS01 rna ? GO:0002181 ... P04650 29429877
    390753 5on6:AM (3.1) BS02 rna ? GO:0002181 ... P04650 29429877
    390754 5on6:AM (3.1) BS03 OHX ? GO:0002181 ... P04650 29429877
    390755 5on6:AN (3.1) BS01 rna ? GO:0003735 ... P0CH08 29429877
    390756 5on6:AN (3.1) BS02 ZN ? GO:0003735 ... P0CH08 29429877
    390757 5on6:AP (3.1) BS01 rna ? GO:0002181 ... P0CX27 29429877
    390758 5on6:AP (3.1) BS02 ZN ? GO:0002181 ... P0CX27 29429877
    390759 5on6:AP (3.1) BS03 OHX ? GO:0002181 ... P0CX27 29429877
    390760 5on6:AQ (3.1) BS01 rna ? GO:0002181 ... P0CX25 29429877
    390761 5on6:AQ (3.1) BS02 ZN ? GO:0002181 ... P0CX25 29429877
    390762 5on6:B (3.1) BS01 rna ? GO:0003735 ... P32905 29429877
    390763 5on6:C (3.1) BS01 rna ? GO:0003735 ... P33442 29429877
    390764 5on6:CD (3.1) BS01 rna ? GO:0002181 ... P0CX45 29429877
    390765 5on6:CD (3.1) BS02 rna ? GO:0002181 ... P0CX45 29429877
    390766 5on6:CD (3.1) BS03 MG ? GO:0002181 ... P0CX45 29429877
    390767 5on6:CD (3.1) BS04 MG ? GO:0002181 ... P0CX45 29429877
    390768 5on6:CD (3.1) BS05 MG ? GO:0002181 ... P0CX45 29429877
    390769 5on6:CE (3.1) BS01 rna ? GO:0000027 ... P14126 29429877
    390770 5on6:CE (3.1) BS02 OHX ? GO:0000027 ... P14126 29429877
    390771 5on6:CE (3.1) BS03 OHX ? GO:0000027 ... P14126 29429877
    390772 5on6:CE (3.1) BS04 OHX ? GO:0000027 ... P14126 29429877
    390773 5on6:CE (3.1) BS05 MG ? GO:0000027 ... P14126 29429877
    390774 5on6:CE (3.1) BS06 MG ? GO:0000027 ... P14126 29429877
    390775 5on6:CE (3.1) BS07 MG ? GO:0000027 ... P14126 29429877
    390776 5on6:CF (3.1) BS01 rna ? GO:0002181 ... P10664 29429877
    390777 5on6:CF (3.1) BS02 rna ? GO:0002181 ... P10664 29429877
    390778 5on6:CF (3.1) BS03 OHX ? GO:0002181 ... P10664 29429877
    390779 5on6:CF (3.1) BS04 OHX ? GO:0002181 ... P10664 29429877
    390780 5on6:CG (3.1) BS01 rna ? GO:0000027 ... P26321 29429877
    390781 5on6:CG (3.1) BS02 rna ? GO:0000027 ... P26321 29429877
    390782 5on6:CG (3.1) BS03 OHX ? GO:0000027 ... P26321 29429877
    390783 5on6:CG (3.1) BS04 MG ? GO:0000027 ... P26321 29429877
    390784 5on6:CH (3.1) BS01 rna ? GO:0000027 ... Q02326 29429877
    390785 5on6:CI (3.1) BS01 rna ? GO:0000463 ... P05737 29429877
    390786 5on6:CI (3.1) BS02 rna ? GO:0000463 ... P05737 29429877
    390787 5on6:CI (3.1) BS03 OHX ? GO:0000463 ... P05737 29429877
    390788 5on6:CJ (3.1) BS01 rna ? GO:0000470 ... P17076 29429877
    390789 5on6:CJ (3.1) BS02 rna ? GO:0000470 ... P17076 29429877
    390790 5on6:CK (3.1) BS01 rna ? GO:0002181 ... P05738 29429877
    390791 5on6:CK (3.1) BS02 OHX ? GO:0002181 ... P05738 29429877
    390792 5on6:CL (3.1) BS01 rna ? GO:0000027 ... P41805 29429877
    390793 5on6:CL (3.1) BS02 rna ? GO:0000027 ... P41805 29429877
    390794 5on6:CM (3.1) BS01 rna ? GO:0000027 ... Q3E757 29429877
    390795 5on6:CM (3.1) BS02 rna ? GO:0000027 ... Q3E757 29429877
    390796 5on6:CM (3.1) BS03 OHX ? GO:0000027 ... Q3E757 29429877
    390797 5on6:CN (3.1) BS01 rna ? GO:0002181 ... Q12690 29429877
    390798 5on6:CN (3.1) BS02 rna ? GO:0002181 ... Q12690 29429877
    390799 5on6:CO (3.1) BS01 rna ? GO:0000027 ... P36105 29429877
    390800 5on6:CP (3.1) BS01 rna ? GO:0002181 ... P05748 29429877

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).