SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    390801 5on6:CP (3.1) BS02 rna ? GO:0002181 ... P05748 29429877
    390802 5on6:CP (3.1) BS03 OHX ? GO:0002181 ... P05748 29429877
    390803 5on6:CP (3.1) BS04 MG ? GO:0002181 ... P05748 29429877
    390804 5on6:CQ (3.1) BS01 rna ? GO:0000470 ... P26784 29429877
    390805 5on6:CQ (3.1) BS02 MG ? GO:0000470 ... P26784 29429877
    390806 5on6:CR (3.1) BS01 rna ? GO:0000448 ... P05740 29429877
    390807 5on6:CR (3.1) BS02 rna ? GO:0000448 ... P05740 29429877
    390808 5on6:CS (3.1) BS01 rna ? GO:0002181 ... P0CX49 29429877
    390809 5on6:CT (3.1) BS01 rna ? GO:0002181 ... P0CX82 29429877
    390810 5on6:CT (3.1) BS02 rna ? GO:0002181 ... P0CX82 29429877
    390811 5on6:CU (3.1) BS01 rna ? GO:0002181 ... P0CX23 29429877
    390812 5on6:CU (3.1) BS02 rna ? GO:0002181 ... P0CX23 29429877
    390813 5on6:CV (3.1) BS01 rna ? GO:0002181 ... Q02753 29429877
    390814 5on6:CV (3.1) BS02 rna ? GO:0002181 ... Q02753 29429877
    390815 5on6:CV (3.1) BS03 MG ? GO:0002181 ... Q02753 29429877
    390816 5on6:CV (3.1) BS04 OHX ? GO:0002181 ... Q02753 29429877
    390817 5on6:CW (3.1) BS01 rna ? GO:0003735 ... P05749 29429877
    390818 5on6:CX (3.1) BS01 rna ? GO:0002181 ... P0CX41 29429877
    390819 5on6:CX (3.1) BS02 rna ? GO:0002181 ... P0CX41 29429877
    390820 5on6:CX (3.1) BS03 OHX ? GO:0002181 ... P0CX41 29429877
    390821 5on6:CX (3.1) BS04 MG ? GO:0002181 ... P0CX41 29429877
    390822 5on6:CY (3.1) BS01 rna ? GO:0003735 ... P04449 29429877
    390823 5on6:CY (3.1) BS02 rna ? GO:0003735 ... P04449 29429877
    390824 5on6:CZ (3.1) BS01 rna ? GO:0003735 ... P04456 29429877
    390825 5on6:CZ (3.1) BS02 rna ? GO:0003735 ... P04456 29429877
    390826 5on6:D (3.1) BS01 rna ? GO:0003723 ... P25443 29429877
    390827 5on6:DA (3.1) BS01 rna ? GO:0002181 ... P05743 29429877
    390828 5on6:DA (3.1) BS02 rna ? GO:0002181 ... P05743 29429877
    390829 5on6:DA (3.1) BS03 OHX ? GO:0002181 ... P05743 29429877
    390830 5on6:DB (3.1) BS01 rna ? GO:0002181 ... P0C2H6 29429877
    390831 5on6:DC (3.1) BS01 rna ? GO:0002181 ... P02406 29429877
    390832 5on6:DD (3.1) BS01 rna ? GO:0002181 ... P05747 29429877
    390833 5on6:DD (3.1) BS02 OHX ? GO:0002181 ... P05747 29429877
    390834 5on6:DE (3.1) BS01 rna ? GO:0002181 ... P14120 29429877
    390835 5on6:DF (3.1) BS01 rna ? GO:0002181 ... P0C2H8 29429877
    390836 5on6:DG (3.1) BS01 rna ? GO:0002181 ... P38061 29429877
    390837 5on6:DH (3.1) BS01 rna ? GO:0000027 ... P05744 29429877
    390838 5on6:DH (3.1) BS02 OHX ? GO:0000027 ... P05744 29429877
    390839 5on6:DH (3.1) BS03 MG ? GO:0000027 ... P05744 29429877
    390840 5on6:DI (3.1) BS01 rna ? GO:0002181 ... P87262 29429877
    390841 5on6:DI (3.1) BS02 MG ? GO:0002181 ... P87262 29429877
    390842 5on6:DJ (3.1) BS01 rna ? GO:0000463 ... P0CX84 29429877
    390843 5on6:DJ (3.1) BS02 rna ? GO:0000463 ... P0CX84 29429877
    390844 5on6:DK (3.1) BS01 rna ? GO:0002181 ... P05745 29429877
    390845 5on6:DL (3.1) BS01 rna ? GO:0000448 ... P49166 29429877
    390846 5on6:DL (3.1) BS02 rna ? GO:0000448 ... P49166 29429877
    390847 5on6:DL (3.1) BS03 OHX ? GO:0000448 ... P49166 29429877
    390848 5on6:DL (3.1) BS04 ZN ? GO:0000448 ... P49166 29429877
    390849 5on6:DM (3.1) BS01 rna ? GO:0002181 ... P49167 29429877
    390850 5on6:DN (3.1) BS01 rna ? GO:0002181 ... P04650 29429877
    390851 5on6:DN (3.1) BS02 rna ? GO:0002181 ... P04650 29429877
    390852 5on6:DO (3.1) BS01 rna ? GO:0003735 ... P0CH08 29429877
    390853 5on6:DO (3.1) BS02 MG ? GO:0003735 ... P0CH08 29429877
    390854 5on6:DO (3.1) BS03 ZN ? GO:0003735 ... P0CH08 29429877
    390855 5on6:DQ (3.1) BS01 rna ? GO:0002181 ... P0CX27 29429877
    390856 5on6:DQ (3.1) BS02 OHX ? GO:0002181 ... P0CX27 29429877
    390857 5on6:DQ (3.1) BS03 ZN ? GO:0002181 ... P0CX27 29429877
    390858 5on6:DR (3.1) BS01 rna ? GO:0002181 ... P0CX25 29429877
    390859 5on6:DR (3.1) BS02 rna ? GO:0002181 ... P0CX25 29429877
    390860 5on6:DR (3.1) BS03 ZN ? GO:0002181 ... P0CX25 29429877
    390861 5on6:E (3.1) BS01 rna ? GO:0000054 ... P05750 29429877
    390862 5on6:F (3.1) BS01 rna ? GO:0002181 ... P0CX35 29429877
    390863 5on6:G (3.1) BS01 rna ? GO:0000028 ... P26783 29429877
    390864 5on6:H (3.1) BS01 rna ? GO:0000462 ... P0CX37 29429877
    390865 5on6:I (3.1) BS01 rna ? GO:0002181 ... P26786 29429877
    390866 5on6:J (3.1) BS01 rna ? GO:0000462 ... P0CX39 29429877
    390867 5on6:J (3.1) BS02 rna ? GO:0000462 ... P0CX39 29429877
    390868 5on6:J (3.1) BS03 OHX ? GO:0000462 ... P0CX39 29429877
    390869 5on6:K (3.1) BS01 rna ? GO:0000462 ... O13516 29429877
    390870 5on6:L (3.1) BS01 rna ? GO:0000054 ... Q08745 29429877
    390871 5on6:M (3.1) BS01 rna ? GO:0000028 ... P0CX47 29429877
    390872 5on6:M (3.1) BS02 OHX ? GO:0000028 ... P0CX47 29429877
    390873 5on6:N (3.1) BS01 rna ? GO:0003735 ... P48589 29429877
    390874 5on6:O (3.1) BS01 rna ? GO:0000462 ... P05756 29429877
    390875 5on6:O (3.1) BS02 rna ? GO:0000462 ... P05756 29429877
    390876 5on6:O (3.1) BS03 OHX ? GO:0000462 ... P05756 29429877
    390877 5on6:P (3.1) BS01 rna ? GO:0000028 ... P39516 29429877
    390878 5on6:Q (3.1) BS01 rna ? GO:0000028 ... Q01855 29429877
    390879 5on6:Q (3.1) BS02 rna ? GO:0000028 ... Q01855 29429877
    390880 5on6:Q (3.1) BS03 OHX ? GO:0000028 ... Q01855 29429877
    390881 5on6:R (3.1) BS01 rna ? GO:0000462 ... P0CX51 29429877
    390882 5on6:S (3.1) BS01 rna ? GO:0000028 ... P14127 29429877
    390883 5on6:T (3.1) BS01 rna ? GO:0000054 ... P0CX55 29429877
    390884 5on6:T (3.1) BS02 MG ? GO:0000054 ... P0CX55 29429877
    390885 5on6:U (3.1) BS01 rna ? GO:0000028 ... P07280 29429877
    390886 5on6:V (3.1) BS01 rna ? GO:0000462 ... P38701 29429877
    390887 5on6:X (3.1) BS01 rna ? GO:0002181 ... P0C0W1 29429877
    390888 5on6:Y (3.1) BS01 rna ? GO:0000462 ... P0CX29 29429877
    390889 5on6:Z (3.1) BS01 rna ? GO:0000462 ... P0CX31 29429877
    390890 5on6:a (3.1) BS01 rna ? N/A Q3E792 29429877
    390891 5on6:b (3.1) BS01 rna ? GO:0003735 ... P39939 29429877
    390892 5on6:b (3.1) BS02 ZN ? GO:0003735 ... P39939 29429877
    390893 5on6:c (3.1) BS01 rna ? GO:0000028 ... P35997 29429877
    390894 5on6:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 29429877
    390895 5on6:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 29429877
    390896 5on6:c1 (3.1) BS02 OHX ? GO:0000028 ... P0CX47 29429877
    390897 5on6:c2 (3.1) BS01 rna ? GO:0003735 ... P48589 29429877
    390898 5on6:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 29429877
    390899 5on6:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 29429877
    390900 5on6:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 29429877
    390901 5on6:c3 (3.1) BS04 OHX ? GO:0000462 ... P05756 29429877
    390902 5on6:c4 (3.1) BS01 rna ? GO:0000028 ... P39516 29429877
    390903 5on6:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 29429877
    390904 5on6:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 29429877
    390905 5on6:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 29429877
    390906 5on6:c7 (3.1) BS01 rna ? GO:0000028 ... P14127 29429877
    390907 5on6:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 29429877
    390908 5on6:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 29429877
    390909 5on6:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 29429877
    390910 5on6:d (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 29429877
    390911 5on6:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 29429877
    390912 5on6:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 29429877
    390913 5on6:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 29429877
    390914 5on6:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 29429877
    390915 5on6:d4 (3.1) BS02 OHX ? GO:0000462 ... P0CX31 29429877
    390916 5on6:d5 (3.1) BS01 rna ? N/A Q3E792 29429877
    390917 5on6:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 29429877
    390918 5on6:d6 (3.1) BS02 MG ? GO:0003735 ... P39939 29429877
    390919 5on6:d6 (3.1) BS03 ZN ? GO:0003735 ... P39939 29429877
    390920 5on6:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 29429877
    390921 5on6:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 29429877
    390922 5on6:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 29429877
    390923 5on6:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 29429877
    390924 5on6:d9 (3.1) BS02 OHX ? GO:0002181 ... P41057 29429877
    390925 5on6:d9 (3.1) BS03 ZN ? GO:0002181 ... P41057 29429877
    390926 5on6:e (3.1) BS01 rna ? GO:0002181 ... P41057 29429877
    390927 5on6:e (3.1) BS02 OHX ? GO:0002181 ... P41057 29429877
    390928 5on6:e (3.1) BS03 ZN ? GO:0002181 ... P41057 29429877
    390929 5on6:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 29429877
    390930 5on6:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 29429877
    390931 5on6:e1 (3.1) BS02 ZN ? GO:0003735 ... P05759 29429877
    390932 5on6:f (3.1) BS01 rna ? GO:0002181 ... P0CX33 29429877
    390933 5on6:g (3.1) BS01 rna ? GO:0003735 ... P05759 29429877
    390934 5on6:g (3.1) BS02 ZN ? GO:0003735 ... P05759 29429877
    390935 5on6:h (3.1) BS01 rna ? GO:0001965 ... P38011 29429877
    390936 5on6:h (3.1) BS02 OHX ? GO:0001965 ... P38011 29429877
    390937 5on6:i (3.1) BS01 rna ? GO:0000723 ... P39015 29429877
    390938 5on6:i (3.1) BS02 rna ? GO:0000723 ... P39015 29429877
    390939 5on6:i (3.1) BS03 MG ? GO:0000723 ... P39015 29429877
    390940 5on6:j (3.1) BS01 rna ? GO:0002181 ... P0CX45 29429877
    390941 5on6:j (3.1) BS02 rna ? GO:0002181 ... P0CX45 29429877
    390942 5on6:j (3.1) BS03 MG ? GO:0002181 ... P0CX45 29429877
    390943 5on6:k (3.1) BS01 rna ? GO:0000027 ... P14126 29429877
    390944 5on6:k (3.1) BS02 OHX ? GO:0000027 ... P14126 29429877
    390945 5on6:k (3.1) BS03 OHX ? GO:0000027 ... P14126 29429877
    390946 5on6:k (3.1) BS04 MG ? GO:0000027 ... P14126 29429877
    390947 5on6:l (3.1) BS01 rna ? GO:0002181 ... P10664 29429877
    390948 5on6:l (3.1) BS02 rna ? GO:0002181 ... P10664 29429877
    390949 5on6:l (3.1) BS03 OHX ? GO:0002181 ... P10664 29429877
    390950 5on6:l (3.1) BS04 MG ? GO:0002181 ... P10664 29429877
    390951 5on6:lR (3.1) BS01 rna ? GO:0002181 ... P0CX41 29429877
    390952 5on6:lR (3.1) BS02 rna ? GO:0002181 ... P0CX41 29429877
    390953 5on6:m (3.1) BS01 rna ? GO:0000027 ... P26321 29429877
    390954 5on6:m (3.1) BS02 rna ? GO:0000027 ... P26321 29429877
    390955 5on6:m2 (3.1) BS01 rna N/A N/A N/A 29429877
    390956 5on6:n (3.1) BS01 rna ? GO:0000027 ... Q02326 29429877
    390957 5on6:n (3.1) BS02 MG ? GO:0000027 ... Q02326 29429877
    390958 5on6:o (3.1) BS01 rna ? GO:0000463 ... P05737 29429877
    390959 5on6:o (3.1) BS02 rna ? GO:0000463 ... P05737 29429877
    390960 5on6:o (3.1) BS03 OHX ? GO:0000463 ... P05737 29429877
    390961 5on6:p (3.1) BS01 rna ? GO:0000470 ... P17076 29429877
    390962 5on6:p (3.1) BS02 rna ? GO:0000470 ... P17076 29429877
    390963 5on6:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 29429877
    390964 5on6:q (3.1) BS01 rna ? GO:0002181 ... P05738 29429877
    390965 5on6:r (3.1) BS01 rna ? GO:0000027 ... P41805 29429877
    390966 5on6:r (3.1) BS02 rna ? GO:0000027 ... P41805 29429877
    390967 5on6:r (3.1) BS03 OHX ? GO:0000027 ... P41805 29429877
    390968 5on6:r (3.1) BS04 MG ? GO:0000027 ... P41805 29429877
    390969 5on6:s (3.1) BS01 rna ? GO:0000027 ... Q3E757 29429877
    390970 5on6:s (3.1) BS02 rna ? GO:0000027 ... Q3E757 29429877
    390971 5on6:s0 (3.1) BS01 rna ? GO:0003735 ... P32905 29429877
    390972 5on6:s1 (3.1) BS01 rna ? GO:0003735 ... P33442 29429877
    390973 5on6:s1 (3.1) BS02 rna ? GO:0003735 ... P33442 29429877
    390974 5on6:s1 (3.1) BS03 OHX ? GO:0003735 ... P33442 29429877
    390975 5on6:s2 (3.1) BS01 rna ? GO:0003723 ... P25443 29429877
    390976 5on6:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 29429877
    390977 5on6:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 29429877
    390978 5on6:s4 (3.1) BS02 MG ? GO:0002181 ... P0CX35 29429877
    390979 5on6:s5 (3.1) BS01 rna ? GO:0000028 ... P26783 29429877
    390980 5on6:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 29429877
    390981 5on6:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 29429877
    390982 5on6:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 29429877
    390983 5on6:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 29429877
    390984 5on6:s8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 29429877
    390985 5on6:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 29429877
    390986 5on6:sM (3.1) BS01 rna ? N/A P39015 29429877
    390987 5on6:sM (3.1) BS02 rna ? N/A P39015 29429877
    390988 5on6:sM (3.1) BS03 MG ? N/A P39015 29429877
    390989 5on6:sR (3.1) BS01 rna ? GO:0001965 ... P38011 29429877
    390990 5on6:t (3.1) BS01 rna ? GO:0002181 ... Q12690 29429877
    390991 5on6:t (3.1) BS02 rna ? GO:0002181 ... Q12690 29429877
    390992 5on6:u (3.1) BS01 rna ? GO:0000027 ... P36105 29429877
    390993 5on6:v (3.1) BS01 rna ? GO:0002181 ... P05748 29429877
    390994 5on6:v (3.1) BS02 rna ? GO:0002181 ... P05748 29429877
    390995 5on6:v (3.1) BS03 OHX ? GO:0002181 ... P05748 29429877
    390996 5on6:w (3.1) BS01 rna ? GO:0000470 ... P26784 29429877
    390997 5on6:x (3.1) BS01 rna ? GO:0000448 ... P05740 29429877
    390998 5on6:x (3.1) BS02 rna ? GO:0000448 ... P05740 29429877
    390999 5on6:x (3.1) BS03 OHX ? GO:0000448 ... P05740 29429877
    391000 5on6:x (3.1) BS04 MG ? GO:0000448 ... P05740 29429877

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).