SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    391401 5opx:M (3.64) BS02 BEF 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    391402 5opx:N (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    391403 5opx:N (3.64) BS02 BEF 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    391404 5opz:A (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    391405 5opz:B (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    391406 5oq1:A (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    391407 5oq1:B (1.34) BS01 ZN N/A GO:0008233 ... N/A 29229757
    391408 5oq4:A (2.7) BS01 A3W 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 28829592 BindingDB: Kd=25nM, IC50=708nM
    391409 5oq5:A (1.4) BS01 4K4 2.7.11.1 GO:0000077 ... O14757 29023112 MOAD: Ki=0.02uM
    391410 5oq6:A (1.95) BS01 4K4 2.7.11.1 GO:0000077 ... O14757 29023112 MOAD: Ki=0.0277uM
    391411 5oq7:A (2.1) BS01 A0Q 2.7.11.1 GO:0000077 ... O14757 29023112 MOAD: Ki=0.322uM
    391412 5oq7:B (2.1) BS01 A0Q 2.7.11.1 GO:0000077 ... O14757 29023112 MOAD: Ki=0.322uM
    391413 5oq8:A (2.0) BS01 A0Q 2.7.11.1 GO:0000077 ... O14757 29023112 MOAD: Ki=1.41uM
    391414 5oqd:A (2.447) BS01 ZN ? N/A Q24459 29058710
    391415 5oqd:A (2.447) BS02 ZN ? N/A Q24459 29058710
    391416 5oqd:B (2.447) BS01 ZN ? N/A Q24459 29058710
    391417 5oqd:B (2.447) BS02 ZN ? N/A Q24459 29058710
    391418 5oqd:C (2.447) BS01 ZN ? N/A Q24459 29058710
    391419 5oqd:C (2.447) BS02 ZN ? N/A Q24459 29058710
    391420 5oqd:D (2.447) BS01 ZN ? N/A Q24459 29058710
    391421 5oqd:D (2.447) BS02 ZN ? N/A Q24459 29058710
    391422 5oqd:E (2.447) BS01 ZN ? N/A Q24459 29058710
    391423 5oqd:E (2.447) BS02 ZN ? N/A Q24459 29058710
    391424 5oqd:F (2.447) BS01 ZN ? N/A Q24459 29058710
    391425 5oqd:F (2.447) BS02 ZN ? N/A Q24459 29058710
    391426 5oqj:0 (4.7) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 29088706
    391427 5oqj:3 (4.7) BS01 ZN ? GO:0000993 ... Q03290 29088706
    391428 5oqj:3 (4.7) BS02 ZN ? GO:0000993 ... Q03290 29088706
    391429 5oqj:4 (4.7) BS01 ZN ? GO:0000112 ... Q12004 29088706
    391430 5oqj:6 (4.7) BS01 ZN ? GO:0000112 ... Q04673 29088706
    391431 5oqj:6 (4.7) BS02 ZN ? GO:0000112 ... Q04673 29088706
    391432 5oqj:7 (4.7) BS01 dna 5.6.2.4 GO:0000019 ... Q00578 29088706
    391433 5oqj:7 (4.7) BS02 dna 5.6.2.4 GO:0000019 ... Q00578 29088706
    391434 5oqj:A (4.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 29088706
    391435 5oqj:A (4.7) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    391436 5oqj:A (4.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    391437 5oqj:A (4.7) BS04 MG 2.7.7.6 GO:0000428 ... P04050 29088706
    391438 5oqj:B (4.7) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 29088706
    391439 5oqj:C (4.7) BS01 ZN ? GO:0000428 ... P16370 29088706
    391440 5oqj:I (4.7) BS01 ZN ? GO:0000428 ... P27999 29088706
    391441 5oqj:I (4.7) BS02 ZN ? GO:0000428 ... P27999 29088706
    391442 5oqj:J (4.7) BS01 ZN ? GO:0000428 ... P22139 29088706
    391443 5oqj:M (4.7) BS01 ZN ? GO:0000993 ... P29055 29088706
    391444 5oqj:O (4.7) BS01 dna ? GO:0000126 ... P13393 29088706
    391445 5oqj:O (4.7) BS02 dna ? GO:0000126 ... P13393 29088706
    391446 5oqj:W (4.7) BS01 ZN ? GO:0006367 ... P36100 29088706
    391447 5oql:0 (3.2) BS01 rna ? GO:0000462 ... G0S5F1 28967883
    391448 5oql:A (3.2) BS01 rna ? GO:0000028 ... G0SF93 28967883
    391449 5oql:A (3.2) BS02 rna ? GO:0000028 ... G0SF93 28967883
    391450 5oql:B (3.2) BS01 rna ? GO:0005634 ... G0SDW0 28967883
    391451 5oql:B (3.2) BS02 rna ? GO:0005634 ... G0SDW0 28967883
    391452 5oql:C (3.2) BS01 rna ? GO:0000462 ... G0S4H3 28967883
    391453 5oql:D (3.2) BS01 rna ? GO:0000462 ... G0SCT7 28967883
    391454 5oql:E (3.2) BS01 rna ? GO:0000462 ... G0S387 28967883
    391455 5oql:E (3.2) BS02 rna ? GO:0000462 ... G0S387 28967883
    391456 5oql:F (3.2) BS01 rna ? GO:0000462 ... G0RZ99 28967883
    391457 5oql:F (3.2) BS02 rna ? GO:0000462 ... G0RZ99 28967883
    391458 5oql:G (3.2) BS01 rna ? GO:0000462 ... G0S5L1 28967883
    391459 5oql:G (3.2) BS02 rna ? GO:0000462 ... G0S5L1 28967883
    391460 5oql:H (3.2) BS01 rna ? GO:0005634 ... G0SF32 28967883
    391461 5oql:H (3.2) BS02 rna ? GO:0005634 ... G0SF32 28967883
    391462 5oql:J (3.2) BS01 rna ? GO:0000472 ... G0SG95 28967883
    391463 5oql:K (3.2) BS01 rna ? GO:0005634 ... G0S8Y4 28967883
    391464 5oql:M (3.2) BS01 rna ? GO:0003723 ... G0SCS8 28967883
    391465 5oql:M (3.2) BS02 rna ? GO:0003723 ... G0SCS8 28967883
    391466 5oql:N (3.2) BS01 rna ? GO:0005730 ... G0SBN9 28967883
    391467 5oql:N (3.2) BS02 rna ? GO:0005730 ... G0SBN9 28967883
    391468 5oql:O (3.2) BS01 rna ? GO:0006364 ... G0S872 28967883
    391469 5oql:O (3.2) BS02 rna ? GO:0006364 ... G0S872 28967883
    391470 5oql:P (3.2) BS01 rna ? GO:0004540 ... G0SE30 28967883
    391471 5oql:P (3.2) BS02 rna ? GO:0004540 ... G0SE30 28967883
    391472 5oql:P (3.2) BS03 ZN ? GO:0004540 ... G0SE30 28967883
    391473 5oql:Q (3.2) BS01 rna ? N/A G0S7X0 28967883
    391474 5oql:S (3.2) BS01 rna ? GO:0000494 ... G0SGY2 28967883
    391475 5oql:T (3.2) BS01 rna ? GO:0030515 ... G0S2U4 28967883
    391476 5oql:T (3.2) BS02 rna ? GO:0030515 ... G0S2U4 28967883
    391477 5oql:U (3.2) BS01 rna ? GO:0005634 ... G0RYF6 28967883
    391478 5oql:U (3.2) BS02 rna ? GO:0005634 ... G0RYF6 28967883
    391479 5oql:V (3.2) BS01 rna ? GO:0000398 ... G0SGM0 28967883
    391480 5oql:V (3.2) BS02 rna ? GO:0000398 ... G0SGM0 28967883
    391481 5oql:W (3.2) BS01 rna ? GO:0000398 ... G0SGM0 28967883
    391482 5oql:X (3.2) BS01 rna ? GO:0005634 ... G0SG51 28967883
    391483 5oql:Z (3.2) BS01 rna ? GO:0000462 ... G0S445 28967883
    391484 5oql:Z (3.2) BS02 rna ? GO:0000462 ... G0S445 28967883
    391485 5oql:a (3.2) BS01 rna ? GO:0003723 ... G0SDL4 28967883
    391486 5oql:a (3.2) BS02 rna ? GO:0003723 ... G0SDL4 28967883
    391487 5oql:b (3.2) BS01 rna ? GO:0005730 ... G0SE90 28967883
    391488 5oql:c (3.2) BS01 rna ? GO:0005634 ... G0S9I7 28967883
    391489 5oql:d (3.2) BS01 rna ? GO:0000462 ... G0RY94 28967883
    391490 5oql:d (3.2) BS02 rna ? GO:0000462 ... G0RY94 28967883
    391491 5oql:e (3.2) BS01 rna ? GO:0005634 ... G0SAY9 28967883
    391492 5oql:g (3.2) BS01 rna ? GO:0003676 ... G0S3V7 28967883
    391493 5oql:k (3.2) BS01 rna ? GO:0003723 ... G0S4E3 28967883
    391494 5oql:k (3.2) BS02 rna ? GO:0003723 ... G0S4E3 28967883
    391495 5oql:l (3.2) BS01 rna ? GO:0003735 ... G0S7T8 28967883
    391496 5oql:m (3.2) BS01 rna ? GO:0003723 ... G0S1A6 28967883
    391497 5oql:n (3.2) BS01 rna ? GO:0003723 ... G0S1Z0 28967883
    391498 5oql:o (3.2) BS01 rna ? GO:0003735 ... G0RY43 28967883
    391499 5oql:q (3.2) BS01 rna ? GO:0003735 ... G0RY45 28967883
    391500 5oql:r (3.2) BS01 rna ? GO:0003723 ... G0S0Z4 28967883
    391501 5oql:s (3.2) BS01 rna ? GO:0003735 ... G0RZM9 28967883
    391502 5oql:t (3.2) BS01 rna ? GO:0003735 ... G0SFL1 28967883
    391503 5oql:u (3.2) BS01 rna ? GO:0000462 ... G0SBR7 28967883
    391504 5oql:v (3.2) BS01 rna ? GO:0003735 ... G0SF00 28967883
    391505 5oql:w (3.2) BS01 rna ? GO:0003735 ... G0SHI0 28967883
    391506 5oql:x (3.2) BS01 rna ? GO:0003735 ... G0RY17 28967883
    391507 5oql:y (3.2) BS01 rna ? GO:0003735 ... P0CU28 28967883
    391508 5oql:z (3.2) BS01 rna ? GO:0000028 ... G0S9M9 28967883
    391509 5oqm:0 (5.8) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 29088706
    391510 5oqm:3 (5.8) BS01 ZN ? GO:0000993 ... Q03290 29088706
    391511 5oqm:3 (5.8) BS02 ZN ? GO:0000993 ... Q03290 29088706
    391512 5oqm:4 (5.8) BS01 ZN ? GO:0000112 ... Q12004 29088706
    391513 5oqm:6 (5.8) BS01 ZN ? GO:0000112 ... Q04673 29088706
    391514 5oqm:6 (5.8) BS02 ZN ? GO:0000112 ... Q04673 29088706
    391515 5oqm:7 (5.8) BS01 dna 5.6.2.4 GO:0000019 ... Q00578 29088706
    391516 5oqm:7 (5.8) BS02 dna 5.6.2.4 GO:0000019 ... Q00578 29088706
    391517 5oqm:A (5.8) BS01 dna 2.7.7.6 GO:0000428 ... P04050 29088706
    391518 5oqm:A (5.8) BS02 dna 2.7.7.6 GO:0000428 ... P04050 29088706
    391519 5oqm:A (5.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    391520 5oqm:A (5.8) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29088706
    391521 5oqm:A (5.8) BS05 MG 2.7.7.6 GO:0000428 ... P04050 29088706
    391522 5oqm:B (5.8) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 29088706
    391523 5oqm:C (5.8) BS01 ZN ? GO:0000428 ... P16370 29088706
    391524 5oqm:E (5.8) BS01 dna ? GO:0000428 ... P20434 29088706
    391525 5oqm:I (5.8) BS01 ZN ? GO:0000428 ... P27999 29088706
    391526 5oqm:I (5.8) BS02 ZN ? GO:0000428 ... P27999 29088706
    391527 5oqm:J (5.8) BS01 ZN ? GO:0000428 ... P22139 29088706
    391528 5oqm:M (5.8) BS01 ZN ? GO:0000993 ... P29055 29088706
    391529 5oqm:O (5.8) BS01 dna ? GO:0000126 ... P13393 29088706
    391530 5oqm:O (5.8) BS02 dna ? GO:0000126 ... P13393 29088706
    391531 5oqm:W (5.8) BS01 ZN ? GO:0006367 ... P36100 29088706
    391532 5oqn:A (3.15) BS01 dna ? GO:0000796 ... Q06680 28988770
    391533 5oqn:A (3.15) BS02 dna ? GO:0000796 ... Q06680 28988770
    391534 5oqo:A (3.25) BS01 dna ? GO:0000796 ... Q06680 28988770
    391535 5oqo:A (3.25) BS02 dna ? GO:0000796 ... Q06680 28988770
    391536 5oqp:A (2.98) BS01 dna ? GO:0000796 ... Q06680 28988770
    391537 5oqp:A (2.98) BS02 dna ? GO:0000796 ... Q06680 28988770
    391538 5oqt:A (2.86) BS01 peptide ? GO:0003333 ... Q5L1G5 29416041
    391539 5oqt:A (2.86) BS02 ALA ? GO:0003333 ... Q5L1G5 29416041
    391540 5oqu:A (2.324) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    391541 5oqu:A (2.324) BS02 A4B 2.7.11.1 GO:0004672 ... P68400 29732088 BindingDB: IC50=493000nM
    391542 5oqu:A (2.324) BS03 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    391543 5oqu:A (2.324) BS04 IHP 2.7.11.1 GO:0004672 ... P68400 29732088
    391544 5oqu:B (2.324) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    391545 5oqw:A (2.31) BS01 ZN 2.3.2.27 N/A P98170 29695633
    391546 5oqw:A (2.31) BS02 A4E 2.3.2.27 N/A P98170 29695633 MOAD: ic50<40nM
    391547 5oqw:B (2.31) BS01 ZN 2.3.2.27 N/A P98170 29695633
    391548 5oqw:B (2.31) BS02 A4E 2.3.2.27 N/A P98170 29695633 MOAD: ic50<40nM
    391549 5or2:A (2.5) BS01 A4H ? GO:0004864 ... O49686 N/A
    391550 5or2:B (2.5) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    391551 5or2:B (2.5) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    391552 5or2:B (2.5) BS03 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    391553 5or3:A (1.795) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391554 5or3:A (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391555 5or3:A (1.795) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    391556 5or3:B (1.795) BS01 MAN ? GO:0004097 ... Q2UNF9 29715329
    391557 5or3:B (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391558 5or3:B (1.795) BS03 CU ? GO:0004097 ... Q2UNF9 29715329
    391559 5or3:B (1.795) BS04 MAN ? GO:0004097 ... Q2UNF9 29715329
    391560 5or3:C (1.795) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391561 5or3:C (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391562 5or3:D (1.795) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391563 5or3:D (1.795) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391564 5or3:D (1.795) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    391565 5or4:A (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391566 5or4:A (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391567 5or4:B (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391568 5or4:B (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391569 5or4:B (2.445) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    391570 5or4:C (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391571 5or4:C (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391572 5or4:D (2.445) BS01 CU ? GO:0004097 ... Q2UNF9 29715329
    391573 5or4:D (2.445) BS02 CU ? GO:0004097 ... Q2UNF9 29715329
    391574 5or4:D (2.445) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    391575 5or5:A (-1.00) BS01 dna ? GO:0003677 ... P0AGB6
    Q45585
    N/A
    391576 5or6:A (2.4) BS01 A4K ? GO:0004864 ... O49686 N/A
    391577 5or6:B (2.4) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    391578 5or6:B (2.4) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    391579 5or6:B (2.4) BS03 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 N/A
    391580 5or8:A (2.4) BS01 JR4 ? N/A Q9UIF9 28862840
    391581 5or9:A (2.0) BS01 JR5 ? N/A Q9UIF8 28862840 MOAD: ic50=88uM
    391582 5orb:A (2.103) BS01 JR6 ? N/A Q9UIF8 28862840
    391583 5orf:A (2.54) BS01 PRO ? GO:0005576 ... P14639 29095162
    391584 5orf:A (2.54) BS02 PRO ? GO:0005576 ... P14639 29095162
    391585 5orf:B (2.54) BS01 PRO ? GO:0005576 ... P14639 29095162
    391586 5orf:C (2.54) BS01 PRO ? GO:0005576 ... P14639 29095162
    391587 5orf:C (2.54) BS02 PRO ? GO:0005576 ... P14639 29095162
    391588 5orf:D (2.54) BS01 PRO ? GO:0005576 ... P14639 29095162
    391589 5orf:D (2.54) BS02 PRO ? GO:0005576 ... P14639 29095162
    391590 5org:A (1.99) BS01 6DB ? GO:0015276 ... P0A4F8 29269740 MOAD: Kd=0.009uM
    391591 5org:B (1.99) BS01 6DB ? GO:0015276 ... P0A4F8 29269740 MOAD: Kd=0.009uM
    391592 5orh:A (1.75) BS01 A4N 2.7.11.1 GO:0004672 ... P68400 29732088 MOAD: Kd=41uM
    BindingDB: IC50=208000nM
    391593 5orh:A (1.75) BS02 A4N 2.7.11.1 GO:0004672 ... P68400 29732088 MOAD: Kd=41uM
    BindingDB: IC50=208000nM
    391594 5orh:B (1.75) BS01 A4N 2.7.11.1 GO:0004672 ... P68400 29732088 MOAD: Kd=41uM
    BindingDB: IC50=208000nM
    391595 5orh:B (1.75) BS02 A4N 2.7.11.1 GO:0004672 ... P68400 29732088 MOAD: Kd=41uM
    BindingDB: IC50=208000nM
    391596 5orj:A (1.99) BS01 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    391597 5orj:A (1.99) BS02 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    391598 5orj:A (1.99) BS03 MG 2.7.11.1 GO:0004672 ... P68400 29732088
    391599 5orj:A (1.99) BS04 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    391600 5orj:A (1.99) BS05 A4Q 2.7.11.1 GO:0004672 ... P68400 29732088 BindingDB: IC50=160000nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).