SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 1b09:A (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    3802 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    3803 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    3804 1b09:B (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    3805 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    3806 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    3807 1b09:C (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    3808 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    3809 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    3810 1b09:D (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    3811 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    3812 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    3813 1b09:E (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    3814 1b0b:A (1.43) BS01 CYN ? GO:0005576 ... P41260 10423453
    3815 1b0b:A (1.43) BS02 HEM ? GO:0005576 ... P41260 10423453
    3816 1b0d:A (1.84) BS01 TSU 3.2.1.17 GO:0003796 ... P00698 11418760
    3817 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    3818 1b0e:A (1.8) BS02 SEI 3.4.21.36 GO:0004252 ... P00772 9651152
    3819 1b0f:A (3.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 9651152
    3820 1b0f:A (3.0) BS02 SEI 3.4.21.37 GO:0000122 ... P08246 9651152 BindingDB: Ki=25nM
    3821 1b0g:A (2.5) BS01 peptide ? N/A P04439 9892618
    3822 1b0g:D (2.5) BS01 peptide ? N/A P04439 9892618
    3823 1b0h:A (1.9) BS01 peptide ? GO:0015833 ... P06202 10422831
    3824 1b0i:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9862804
    3825 1b0j:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    3826 1b0k:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    3827 1b0k:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    3828 1b0k:A (2.5) BS03 O 4.2.1.3 GO:0003994 ... P16276 10631981
    3829 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001530 ... P02788 10089347
    3830 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001530 ... P02788 10089347
    3831 1b0l:A (2.2) BS03 CO3 3.4.21.- GO:0001530 ... P02788 10089347
    3832 1b0l:A (2.2) BS04 CO3 3.4.21.- GO:0001530 ... P02788 10089347
    3833 1b0m:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    3834 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    3835 1b0n:A (1.9) BS01 ZN ? GO:0003677 ... P06533 9799632
    3836 1b0n:A (1.9) BS02 ZN ? GO:0003677 ... P06533 9799632
    3837 1b0n:A (1.9) BS03 ZN ? GO:0003677 ... P06533 9799632
    3838 1b0n:B (1.9) BS01 ZN ? GO:0006355 ... P23308 9799632
    3839 1b0o:A (2.5) BS01 PLM ? GO:0005515 ... P02754 9867826
    3840 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    3841 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    3842 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    3843 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    3844 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    3845 1b0p:A (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    3846 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    3847 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    3848 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    3849 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    3850 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    3851 1b0p:B (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    3852 1b0r:A (2.9) BS01 peptide ? N/A P04439 9741848
    3853 1b0t:A (2.1) BS01 SF4 ? GO:0009055 ... P00214 N/A
    3854 1b0t:A (2.1) BS02 F3S ? GO:0009055 ... P00214 N/A
    3855 1b0u:A (1.5) BS01 ATP 7.4.2.1 GO:0003333 ... P02915 9872322
    3856 1b0v:A (2.8) BS01 SF4 ? GO:0009055 ... P00214 10593945
    3857 1b0v:A (2.8) BS02 F3S ? GO:0009055 ... P00214 10593945
    3858 1b0v:B (2.8) BS01 SF4 ? GO:0009055 ... P00214 10593945
    3859 1b0v:B (2.8) BS02 F3S ? GO:0009055 ... P00214 10593945
    3860 1b0v:C (2.8) BS01 SF4 ? GO:0009055 ... P00214 10593945
    3861 1b0v:C (2.8) BS02 F3S ? GO:0009055 ... P00214 10593945
    3862 1b0v:D (2.8) BS01 SF4 ? GO:0009055 ... P00214 10593945
    3863 1b0v:D (2.8) BS02 F3S ? GO:0009055 ... P00214 10593945
    3864 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    3865 1b11:A (1.9) BS01 3TL 2.7.7.-
    2.7.7.49
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.-
    3.6.1.23
    GO:0004190 ... P16088 10651036 MOAD: Ki=41nM
    3866 1b12:A (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    3867 1b12:B (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    3868 1b12:C (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    3869 1b12:D (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    3870 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    3871 1b14:A (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    3872 1b14:B (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    3873 1b15:A (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    3874 1b15:B (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    3875 1b16:A (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    3876 1b16:B (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    3877 1b17:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    3878 1b18:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    3879 1b19:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    3880 1b1b:A (2.6) BS01 ZN ? GO:0003677 ... P9WMH1 9887269
    3881 1b1b:A (2.6) BS02 ZN ? GO:0003677 ... P9WMH1 9887269
    3882 1b1c:A (1.93) BS01 FMN 1.6.2.4 GO:0010181 ... P16435 10048323
    3883 1b1g:A (-1.00) BS01 CA ? GO:0005509 ... P02633 9390401
    3884 1b1g:A (-1.00) BS02 CA ? GO:0005509 ... P02633 9390401
    3885 1b1h:A (1.8) BS01 peptide ? GO:0015833 ... P06202 10422831
    3886 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001817 ... O77811 10366507
    3887 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001817 ... O77811 10366507
    3888 1b1x:A (2.62) BS03 CO3 3.4.21.- GO:0001817 ... O77811 10366507
    3889 1b1x:A (2.62) BS04 CO3 3.4.21.- GO:0001817 ... O77811 10366507
    3890 1b1y:A (2.5) BS01 BGC 3.2.1.2 GO:0000272 ... P16098 9918723
    3891 1b1y:A (2.5) BS02 GLC 3.2.1.2 GO:0000272 ... P16098 9918723
    3892 1b23:P (2.6) BS01 rna ? GO:0000287 ... Q01698 10368282
    3893 1b23:P (2.6) BS02 CYS ? GO:0000287 ... Q01698 10368282
    3894 1b23:P (2.6) BS03 MG ? GO:0000287 ... Q01698 10368282
    3895 1b23:P (2.6) BS04 GNP ? GO:0000287 ... Q01698 10368282
    3896 1b25:A (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3897 1b25:A (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3898 1b25:B (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3899 1b25:B (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3900 1b25:C (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3901 1b25:C (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3902 1b25:D (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3903 1b25:D (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3904 1b2a:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    3905 1b2b:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    3906 1b2c:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    3907 1b2d:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    3908 1b2e:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    3909 1b2f:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    3910 1b2g:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    3911 1b2h:A (1.9) BS01 peptide ? GO:0015833 ... P06202 10422831
    3912 1b2i:A (-1.00) BS01 AMH 3.4.21.7 N/A P00747 10625440 BindingDB: Kd=1100nM, IC50=3100nM, Ki=25000000nM
    3913 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    3914 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    3915 1b2l:A (1.6) BS02 NDC 1.1.1.1 GO:0004022 ... P10807 10366509
    3916 1b2l:A (1.6) BS03 CYH 1.1.1.1 GO:0004022 ... P10807 10366509
    3917 1b2m:A (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    3918 1b2m:B (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    3919 1b2m:B (2.0) BS02 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    3920 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    3921 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    3922 1b2r:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 10651039
    3923 1b2v:A (1.9) BS01 HEM ? GO:0005515 ... Q54450 10360351
    3924 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    3925 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    3926 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    3927 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    3928 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    3929 1b2z:C (2.03) BS01 ZN 3.1.27.- GO:0003723 ... P00648 11914482
    3930 1b30:A (2.25) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3931 1b30:A (2.25) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3932 1b32:A (1.75) BS01 peptide ? GO:0015833 ... P06202 10438628
    3933 1b33:A (2.3) BS01 BLA ? GO:0015979 ... P00315 9990029
    3934 1b33:B (2.3) BS01 BLA ? GO:0015979 ... P00318 9990029
    3935 1b33:F (2.3) BS01 BLA ? GO:0015979 ... P00318 9990029
    3936 1b33:N (2.3) BS01 BLA ? GO:0015979 ... P20116 9990029
    3937 1b37:A (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    3938 1b37:B (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    3939 1b37:C (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    3940 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    3941 1b38:A (2.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.254uM
    3942 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    3943 1b39:A (2.1) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.12uM
    3944 1b3a:A (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    3945 1b3a:B (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    3946 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    3947 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    3948 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    3949 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    3950 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    3951 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    3952 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    3953 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    3954 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    3955 1b3d:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    3956 1b3d:B (2.3) BS06 S27 3.4.24.17 GO:0004222 ... P08254 10543949 BindingDB: IC50=24nM
    3957 1b3e:A (2.5) BS01 FE ? GO:0005576 ... P02787 10029548
    3958 1b3e:A (2.5) BS02 CO3 ? GO:0005576 ... P02787 10029548
    3959 1b3f:A (1.8) BS01 peptide ? GO:0015833 ... P06202 10438628
    3960 1b3g:A (2.0) BS01 peptide ? GO:0015833 ... P06202 10438628
    3961 1b3h:A (2.0) BS01 peptide ? GO:0015833 ... P06202 10422831
    3962 1b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    3963 1b3l:A (2.0) BS01 peptide ? GO:0015833 ... P06202 10438628
    3964 1b3l:C (2.0) BS01 peptide ? GO:0015833 ... P06202 10438628
    3965 1b3n:A (2.65) BS01 CER 2.3.1.179 GO:0004315 ... P0AAI5 10037680
    3966 1b3o:A (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    3967 1b3o:A (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    3968 1b3o:B (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    3969 1b3o:B (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    3970 1b3r:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3971 1b3r:A (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3972 1b3r:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3973 1b3r:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3974 1b3r:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3975 1b3r:C (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3976 1b3r:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3977 1b3r:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    3978 1b3t:A (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    3979 1b3t:A (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    3980 1b3t:B (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    3981 1b3t:B (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    3982 1b3v:A (2.4) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3983 1b3v:A (2.4) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3984 1b3v:A (2.4) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    3985 1b3v:A (2.4) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3986 1b3w:A (2.6) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3987 1b3w:A (2.6) BS02 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    3988 1b3w:A (2.6) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3989 1b3x:A (2.2) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3990 1b3x:A (2.2) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3991 1b3x:A (2.2) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3992 1b3y:A (2.45) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3993 1b3y:A (2.45) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3994 1b3y:A (2.45) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    3995 1b3z:A (2.3) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3996 1b3z:A (2.3) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3997 1b3z:A (2.3) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3998 1b3z:A (2.3) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    3999 1b40:A (2.2) BS01 peptide ? GO:0015833 ... P06202 10438628
    4000 1b42:A (2.2) BS01 SAH 2.1.1.57 GO:0003746 ... P07617 10377383

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).