SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    402401 5sww:A (3.151) BS01 dna 3.5.4.38 GO:0000932 ... P31941 27991903
    402402 5sww:A (3.151) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 27991903
    402403 5sww:B (3.151) BS01 dna 3.5.4.38 GO:0000932 ... P31941 27991903
    402404 5sww:B (3.151) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 27991903
    402405 5sww:C (3.151) BS01 dna 3.5.4.38 GO:0000932 ... P31941 27991903
    402406 5sww:C (3.151) BS02 dna 3.5.4.38 GO:0000932 ... P31941 27991903
    402407 5sww:C (3.151) BS03 ZN 3.5.4.38 GO:0000932 ... P31941 27991903
    402408 5sww:D (3.151) BS01 dna 3.5.4.38 GO:0000932 ... P31941 27991903
    402409 5sww:D (3.151) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 27991903
    402410 5swz:A (2.65) BS01 peptide ? N/A P01899 27717799
    402411 5swz:E (2.65) BS01 peptide N/A N/A N/A 27717799
    402412 5swz:F (2.65) BS01 peptide ? N/A P01899 27717799
    402413 5swz:J (2.65) BS01 peptide N/A N/A N/A 27717799
    402414 5swz:K (2.65) BS01 peptide ? N/A P01899 27717799
    402415 5swz:O (2.65) BS01 peptide N/A N/A N/A 27717799
    402416 5swz:P (2.65) BS01 peptide ? N/A P01899 27717799
    402417 5swz:T (2.65) BS01 peptide N/A N/A N/A 27717799
    402418 5sx0:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16211084
    402419 5sx0:A (2.0) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16211084
    402420 5sx0:A (2.0) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16211084
    402421 5sx0:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16211084
    402422 5sx0:B (2.0) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16211084
    402423 5sx1:A (1.8) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402424 5sx1:A (1.8) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402425 5sx1:A (1.8) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402426 5sx1:B (1.8) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402427 5sx1:B (1.8) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402428 5sx1:B (1.8) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402429 5sx1:B (1.8) BS04 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402430 5sx2:A (2.15) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402431 5sx2:A (2.15) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402432 5sx2:A (2.15) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402433 5sx2:B (2.15) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402434 5sx2:B (2.15) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402435 5sx2:B (2.15) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 17063492
    402436 5sx3:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402437 5sx3:A (2.0) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402438 5sx3:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402439 5sx3:B (2.0) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402440 5sx6:A (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402441 5sx6:A (1.9) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402442 5sx6:B (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402443 5sx6:B (1.9) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402444 5sx7:A (1.95) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402445 5sx7:A (1.95) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402446 5sx7:B (1.95) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402447 5sx7:B (1.95) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 16618106
    402448 5sx9:A (3.52) BS01 71L 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 28129991
    402449 5sxg:A (1.93) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402450 5sxg:A (1.93) BS02 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402451 5sxg:A (1.93) BS03 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402452 5sxg:B (1.93) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402453 5sxg:B (1.93) BS02 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402454 5sxg:B (1.93) BS03 PDO 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402455 5sxh:A (1.78) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402456 5sxh:B (1.78) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 29234087
    402457 5sxj:A (3.42) BS01 BHO 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 28129991
    402458 5sxk:B (3.55) BS01 71K ? N/A P27986 28129991
    402459 5sxm:A (2.0) BS01 peptide ? GO:0000122 ... P61964 27563068
    402460 5sxm:B (2.0) BS01 peptide ? GO:0000122 ... P61964 27563068
    402461 5sxn:A (2.1) BS01 74U 3.4.23.15 GO:0004190 ... P00797 27687967 MOAD: ic50=11uM
    BindingDB: IC50=11000nM
    402462 5sxp:A (1.65) BS01 peptide ? N/A Q14155 28235806
    402463 5sxp:B (1.65) BS01 peptide ? N/A Q14155 28235806
    402464 5sxp:C (1.65) BS01 peptide ? N/A Q14155 28235806
    402465 5sxp:D (1.65) BS01 peptide ? N/A Q14155 28235806
    402466 5sxq:A (2.1) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402467 5sxq:A (2.1) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402468 5sxq:A (2.1) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402469 5sxq:A (2.1) BS04 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402470 5sxq:B (2.1) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402471 5sxq:B (2.1) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402472 5sxq:B (2.1) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402473 5sxq:B (2.1) BS04 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402474 5sxr:A (1.69) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402475 5sxr:A (1.69) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402476 5sxr:B (1.69) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402477 5sxr:B (1.69) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402478 5sxr:B (1.69) BS03 ADP 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402479 5sxs:A (1.887) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402480 5sxs:A (1.887) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402481 5sxs:A (1.887) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402482 5sxs:B (1.887) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402483 5sxs:B (1.887) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402484 5sxs:B (1.887) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402485 5sxs:B (1.887) BS04 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402486 5sxs:B (1.887) BS05 AMP 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402487 5sxt:A (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402488 5sxt:A (1.9) BS02 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402489 5sxt:B (1.9) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402490 5sxt:B (1.9) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402491 5sxt:B (1.9) BS03 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402492 5sxu:A (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402493 5sxu:A (3.1) BS02 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402494 5sxu:A (3.1) BS03 3CN ? GO:0004888 ... E0SJQ4 27916519
    402495 5sxu:B (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402496 5sxu:B (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    402497 5sxu:C (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402498 5sxu:C (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    402499 5sxu:D (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402500 5sxu:D (3.1) BS02 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402501 5sxu:E (3.1) BS01 3CN ? GO:0004888 ... E0SJQ4 27916519
    402502 5sxu:E (3.1) BS02 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402503 5sxu:E (3.1) BS03 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402504 5sxu:F (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402505 5sxu:F (3.1) BS02 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402506 5sxu:F (3.1) BS03 3CN ? GO:0004888 ... E0SJQ4 27916519
    402507 5sxu:G (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402508 5sxu:G (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    402509 5sxu:H (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402510 5sxu:H (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    402511 5sxu:I (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402512 5sxu:I (3.1) BS02 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402513 5sxu:J (3.1) BS01 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402514 5sxu:J (3.1) BS02 BRJ ? GO:0004888 ... E0SJQ4 27916519
    402515 5sxv:A (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402516 5sxv:A (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402517 5sxv:B (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402518 5sxv:B (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402519 5sxv:B (3.4) BS03 BRJ ? GO:0004888 ... P0C7B7 27916519
    402520 5sxv:C (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402521 5sxv:C (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402522 5sxv:D (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402523 5sxv:D (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402524 5sxv:D (3.4) BS03 BRJ ? GO:0004888 ... P0C7B7 27916519
    402525 5sxv:E (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402526 5sxv:E (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402527 5sxv:F (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402528 5sxv:F (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402529 5sxv:F (3.4) BS03 BRJ ? GO:0004888 ... P0C7B7 27916519
    402530 5sxv:G (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402531 5sxv:G (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402532 5sxv:H (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402533 5sxv:H (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402534 5sxv:I (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402535 5sxv:I (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402536 5sxv:J (3.4) BS01 BRJ ? GO:0004888 ... P0C7B7 27916519
    402537 5sxv:J (3.4) BS02 BRJ ? GO:0004888 ... P0C7B7 27916519
    402538 5sxv:J (3.4) BS03 BRJ ? GO:0004888 ... P0C7B7 27916519
    402539 5sxw:A (1.6) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402540 5sxw:A (1.6) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402541 5sxw:B (1.6) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402542 5sxw:B (1.6) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402543 5sxx:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402544 5sxx:A (1.7) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402545 5sxx:A (1.7) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402546 5sxx:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402547 5sxx:B (1.7) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402548 5sxx:B (1.7) BS03 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    402549 5sy1:A (3.9) BS01 CLR ? GO:0005516 ... F1RAX4 27563101
    402550 5sy1:B (3.9) BS01 CLR ? GO:0005516 ... F1RAX4 27563101
    402551 5sy1:B (3.9) BS02 CLR ? GO:0005516 ... F1RAX4 27563101
    402552 5sy1:C (3.9) BS01 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402553 5sy1:C (3.9) BS02 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402554 5sy1:C (3.9) BS03 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402555 5sy1:C (3.9) BS04 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402556 5sy1:D (3.9) BS01 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402557 5sy1:D (3.9) BS02 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402558 5sy1:D (3.9) BS03 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402559 5sy1:D (3.9) BS04 CA ? GO:0005509 ... A0A1C7D1B9 27563101
    402560 5sy2:A (2.25) BS01 74V 3.4.23.15 GO:0004190 ... P00797 27687967 MOAD: ic50=11uM
    402561 5sy2:B (2.25) BS01 74V 3.4.23.15 GO:0004190 ... P00797 27687967 MOAD: ic50=11uM
    402562 5sy3:A (2.3) BS01 74Z 3.4.23.15 GO:0004190 ... P00797 27687967 MOAD: ic50=43uM
    BindingDB: IC50=43000nM
    402563 5sy7:A (4.2) BS01 dna ? GO:0003700 ... P53762 27782878
    402564 5sy7:A (4.2) BS02 dna ? GO:0003700 ... P53762 27782878
    402565 5sy7:B (4.2) BS01 dna ? GO:0006355 ... Q9QZQ0 27782878
    402566 5sy7:B (4.2) BS02 dna ? GO:0006355 ... Q9QZQ0 27782878
    402567 5syb:A (1.82) BS01 ZN ? GO:0000398 ... Q7RTV0 28541300
    402568 5syb:A (1.82) BS02 ZN ? GO:0000398 ... Q7RTV0 28541300
    402569 5syb:A (1.82) BS03 ZN ? GO:0000398 ... Q7RTV0 28541300
    402570 5syb:B (1.82) BS01 ZN ? GO:0000398 ... Q7RTV0 28541300
    402571 5syb:B (1.82) BS02 ZN ? GO:0000398 ... Q7RTV0 28541300
    402572 5syb:B (1.82) BS03 ZN ? GO:0000398 ... Q7RTV0 28541300
    402573 5syc:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402574 5syc:B (3.5) BS01 GDP ? GO:0000226 ... P02554 28104363
    402575 5syc:B (3.5) BS02 POU ? GO:0000226 ... P02554 28104363
    402576 5syd:A (2.397) BS01 CU ? GO:0005507 ... P00282 N/A
    402577 5syd:B (2.397) BS01 CU ? GO:0005507 ... P00282 N/A
    402578 5syd:B (2.397) BS02 CU ? GO:0005507 ... P00282 N/A
    402579 5sye:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402580 5sye:A (3.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402581 5sye:B (3.5) BS01 GDP ? GO:0000226 ... P02554 28104363
    402582 5sye:B (3.5) BS02 TA1 ? GO:0000226 ... P02554 28104363 BindingDB: EC50=520nM
    402583 5sye:B (3.5) BS03 POU ? GO:0000226 ... P02554 28104363
    402584 5syf:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402585 5syf:A (3.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402586 5syf:B (3.5) BS01 GDP ? GO:0000226 ... P02554 28104363
    402587 5syf:B (3.5) BS02 TA1 ? GO:0000226 ... P02554 28104363 BindingDB: EC50=520nM
    402588 5syg:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402589 5syg:A (3.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 28104363
    402590 5syg:B (3.5) BS01 GDP ? GO:0000226 ... P02554 28104363
    402591 5syg:B (3.5) BS02 ZPN ? GO:0000226 ... P02554 28104363
    402592 5syh:A (1.65) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 24785434
    402593 5syh:A (1.65) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 24785434
    402594 5syh:B (1.65) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 24785434
    402595 5syh:B (1.65) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 24785434
    402596 5syi:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 24568093
    402597 5syi:A (1.7) BS02 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 24568093
    402598 5syi:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 24568093
    402599 5syi:B (1.7) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 24568093
    402600 5syi:B (1.7) BS03 NIZ 1.11.1.21 GO:0004096 ... Q3JNW6 24568093

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).