SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    403001 5t0c:BA (3.8) BS01 ATP ? GO:0000502 ... P35998 27791164
    403002 5t0c:BB (3.8) BS01 ADP ? GO:0000502 ... P62191 27791164
    403003 5t0c:BC (3.8) BS01 ADP ? GO:0000502 ... P62195 27791164
    403004 5t0c:BD (3.8) BS01 ATP ? GO:0000502 ... P43686 27791164
    403005 5t0c:BE (3.8) BS01 ATP ? GO:0000502 ... P62333 27791164
    403006 5t0c:BE (3.8) BS02 ATP ? GO:0000502 ... P62333 27791164
    403007 5t0c:BF (3.8) BS01 ATP ? GO:0000502 ... P17980 27791164
    403008 5t0c:BF (3.8) BS02 ATP ? GO:0000502 ... P17980 27791164
    403009 5t0c:Bc (3.8) BS01 ZN 3.4.19.- GO:0000502 ... O00487 27791164
    403010 5t0d:A (2.864) BS01 SIA ? GO:0016020 ... A0A0J9X268 28694323
    403011 5t0e:A (2.089) BS01 GAL ? GO:0016020 ... A0A0J9X268 28694323
    403012 5t0e:A (2.089) BS02 SIA ? GO:0016020 ... A0A0J9X268 28694323
    403013 5t0g:A (4.4) BS01 ATP ? GO:0000502 ... P35998 27791164
    403014 5t0g:B (4.4) BS01 ATP ? GO:0000502 ... P62191 27791164
    403015 5t0g:B (4.4) BS02 ATP ? GO:0000502 ... P62191 27791164
    403016 5t0g:C (4.4) BS01 ATP ? GO:0000502 ... P62195 27791164
    403017 5t0g:D (4.4) BS01 ATP ? GO:0000502 ... P43686 27791164
    403018 5t0g:E (4.4) BS01 ATP ? GO:0000502 ... P62333 27791164
    403019 5t0g:E (4.4) BS02 ATP ? GO:0000502 ... P62333 27791164
    403020 5t0g:F (4.4) BS01 ATP ? GO:0000502 ... P17980 27791164
    403021 5t0g:F (4.4) BS02 ATP ? GO:0000502 ... P17980 27791164
    403022 5t0g:c (4.4) BS01 ZN 3.4.19.- GO:0000502 ... O00487 27791164
    403023 5t0h:A (6.8) BS01 ADP ? GO:0000502 ... P35998 27791164
    403024 5t0h:B (6.8) BS01 ADP ? GO:0000502 ... P62191 27791164
    403025 5t0h:C (6.8) BS01 ADP ? GO:0000502 ... P62195 27791164
    403026 5t0h:D (6.8) BS01 ADP ? GO:0000502 ... P43686 27791164
    403027 5t0h:E (6.8) BS01 ADP ? GO:0000502 ... P62333 27791164
    403028 5t0h:E (6.8) BS02 ADP ? GO:0000502 ... P62333 27791164
    403029 5t0h:F (6.8) BS01 ADP ? GO:0000502 ... P17980 27791164
    403030 5t0h:F (6.8) BS02 ADP ? GO:0000502 ... P17980 27791164
    403031 5t0h:V (6.8) BS01 peptide ? GO:0000502 ... O43242 27791164
    403032 5t0h:Y (6.8) BS01 peptide ? GO:0000502 ... Q15008 27791164
    403033 5t0i:A (8.0) BS01 ATP ? GO:0000502 ... P35998 27791164
    403034 5t0i:B (8.0) BS01 ATP ? GO:0000502 ... P62191 27791164
    403035 5t0i:D (8.0) BS01 ATP ? GO:0000502 ... P43686 27791164
    403036 5t0i:E (8.0) BS01 ATP ? GO:0000502 ... P62333 27791164
    403037 5t0i:F (8.0) BS01 ATP ? GO:0000502 ... P17980 27791164
    403038 5t0i:F (8.0) BS02 ATP ? GO:0000502 ... P17980 27791164
    403039 5t0j:A (8.0) BS01 ATP ? GO:0000502 ... P35998 27791164
    403040 5t0j:A (8.0) BS02 ATP ? GO:0000502 ... P35998 27791164
    403041 5t0j:D (8.0) BS01 ATP ? GO:0000502 ... P43686 27791164
    403042 5t0j:E (8.0) BS01 ATP ? GO:0000502 ... P62333 27791164
    403043 5t0j:E (8.0) BS02 ATP ? GO:0000502 ... P62333 27791164
    403044 5t0j:F (8.0) BS01 ATP ? GO:0000502 ... P17980 27791164
    403045 5t0j:F (8.0) BS02 ATP ? GO:0000502 ... P17980 27791164
    403046 5t0k:A (1.7) BS01 peptide 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403047 5t0k:A (1.7) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403048 5t0k:A (1.7) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403049 5t0k:A (1.7) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403050 5t0k:A (1.7) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403051 5t0k:A (1.7) BS06 SAM 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403052 5t0k:B (1.7) BS01 peptide 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403053 5t0k:B (1.7) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403054 5t0k:B (1.7) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403055 5t0k:B (1.7) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403056 5t0k:B (1.7) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403057 5t0k:B (1.7) BS06 SAM 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403058 5t0l:A (3.13) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750
    403059 5t0l:A (3.13) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750
    403060 5t0l:A (3.13) BS03 73X 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750 BindingDB: IC50=17nM
    403061 5t0l:A (3.13) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750
    403062 5t0l:B (3.13) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750
    403063 5t0l:B (3.13) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750
    403064 5t0l:B (3.13) BS03 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750
    403065 5t0l:B (3.13) BS04 73X 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 27994750 BindingDB: IC50=17nM
    403066 5t0m:A (1.896) BS01 peptide 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403067 5t0m:A (1.896) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403068 5t0m:A (1.896) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403069 5t0m:A (1.896) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403070 5t0m:A (1.896) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403071 5t0m:A (1.896) BS06 SAM 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403072 5t0m:A (1.896) BS07 SAH 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579 BindingDB: Ki=570nM, IC50=2000nM
    403073 5t0m:B (1.896) BS01 peptide 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403074 5t0m:B (1.896) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403075 5t0m:B (1.896) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403076 5t0m:B (1.896) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403077 5t0m:B (1.896) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403078 5t0m:B (1.896) BS06 SAM 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 27648579
    403079 5t0n:A (3.004) BS01 LEU 1.11.1.- GO:0001932 ... P58004 27649739
    403080 5t0n:B (3.004) BS01 LEU 1.11.1.- GO:0001932 ... P58004 27649739
    403081 5t0n:C (3.004) BS01 LEU 1.11.1.- GO:0001932 ... P58004 27649739
    403082 5t0n:D (3.004) BS01 LEU 1.11.1.- GO:0001932 ... P58004 27649739
    403083 5t0n:E (3.004) BS01 LEU 1.11.1.- GO:0001932 ... P58004 27649739
    403084 5t0p:A (2.5) BS01 73A 2.7.10.2 GO:0004672 ... P00523 N/A
    403085 5t0p:B (2.5) BS01 73A 2.7.10.2 GO:0004672 ... P00523 N/A
    403086 5t0q:A (2.15) BS01 peptide ? GO:0003700 ... Q9FIP9 28137867
    403087 5t0u:A (3.199) BS01 dna ? N/A P49711 28529057
    403088 5t0u:A (3.199) BS02 dna ? N/A P49711 28529057
    403089 5t0u:A (3.199) BS03 ZN ? N/A P49711 28529057
    403090 5t0u:A (3.199) BS04 ZN ? N/A P49711 28529057
    403091 5t0u:A (3.199) BS05 ZN ? N/A P49711 28529057
    403092 5t0u:A (3.199) BS06 ZN ? N/A P49711 28529057
    403093 5t0u:A (3.199) BS07 ZN ? N/A P49711 28529057
    403094 5t0u:A (3.199) BS08 ZN ? N/A P49711 28529057
    403095 5t0u:D (3.199) BS01 dna ? N/A P49711 28529057
    403096 5t0u:D (3.199) BS02 dna ? N/A P49711 28529057
    403097 5t0u:D (3.199) BS03 ZN ? N/A P49711 28529057
    403098 5t0u:D (3.199) BS04 ZN ? N/A P49711 28529057
    403099 5t0u:D (3.199) BS05 ZN ? N/A P49711 28529057
    403100 5t0u:D (3.199) BS06 ZN ? N/A P49711 28529057
    403101 5t0u:D (3.199) BS07 ZN ? N/A P49711 28529057
    403102 5t0u:D (3.199) BS08 ZN ? N/A P49711 28529057
    403103 5t0w:A (2.59) BS01 ARG N/A GO:0015276 ... N/A N/A
    403104 5t0w:B (2.59) BS01 ARG N/A GO:0015276 ... N/A N/A
    403105 5t0w:C (2.59) BS01 ARG N/A GO:0015276 ... N/A N/A
    403106 5t0w:D (2.59) BS01 ARG N/A GO:0015276 ... N/A N/A
    403107 5t0x:A (-1.00) BS01 peptide ? GO:0005102 ... P0DP33 N/A
    403108 5t0x:A (-1.00) BS02 peptide ? GO:0005102 ... P0DP33 N/A
    403109 5t0x:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 N/A
    403110 5t0x:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 N/A
    403111 5t0x:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 N/A
    403112 5t0x:A (-1.00) BS06 CA ? GO:0005102 ... P0DP33 N/A
    403113 5t13:A (2.19) BS01 CO2 3.5.2.15 GO:0016787 ... P0A3V4 28345631
    403114 5t13:A (2.19) BS02 CO2 3.5.2.15 GO:0016787 ... P0A3V4 28345631
    403115 5t13:A (2.19) BS03 MG 3.5.2.15 GO:0016787 ... P0A3V4 28345631
    403116 5t14:A (3.0) BS01 dna 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403117 5t14:A (3.0) BS02 dna 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403118 5t14:A (3.0) BS03 dna 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403119 5t14:A (3.0) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403120 5t14:A (3.0) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403121 5t14:A (3.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403122 5t14:B (3.0) BS01 dna 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403123 5t14:B (3.0) BS02 dna 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403124 5t14:B (3.0) BS03 dna 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403125 5t14:B (3.0) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403126 5t14:B (3.0) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403127 5t14:B (3.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    403128 5t15:B (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    403129 5t15:B (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    403130 5t15:E (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    403131 5t15:E (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    403132 5t15:G (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    403133 5t15:G (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    403134 5t15:I (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    403135 5t15:I (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    403136 5t16:A (2.783) BS01 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403137 5t16:A (2.783) BS02 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403138 5t16:B (2.783) BS01 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403139 5t16:B (2.783) BS02 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403140 5t16:I (2.783) BS01 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403141 5t16:I (2.783) BS02 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403142 5t16:J (2.783) BS01 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403143 5t16:J (2.783) BS02 rna 3.1.26.3 GO:0003725 ... Q02555 28111020
    403144 5t18:A (1.5) BS01 73T 2.7.10.2 GO:0004672 ... Q06187 27583770 MOAD: ic50=0.5nM
    BindingDB: IC50=0.410nM
    403145 5t19:A (2.1001) BS01 73U 3.1.3.48 GO:0004725 ... P18031 28345882
    403146 5t1a:A (2.806) BS01 73R 3.2.1.17 GO:0003796 ... P00720
    P41597
    27926736
    403147 5t1a:A (2.806) BS02 VT5 3.2.1.17 GO:0003796 ... P00720
    P41597
    27926736
    403148 5t1a:A (2.806) BS03 ZN 3.2.1.17 GO:0003796 ... P00720
    P41597
    27926736
    403149 5t1e:A (1.83) BS01 FAD ? GO:0000166 ... Q0UIL6 28584265
    403150 5t1f:A (1.98) BS01 FAD ? GO:0000166 ... Q0UIL6 28584265
    403151 5t1g:A (1.9) BS01 peptide ? GO:0005634 ... P83916 N/A
    403152 5t1h:A (2.11) BS01 75E 2.7.11.1 GO:0004672 ... P68400 N/A
    403153 5t1h:B (2.11) BS01 75E 2.7.11.1 GO:0004672 ... P68400 N/A
    403154 5t1i:A (1.6) BS01 peptide ? GO:0005634 ... Q13185 28223359
    403155 5t1i:B (1.6) BS01 peptide ? GO:0005634 ... Q13185 28223359
    403156 5t1j:A (2.947) BS01 dna ? GO:0000978 ... Q9JKD8 27791029
    403157 5t1j:A (2.947) BS02 dna ? GO:0000978 ... Q9JKD8 27791029
    403158 5t1j:B (2.947) BS01 dna ? GO:0000978 ... Q9JKD8 27791029
    403159 5t1j:B (2.947) BS02 dna ? GO:0000978 ... Q9JKD8 27791029
    403160 5t1k:A (2.48) BS01 peptide N/A N/A N/A 27834791
    403161 5t1k:B (2.48) BS01 peptide N/A N/A N/A 27834791
    403162 5t1k:C (2.48) BS01 peptide N/A N/A N/A 27834791
    403163 5t1k:C (2.48) BS02 MRY N/A N/A N/A 27834791
    403164 5t1k:D (2.48) BS01 peptide N/A N/A N/A 27834791
    403165 5t1l:A (2.48) BS01 peptide N/A N/A N/A 27834791
    403166 5t1l:B (2.48) BS01 peptide N/A N/A N/A 27834791
    403167 5t1l:C (2.48) BS01 peptide N/A N/A N/A 27834791
    403168 5t1l:D (2.48) BS01 peptide N/A N/A N/A 27834791
    403169 5t1m:A (2.53) BS01 peptide N/A N/A N/A 27834791
    403170 5t1m:B (2.53) BS01 peptide N/A N/A N/A 27834791
    403171 5t1m:B (2.53) BS02 peptide N/A N/A N/A 27834791
    403172 5t1m:C (2.53) BS01 peptide N/A N/A N/A 27834791
    403173 5t1m:D (2.53) BS01 peptide N/A N/A N/A 27834791
    403174 5t1p:A (2.0) BS01 GPE N/A N/A N/A N/A
    403175 5t1p:B (2.0) BS01 GPE N/A N/A N/A N/A
    403176 5t1p:C (2.0) BS01 GPE N/A N/A N/A N/A
    403177 5t1p:D (2.0) BS01 GPE N/A N/A N/A N/A
    403178 5t1s:A (2.3) BS01 76Q 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=84nM
    403179 5t1s:B (2.3) BS01 76Q 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=84nM
    403180 5t1s:C (2.3) BS01 76Q 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=84nM
    403181 5t1s:D (2.3) BS01 76Q 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=84nM
    403182 5t1t:A (2.34) BS01 76P 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=58nM
    BindingDB: IC50=58nM
    403183 5t1t:B (2.34) BS01 76P 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=58nM
    BindingDB: IC50=58nM
    403184 5t1t:C (2.34) BS01 76P 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=58nM
    BindingDB: IC50=58nM
    403185 5t1t:D (2.34) BS01 76P 2.7.11.1 GO:0000287 ... Q9NWZ3 28501511 MOAD: ic50=58nM
    BindingDB: IC50=58nM
    403186 5t1u:A (1.78) BS01 P6U 3.4.23.46 GO:0004190 ... P56817 27997172 MOAD: ic50=0.069uM
    BindingDB: IC50=69nM
    403187 5t1w:A (2.96) BS01 74B 3.4.23.46 GO:0004190 ... P56817 27997172 BindingDB: IC50=77nM
    403188 5t1z:A (2.102) BS01 peptide ? N/A P03372 29739819
    403189 5t1z:A (2.102) BS02 Q97 ? N/A P03372 29739819
    403190 5t1z:B (2.102) BS01 peptide ? N/A P03372 29739819
    403191 5t1z:B (2.102) BS02 Q97 ? N/A P03372 29739819
    403192 5t20:A (1.91) BS01 MAN ? N/A A5HMM7 27558840
    403193 5t20:A (1.91) BS02 MAN ? N/A A5HMM7 27558840
    403194 5t20:B (1.91) BS01 MAN ? N/A Q39487 27558840
    403195 5t20:B (1.91) BS02 MAN ? N/A Q39487 27558840
    403196 5t20:B (1.91) BS03 MAN ? N/A Q39487 27558840
    403197 5t20:C (1.91) BS01 MAN ? N/A A5HMM7 27558840
    403198 5t20:C (1.91) BS02 MAN ? N/A A5HMM7 27558840
    403199 5t20:D (1.91) BS01 MAN ? N/A Q39487 27558840
    403200 5t20:D (1.91) BS02 MAN ? N/A Q39487 27558840

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).