SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    403601 5t3s:D (4.5) BS02 MAN N/A N/A N/A 27617678
    403602 5t3s:H (4.5) BS01 MAN N/A N/A N/A 27617678
    403603 5t3s:L (4.5) BS01 MAN N/A N/A N/A 27617678
    403604 5t3s:L (4.5) BS02 MAN N/A N/A N/A 27617678
    403605 5t3x:B (3.9) BS01 FUC ? GO:0005198 ... Q2N0S6 27617431
    403606 5t3x:H (3.9) BS01 BMA N/A N/A N/A 27617431
    403607 5t3x:H (3.9) BS02 MAN N/A N/A N/A 27617431
    403608 5t3x:L (3.9) BS01 MAN N/A N/A N/A 27617431
    403609 5t3x:L (3.9) BS02 MAN N/A N/A N/A 27617431
    403610 5t3x:L (3.9) BS03 MAN N/A N/A N/A 27617431
    403611 5t3z:G (3.5) BS01 FUC ? GO:0019031 ... Q2N0S6 27617431
    403612 5t3z:L (3.5) BS01 MAN N/A N/A N/A 27617431
    403613 5t3z:L (3.5) BS02 MAN N/A N/A N/A 27617431
    403614 5t3z:L (3.5) BS03 MAN N/A N/A N/A 27617431
    403615 5t41:A (3.149) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    403616 5t45:A (2.8) BS01 52E ? GO:0003774 ... P10587 27815532
    403617 5t45:A (2.8) BS02 MG ? GO:0003774 ... P10587 27815532
    403618 5t45:A (2.8) BS03 BEF ? GO:0003774 ... P10587 27815532
    403619 5t45:A (2.8) BS04 ADP ? GO:0003774 ... P10587 27815532
    403620 5t46:A (1.53) BS01 MGP ? GO:0000082 ... P06730 27773676 BindingDB: Ki=28nM
    403621 5t46:C (1.53) BS01 MGP ? GO:0000082 ... P06730 27773676 BindingDB: Ki=28nM
    403622 5t48:A (2.19) BS01 MGP ? GO:0003723 ... P48598 27773676
    403623 5t4a:A (2.1) BS01 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403624 5t4a:A (2.1) BS02 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403625 5t4a:A (2.1) BS03 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403626 5t4a:A (2.1) BS04 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403627 5t4b:A (1.76) BS01 75N 3.4.14.5 GO:0001618 ... P27487 27670099 MOAD: ic50=0.42nM
    403628 5t4b:B (1.76) BS01 75N 3.4.14.5 GO:0001618 ... P27487 27670099 MOAD: ic50=0.42nM
    403629 5t4c:A (1.8) BS01 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403630 5t4c:A (1.8) BS02 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403631 5t4c:A (1.8) BS03 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403632 5t4c:A (1.8) BS04 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403633 5t4c:A (1.8) BS05 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403634 5t4c:A (1.8) BS06 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403635 5t4c:A (1.8) BS07 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403636 5t4c:A (1.8) BS08 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403637 5t4c:A (1.8) BS09 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403638 5t4e:A (1.77) BS01 75L 3.4.14.5 GO:0001618 ... P27487 27670099 MOAD: ic50=4376nM
    BindingDB: IC50=4376nM
    403639 5t4e:B (1.77) BS01 75L 3.4.14.5 GO:0001618 ... P27487 27670099 MOAD: ic50=4376nM
    BindingDB: IC50=4376nM
    403640 5t4f:A (1.9) BS01 75M 3.4.14.5 GO:0001618 ... P27487 27670099 MOAD: ic50=10nM
    403641 5t4f:B (1.9) BS01 75M 3.4.14.5 GO:0001618 ... P27487 27670099 MOAD: ic50=10nM
    403642 5t4g:A (1.8) BS01 GLC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403643 5t4g:A (1.8) BS02 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403644 5t4g:A (1.8) BS03 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403645 5t4g:A (1.8) BS04 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403646 5t4g:A (1.8) BS05 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403647 5t4g:A (1.8) BS06 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403648 5t4g:A (1.8) BS07 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403649 5t4g:A (1.8) BS08 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403650 5t4g:A (1.8) BS09 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403651 5t4g:A (1.8) BS10 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403652 5t4g:A (1.8) BS11 BGC 3.2.1.39 GO:0052861 ... Q9KG76 28781080
    403653 5t4h:A (2.61) BS01 75J 3.4.14.5 GO:0001618 ... P27487 27670099
    403654 5t4h:B (2.61) BS01 75J 3.4.14.5 GO:0001618 ... P27487 27670099
    403655 5t4i:A (2.389) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403656 5t4i:A (2.389) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403657 5t4i:A (2.389) BS03 MN 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403658 5t4i:B (2.389) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403659 5t4i:B (2.389) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403660 5t4i:B (2.389) BS03 MN 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403661 5t4j:B (2.231) BS01 PLP ? GO:0009058 ... P94426 28348215
    403662 5t4j:B (2.231) BS02 ABU ? GO:0009058 ... P94426 28348215
    403663 5t4k:A (2.245) BS01 76U ? GO:0009058 ... P94426 28348215
    403664 5t4l:A (1.53) BS01 77E 2.6.1.1 GO:0003824 ... P00509 28348215
    403665 5t4m:A (2.24) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    403666 5t4m:A (2.24) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    403667 5t4m:A (2.24) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    403668 5t4m:A (2.24) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    403669 5t4m:A (2.24) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    403670 5t4m:B (2.24) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    403671 5t4m:B (2.24) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    403672 5t4m:B (2.24) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    403673 5t4m:B (2.24) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    403674 5t4m:B (2.24) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    403675 5t4n:A (2.701) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    403676 5t4n:A (2.701) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    403677 5t4n:A (2.701) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    403678 5t4n:A (2.701) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    403679 5t4n:A (2.701) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    403680 5t4n:B (2.701) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    403681 5t4n:B (2.701) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    403682 5t4n:B (2.701) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    403683 5t4n:B (2.701) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    403684 5t4n:B (2.701) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    403685 5t4o:A (6.9) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403686 5t4o:B (6.9) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403687 5t4o:C (6.9) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403688 5t4o:F (6.9) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 28001127
    403689 5t4p:A (7.77) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403690 5t4p:B (7.77) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403691 5t4p:C (7.77) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403692 5t4p:E (7.77) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 28001127
    403693 5t4q:A (8.53) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403694 5t4q:B (8.53) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403695 5t4q:C (8.53) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    403696 5t4q:D (8.53) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 28001127
    403697 5t4s:B (2.64) BS01 77O 3.4.23.15 GO:0004190 ... P00797 27720325
    403698 5t4t:A (1.511) BS01 ACT 3.8.1.3 GO:0003824 ... Q6NAM1 28104837
    403699 5t4t:B (1.511) BS01 ACT 3.8.1.3 GO:0003824 ... Q6NAM1 28104837
    403700 5t4u:A (1.5) BS01 12Q ? N/A P55201 28068087 MOAD: ic50=4800nM
    BindingDB: IC50=4800nM
    403701 5t4v:A (1.65) BS01 N48 ? N/A P55201 28068087 MOAD: ic50=60nM
    BindingDB: IC50=60nM
    403702 5t4y:A (3.1) BS01 MG ? GO:0009279 ... Q8A6W4 28077872
    403703 5t4y:A (3.1) BS02 MG ? GO:0009279 ... Q8A6W4 28077872
    403704 5t4y:B (3.1) BS01 MG ? GO:0009279 ... Q8A6W4 28077872
    403705 5t4y:B (3.1) BS02 MG ? GO:0009279 ... Q8A6W4 28077872
    403706 5t4y:C (3.1) BS01 MG ? N/A Q8A6W3 28077872
    403707 5t4z:H (1.991) BS01 MAN N/A N/A N/A 28249163
    403708 5t4z:H (1.991) BS02 MAN N/A N/A N/A 28249163
    403709 5t4z:L (1.991) BS01 CA N/A N/A N/A 28249163
    403710 5t50:A (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    403711 5t50:A (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    403712 5t50:B (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    403713 5t50:B (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    403714 5t52:A (1.7) BS01 CA ? GO:0005576 ... P86993 27973758
    403715 5t52:A (1.7) BS02 CA ? GO:0005576 ... P86993 27973758
    403716 5t52:B (1.7) BS01 CA ? GO:0005576 ... P86993 27973758
    403717 5t52:B (1.7) BS02 CA ? GO:0005576 ... P86993 27973758
    403718 5t53:A (2.699) BS01 ACO 2.3.1.- N/A Q5FWF5 27803161
    403719 5t53:A (2.699) BS02 ZN 2.3.1.- N/A Q5FWF5 27803161
    403720 5t54:A (1.65) BS01 FUC ? GO:0005576 ... P86993 27973758
    403721 5t54:A (1.65) BS02 CA ? GO:0005576 ... P86993 27973758
    403722 5t54:A (1.65) BS03 CA ? GO:0005576 ... P86993 27973758
    403723 5t54:B (1.65) BS01 FUC ? GO:0005576 ... P86993 27973758
    403724 5t54:B (1.65) BS02 CA ? GO:0005576 ... P86993 27973758
    403725 5t54:B (1.65) BS03 CA ? GO:0005576 ... P86993 27973758
    403726 5t55:A (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    403727 5t55:A (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    403728 5t55:B (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    403729 5t55:B (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    403730 5t57:A (1.65) BS01 NAD 1.1.1.421 GO:0000166 ... F8GV06 N/A
    403731 5t57:A (1.65) BS02 CA 1.1.1.421 GO:0000166 ... F8GV06 N/A
    403732 5t57:A (1.65) BS03 ZN 1.1.1.421 GO:0000166 ... F8GV06 N/A
    403733 5t5c:A (1.851) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403734 5t5c:A (1.851) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403735 5t5c:B (1.851) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403736 5t5c:B (1.851) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    403737 5t5g:A (2.1) BS01 75P 2.1.1.-
    2.1.1.361
    GO:0042799 ... Q9NQR1 27804297
    403738 5t5h:I (2.54) BS01 rna ? GO:0003723 ... Q4DZP2 27791004
    403739 5t5h:I (2.54) BS02 rna ? GO:0003723 ... Q4DZP2 27791004
    403740 5t5h:L (2.54) BS01 rna ? GO:0003735 ... Q4CNF4 27791004
    403741 5t5h:L (2.54) BS02 rna ? GO:0003735 ... Q4CNF4 27791004
    403742 5t5h:N (2.54) BS01 rna ? GO:0003723 ... Q4E661 27791004
    403743 5t5h:N (2.54) BS02 rna ? GO:0003723 ... Q4E661 27791004
    403744 5t5h:O (2.54) BS01 rna ? GO:0003729 ... V5DCT1 27791004
    403745 5t5h:O (2.54) BS02 rna ? GO:0003729 ... V5DCT1 27791004
    403746 5t5h:O (2.54) BS03 rna ? GO:0003729 ... V5DCT1 27791004
    403747 5t5h:O (2.54) BS04 rna ? GO:0003729 ... V5DCT1 27791004
    403748 5t5h:P (2.54) BS01 rna ? GO:0003723 ... Q4DQ35 27791004
    403749 5t5h:P (2.54) BS02 rna ? GO:0003723 ... Q4DQ35 27791004
    403750 5t5h:Q (2.54) BS01 rna ? GO:0002181 ... Q4CTG9 27791004
    403751 5t5h:Q (2.54) BS02 rna ? GO:0002181 ... Q4CTG9 27791004
    403752 5t5h:Q (2.54) BS03 rna ? GO:0002181 ... Q4CTG9 27791004
    403753 5t5h:R (2.54) BS01 rna ? GO:0002181 ... Q4DC23 27791004
    403754 5t5h:R (2.54) BS02 rna ? GO:0002181 ... Q4DC23 27791004
    403755 5t5h:R (2.54) BS03 rna ? GO:0002181 ... Q4DC23 27791004
    403756 5t5h:R (2.54) BS04 rna ? GO:0002181 ... Q4DC23 27791004
    403757 5t5h:R (2.54) BS05 MG ? GO:0002181 ... Q4DC23 27791004
    403758 5t5h:S (2.54) BS01 rna ? GO:0003735 ... Q4DZ31 27791004
    403759 5t5h:S (2.54) BS02 rna ? GO:0003735 ... Q4DZ31 27791004
    403760 5t5h:S (2.54) BS03 rna ? GO:0003735 ... Q4DZ31 27791004
    403761 5t5h:T (2.54) BS01 rna ? GO:0003723 ... Q9BMP1 27791004
    403762 5t5h:T (2.54) BS02 rna ? GO:0003723 ... Q9BMP1 27791004
    403763 5t5h:T (2.54) BS03 rna ? GO:0003723 ... Q9BMP1 27791004
    403764 5t5h:T (2.54) BS04 rna ? GO:0003723 ... Q9BMP1 27791004
    403765 5t5h:U (2.54) BS01 rna ? GO:0003735 ... Q4DED2 27791004
    403766 5t5h:U (2.54) BS02 rna ? GO:0003735 ... Q4DED2 27791004
    403767 5t5h:U (2.54) BS03 rna ? GO:0003735 ... Q4DED2 27791004
    403768 5t5h:V (2.54) BS01 rna ? GO:0003735 ... Q4DZN3 27791004
    403769 5t5h:W (2.54) BS01 rna ? GO:0003735 ... Q4E4R0 27791004
    403770 5t5h:W (2.54) BS02 rna ? GO:0003735 ... Q4E4R0 27791004
    403771 5t5h:X (2.54) BS01 rna ? GO:0003735 ... Q4E2Y1 27791004
    403772 5t5h:X (2.54) BS02 rna ? GO:0003735 ... Q4E2Y1 27791004
    403773 5t5h:X (2.54) BS03 rna ? GO:0003735 ... Q4E2Y1 27791004
    403774 5t5h:Y (2.54) BS01 rna ? N/A Q4E078 27791004
    403775 5t5h:Y (2.54) BS02 rna ? N/A Q4E078 27791004
    403776 5t5h:Y (2.54) BS03 rna ? N/A Q4E078 27791004
    403777 5t5h:Z (2.54) BS01 rna ? GO:0003723 ... Q4DG45 27791004
    403778 5t5h:Z (2.54) BS02 rna ? GO:0003723 ... Q4DG45 27791004
    403779 5t5h:a (2.54) BS01 rna ? GO:0003735 ... Q9U4H7 27791004
    403780 5t5h:a (2.54) BS02 rna ? GO:0003735 ... Q9U4H7 27791004
    403781 5t5h:b (2.54) BS01 rna ? GO:0003735 ... Q4E4Q8 27791004
    403782 5t5h:b (2.54) BS02 rna ? GO:0003735 ... Q4E4Q8 27791004
    403783 5t5h:c (2.54) BS01 rna ? GO:0003735 ... O00822 27791004
    403784 5t5h:d (2.54) BS01 rna ? GO:0003735 ... Q4CPD8 27791004
    403785 5t5h:d (2.54) BS02 rna ? GO:0003735 ... Q4CPD8 27791004
    403786 5t5h:e (2.54) BS01 rna ? GO:0002181 ... Q4DPQ8 27791004
    403787 5t5h:e (2.54) BS02 rna ? GO:0002181 ... Q4DPQ8 27791004
    403788 5t5h:e (2.54) BS03 rna ? GO:0002181 ... Q4DPQ8 27791004
    403789 5t5h:f (2.54) BS01 rna ? GO:0003735 ... V5B599 27791004
    403790 5t5h:f (2.54) BS02 rna ? GO:0003735 ... V5B599 27791004
    403791 5t5h:f (2.54) BS03 rna ? GO:0003735 ... V5B599 27791004
    403792 5t5h:f (2.54) BS04 rna ? GO:0003735 ... V5B599 27791004
    403793 5t5h:g (2.54) BS01 rna ? GO:0003723 ... Q4DIC9 27791004
    403794 5t5h:g (2.54) BS02 rna ? GO:0003723 ... Q4DIC9 27791004
    403795 5t5h:h (2.54) BS01 rna ? GO:0002181 ... V5C333 27791004
    403796 5t5h:h (2.54) BS02 rna ? GO:0002181 ... V5C333 27791004
    403797 5t5h:h (2.54) BS03 rna ? GO:0002181 ... V5C333 27791004
    403798 5t5h:h (2.54) BS04 rna ? GO:0002181 ... V5C333 27791004
    403799 5t5h:i (2.54) BS01 rna ? GO:0003735 ... Q4D1H8 27791004
    403800 5t5h:j (2.54) BS01 rna ? GO:0003735 ... Q4DB26 27791004

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).