SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    403801 5t5h:j (2.54) BS02 rna ? GO:0003735 ... Q4DB26 27791004
    403802 5t5h:j (2.54) BS03 rna ? GO:0003735 ... Q4DB26 27791004
    403803 5t5h:k (2.54) BS01 rna ? GO:0000463 ... Q4E2E0 27791004
    403804 5t5h:k (2.54) BS02 rna ? GO:0000463 ... Q4E2E0 27791004
    403805 5t5h:l (2.54) BS01 rna ? GO:0003735 ... Q4E581 27791004
    403806 5t5h:l (2.54) BS02 rna ? GO:0003735 ... Q4E581 27791004
    403807 5t5h:l (2.54) BS03 rna ? GO:0003735 ... Q4E581 27791004
    403808 5t5h:m (2.54) BS01 rna ? GO:0003735 ... V5BDJ2 27791004
    403809 5t5h:m (2.54) BS02 rna ? GO:0003735 ... V5BDJ2 27791004
    403810 5t5h:n (2.54) BS01 rna ? GO:0003723 ... Q4DXW6 27791004
    403811 5t5h:n (2.54) BS02 rna ? GO:0003723 ... Q4DXW6 27791004
    403812 5t5h:n (2.54) BS03 rna ? GO:0003723 ... Q4DXW6 27791004
    403813 5t5h:n (2.54) BS04 ZN ? GO:0003723 ... Q4DXW6 27791004
    403814 5t5h:o (2.54) BS01 rna ? GO:0003735 ... Q4DAV9 27791004
    403815 5t5h:o (2.54) BS02 rna ? GO:0003735 ... Q4DAV9 27791004
    403816 5t5h:o (2.54) BS03 rna ? GO:0003735 ... Q4DAV9 27791004
    403817 5t5h:o (2.54) BS04 ZN ? GO:0003735 ... Q4DAV9 27791004
    403818 5t5h:p (2.54) BS01 rna ? GO:0003735 ... Q4DQ60 27791004
    403819 5t5h:p (2.54) BS02 rna ? GO:0003735 ... Q4DQ60 27791004
    403820 5t5h:p (2.54) BS03 rna ? GO:0003735 ... Q4DQ60 27791004
    403821 5t5h:q (2.54) BS01 rna ? GO:0003735 ... Q4DVC6 27791004
    403822 5t5h:q (2.54) BS02 rna ? GO:0003735 ... Q4DVC6 27791004
    403823 5t5h:q (2.54) BS03 rna ? GO:0003735 ... Q4DVC6 27791004
    403824 5t5h:r (2.54) BS01 rna ? GO:0003735 ... Q4CQW2 27791004
    403825 5t5h:r (2.54) BS02 rna ? GO:0003735 ... Q4CQW2 27791004
    403826 5t5h:r (2.54) BS03 rna ? GO:0003735 ... Q4CQW2 27791004
    403827 5t5h:t (2.54) BS01 rna ? GO:0003735 ... Q4CV79 27791004
    403828 5t5h:t (2.54) BS02 rna ? GO:0003735 ... Q4CV79 27791004
    403829 5t5h:t (2.54) BS03 ZN ? GO:0003735 ... Q4CV79 27791004
    403830 5t5h:u (2.54) BS01 rna ? GO:0003735 ... Q4CU61 27791004
    403831 5t5h:u (2.54) BS02 rna ? GO:0003735 ... Q4CU61 27791004
    403832 5t5h:u (2.54) BS03 rna ? GO:0003735 ... Q4CU61 27791004
    403833 5t5h:v (2.54) BS01 rna ? GO:0003735 ... Q4DIV9 27791004
    403834 5t5h:v (2.54) BS02 rna ? GO:0003735 ... Q4DIV9 27791004
    403835 5t5h:w (2.54) BS01 rna ? GO:0000463 ... Q4DNZ7 27791004
    403836 5t5h:w (2.54) BS02 rna ? GO:0000463 ... Q4DNZ7 27791004
    403837 5t5h:x (2.54) BS01 rna ? GO:0003723 ... Q9BMP0 27791004
    403838 5t5h:x (2.54) BS02 rna ? GO:0003723 ... Q9BMP0 27791004
    403839 5t5h:x (2.54) BS03 rna ? GO:0003723 ... Q9BMP0 27791004
    403840 5t5i:A (1.9) BS01 ZN ? GO:0016787 ... O74030 27846502
    403841 5t5i:A (1.9) BS02 ZN ? GO:0016787 ... O74030 27846502
    403842 5t5i:A (1.9) BS03 MG ? GO:0016787 ... O74030 27846502
    403843 5t5i:B (1.9) BS01 SF4 ? GO:0003954 ... T2GJQ6 27846502
    403844 5t5i:B (1.9) BS02 MGD ? GO:0003954 ... T2GJQ6 27846502
    403845 5t5i:B (1.9) BS03 MGD ? GO:0003954 ... T2GJQ6 27846502
    403846 5t5i:C (1.9) BS01 CA 1.2.7.12 GO:0015948 ... O74031 27846502
    403847 5t5i:D (1.9) BS01 MGD ? GO:0016491 ... O74029 27846502
    403848 5t5i:D (1.9) BS02 MGD ? GO:0016491 ... O74029 27846502
    403849 5t5i:F (1.9) BS01 SF4 ? GO:0016491 ... O74028 27846502
    403850 5t5i:F (1.9) BS02 SF4 ? GO:0016491 ... O74028 27846502
    403851 5t5i:F (1.9) BS03 SF4 ? GO:0016491 ... O74028 27846502
    403852 5t5i:F (1.9) BS04 SF4 ? GO:0016491 ... O74028 27846502
    403853 5t5i:F (1.9) BS05 SF4 ? GO:0016491 ... O74028 27846502
    403854 5t5i:F (1.9) BS06 SF4 ? GO:0016491 ... O74028 27846502
    403855 5t5i:F (1.9) BS07 SF4 ? GO:0016491 ... O74028 27846502
    403856 5t5i:F (1.9) BS08 SF4 ? GO:0016491 ... O74028 27846502
    403857 5t5i:G (1.9) BS01 SF4 ? GO:0016491 ... Q1MVD4 27846502
    403858 5t5i:G (1.9) BS02 SF4 ? GO:0016491 ... Q1MVD4 27846502
    403859 5t5i:I (1.9) BS01 ZN ? GO:0016787 ... O74030 27846502
    403860 5t5i:I (1.9) BS02 ZN ? GO:0016787 ... O74030 27846502
    403861 5t5i:I (1.9) BS03 MG ? GO:0016787 ... O74030 27846502
    403862 5t5i:J (1.9) BS01 SF4 ? GO:0003954 ... T2GJQ6 27846502
    403863 5t5i:J (1.9) BS02 MGD ? GO:0003954 ... T2GJQ6 27846502
    403864 5t5i:J (1.9) BS03 MGD ? GO:0003954 ... T2GJQ6 27846502
    403865 5t5i:K (1.9) BS01 CA 1.2.7.12 GO:0015948 ... O74031 27846502
    403866 5t5i:L (1.9) BS01 MGD ? GO:0016491 ... O74029 27846502
    403867 5t5i:L (1.9) BS02 MGD ? GO:0016491 ... O74029 27846502
    403868 5t5i:N (1.9) BS01 SF4 ? GO:0016491 ... O74028 27846502
    403869 5t5i:N (1.9) BS02 SF4 ? GO:0016491 ... O74028 27846502
    403870 5t5i:N (1.9) BS03 SF4 ? GO:0016491 ... O74028 27846502
    403871 5t5i:N (1.9) BS04 SF4 ? GO:0016491 ... O74028 27846502
    403872 5t5i:N (1.9) BS05 SF4 ? GO:0016491 ... O74028 27846502
    403873 5t5i:N (1.9) BS06 SF4 ? GO:0016491 ... O74028 27846502
    403874 5t5i:N (1.9) BS07 SF4 ? GO:0016491 ... O74028 27846502
    403875 5t5i:N (1.9) BS08 SF4 ? GO:0016491 ... O74028 27846502
    403876 5t5i:P (1.9) BS01 SF4 ? GO:0016491 ... Q1MVD4 27846502
    403877 5t5i:P (1.9) BS02 SF4 ? GO:0016491 ... Q1MVD4 27846502
    403878 5t5j:A (1.35) BS01 peptide ? GO:0005576 ... P86993 27973758
    403879 5t5j:A (1.35) BS02 CA ? GO:0005576 ... P86993 27973758
    403880 5t5j:A (1.35) BS03 CA ? GO:0005576 ... P86993 27973758
    403881 5t5j:B (1.35) BS01 CA ? GO:0005576 ... P86993 27973758
    403882 5t5j:B (1.35) BS02 CA ? GO:0005576 ... P86993 27973758
    403883 5t5k:A (4.0) BS01 dna ? GO:0003677 ... P19267 28798133
    403884 5t5k:A (4.0) BS02 dna ? GO:0003677 ... P19267 28798133
    403885 5t5k:B (4.0) BS01 dna ? GO:0003677 ... P19267 28798133
    403886 5t5k:B (4.0) BS02 dna ? GO:0003677 ... P19267 28798133
    403887 5t5k:C (4.0) BS01 dna ? GO:0003677 ... P19267 28798133
    403888 5t5k:C (4.0) BS02 dna ? GO:0003677 ... P19267 28798133
    403889 5t5k:D (4.0) BS01 dna ? GO:0003677 ... P19267 28798133
    403890 5t5k:D (4.0) BS02 dna ? GO:0003677 ... P19267 28798133
    403891 5t5k:E (4.0) BS01 dna ? GO:0003677 ... P19267 28798133
    403892 5t5k:E (4.0) BS02 dna ? GO:0003677 ... P19267 28798133
    403893 5t5k:F (4.0) BS01 dna ? GO:0003677 ... P19267 28798133
    403894 5t5k:F (4.0) BS02 dna ? GO:0003677 ... P19267 28798133
    403895 5t5l:A (1.17) BS01 CA ? GO:0005576 ... P86993 27973758
    403896 5t5l:A (1.17) BS02 CA ? GO:0005576 ... P86993 27973758
    403897 5t5l:B (1.17) BS01 CA ? GO:0005576 ... P86993 27973758
    403898 5t5l:B (1.17) BS02 CA ? GO:0005576 ... P86993 27973758
    403899 5t5m:A (2.5) BS01 ZN 1.2.99.5 GO:0016787 ... O74030 27846502
    403900 5t5m:A (2.5) BS02 ZN 1.2.99.5 GO:0016787 ... O74030 27846502
    403901 5t5m:A (2.5) BS03 MG 1.2.99.5 GO:0016787 ... O74030 27846502
    403902 5t5m:B (2.5) BS01 SF4 1.2.99.5 GO:0003954 ... O74032 27846502
    403903 5t5m:B (2.5) BS02 MGD 1.2.99.5 GO:0003954 ... O74032 27846502
    403904 5t5m:B (2.5) BS03 MGD 1.2.99.5 GO:0003954 ... O74032 27846502
    403905 5t5m:C (2.5) BS01 MG 1.2.7.12 GO:0015948 ... O74031 27846502
    403906 5t5m:D (2.5) BS01 MGD 1.2.99.5 GO:0016491 ... O74029 27846502
    403907 5t5m:D (2.5) BS02 MGD 1.2.99.5 GO:0016491 ... O74029 27846502
    403908 5t5m:F (2.5) BS01 SF4 ? GO:0016491 ... O74028 27846502
    403909 5t5m:F (2.5) BS02 SF4 ? GO:0016491 ... O74028 27846502
    403910 5t5m:F (2.5) BS03 SF4 ? GO:0016491 ... O74028 27846502
    403911 5t5m:F (2.5) BS04 SF4 ? GO:0016491 ... O74028 27846502
    403912 5t5m:F (2.5) BS05 SF4 ? GO:0016491 ... O74028 27846502
    403913 5t5m:F (2.5) BS06 SF4 ? GO:0016491 ... O74028 27846502
    403914 5t5m:F (2.5) BS07 SF4 ? GO:0016491 ... O74028 27846502
    403915 5t5m:F (2.5) BS08 SF4 ? GO:0016491 ... O74028 27846502
    403916 5t5m:G (2.5) BS01 SF4 ? GO:0016491 ... Q1MVD4 27846502
    403917 5t5m:G (2.5) BS02 SF4 ? GO:0016491 ... Q1MVD4 27846502
    403918 5t5n:A (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    403919 5t5n:A (3.1) BS02 CL N/A GO:0005254 ... N/A 27821745
    403920 5t5n:A (3.1) BS03 CA N/A GO:0005254 ... N/A 27821745
    403921 5t5n:A (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    403922 5t5n:B (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    403923 5t5n:B (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    403924 5t5n:B (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    403925 5t5n:B (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    403926 5t5n:C (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    403927 5t5n:C (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    403928 5t5n:C (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    403929 5t5n:C (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    403930 5t5n:D (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    403931 5t5n:D (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    403932 5t5n:D (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    403933 5t5n:D (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    403934 5t5n:E (3.1) BS01 CA N/A GO:0005254 ... N/A 27821745
    403935 5t5n:E (3.1) BS02 CL N/A GO:0005254 ... N/A 27821745
    403936 5t5n:E (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    403937 5t5o:A (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403938 5t5o:A (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    403939 5t5o:A (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403940 5t5o:B (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403941 5t5o:B (2.75) BS02 peptide ? GO:0005576 ... P86993 27973758
    403942 5t5o:B (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403943 5t5o:B (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    403944 5t5o:C (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403945 5t5o:C (2.75) BS02 peptide ? GO:0005576 ... P86993 27973758
    403946 5t5o:C (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403947 5t5o:C (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    403948 5t5o:D (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403949 5t5o:D (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    403950 5t5o:D (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403951 5t5o:E (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403952 5t5o:E (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    403953 5t5o:E (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403954 5t5o:F (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403955 5t5o:F (2.75) BS02 peptide ? GO:0005576 ... P86993 27973758
    403956 5t5o:F (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403957 5t5o:F (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    403958 5t5o:G (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403959 5t5o:G (2.75) BS02 peptide ? GO:0005576 ... P86993 27973758
    403960 5t5o:G (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403961 5t5o:G (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    403962 5t5o:H (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403963 5t5o:H (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    403964 5t5o:H (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403965 5t5o:I (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403966 5t5o:I (2.75) BS02 peptide ? GO:0005576 ... P86993 27973758
    403967 5t5o:I (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403968 5t5o:I (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    403969 5t5o:J (2.75) BS01 peptide ? GO:0005576 ... P86993 27973758
    403970 5t5o:J (2.75) BS02 peptide ? GO:0005576 ... P86993 27973758
    403971 5t5o:J (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    403972 5t5o:J (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    403973 5t5p:A (1.66) BS01 peptide ? GO:0005576 ... P86993 27973758
    403974 5t5p:A (1.66) BS02 CA ? GO:0005576 ... P86993 27973758
    403975 5t5p:A (1.66) BS03 CA ? GO:0005576 ... P86993 27973758
    403976 5t5p:B (1.66) BS01 peptide ? GO:0005576 ... P86993 27973758
    403977 5t5p:B (1.66) BS02 CA ? GO:0005576 ... P86993 27973758
    403978 5t5p:B (1.66) BS03 CA ? GO:0005576 ... P86993 27973758
    403979 5t5q:A (1.95) BS01 NAD 1.1.1.100 GO:0000166 ... Q2YL80 N/A
    403980 5t5q:B (1.95) BS01 NAD 1.1.1.100 GO:0000166 ... Q2YL80 N/A
    403981 5t5q:C (1.95) BS01 NAD 1.1.1.100 GO:0000166 ... Q2YL80 N/A
    403982 5t5q:D (1.95) BS01 NAD 1.1.1.100 GO:0000166 ... Q2YL80 N/A
    403983 5t5t:A (3.46) BS01 STU 2.7.11.1
    2.7.11.26
    2.7.11.31
    GO:0004672 ... P54645 28289077
    403984 5t5t:A (3.46) BS02 75O 2.7.11.1
    2.7.11.26
    2.7.11.31
    GO:0004672 ... P54645 28289077
    403985 5t5t:B (3.46) BS01 75O ? N/A P80386 28289077
    403986 5t5t:C (3.46) BS01 AMP ? GO:0004679 ... P80385 28289077
    403987 5t5t:C (3.46) BS02 AMP ? GO:0004679 ... P80385 28289077
    403988 5t5t:C (3.46) BS03 ADP ? GO:0004679 ... P80385 28289077
    403989 5t5u:A (1.8) BS01 MYA 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    403990 5t5u:A (1.8) BS02 75T 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    403991 5t5v:A (1.8) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    403992 5t5v:B (1.8) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    403993 5t61:A (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    403994 5t61:A (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    403995 5t61:A (2.55) BS03 MFN N/A GO:0016810 ... N/A 27846502
    403996 5t61:B (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    403997 5t61:B (2.55) BS02 MGD N/A GO:0015948 ... N/A 27846502
    403998 5t61:B (2.55) BS03 MGD N/A GO:0015948 ... N/A 27846502
    403999 5t61:C (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    404000 5t61:D (2.55) BS01 MGD N/A GO:0016491 ... N/A 27846502

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).