SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    404201 5t62:q (3.3) BS01 rna ? GO:0002181 ... P0C2H8 28179369
    404202 5t62:r (3.3) BS01 rna ? GO:0002181 ... P38061 28179369
    404203 5t62:s (3.3) BS01 rna ? GO:0000027 ... P05744 28179369
    404204 5t62:t (3.3) BS01 rna ? GO:0002181 ... P87262 28179369
    404205 5t62:u (3.3) BS01 rna ? GO:0000463 ... P0CX84 28179369
    404206 5t62:u (3.3) BS02 rna ? GO:0000463 ... P0CX84 28179369
    404207 5t62:v (3.3) BS01 rna ? GO:0002181 ... P05745 28179369
    404208 5t62:w (3.3) BS01 rna ? GO:0000448 ... P49166 28179369
    404209 5t62:w (3.3) BS02 rna ? GO:0000448 ... P49166 28179369
    404210 5t62:x (3.3) BS01 rna ? GO:0002181 ... P49167 28179369
    404211 5t62:y (3.3) BS01 rna ? GO:0002181 ... P04650 28179369
    404212 5t62:y (3.3) BS02 rna ? GO:0002181 ... P04650 28179369
    404213 5t62:z (3.3) BS01 rna ? GO:0000027 ... P0CH08 28179369
    404214 5t63:A (2.5) BS01 peptide ? GO:0004252 ... P72780 27956128
    404215 5t64:A (1.7) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404216 5t64:A (1.7) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404217 5t64:A (1.7) BS03 TMP ? GO:0016740 ... B3TMQ9 27595766
    404218 5t64:B (1.7) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404219 5t64:B (1.7) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404220 5t64:B (1.7) BS03 TMP ? GO:0016740 ... B3TMQ9 27595766
    404221 5t65:A (2.2) BS01 ILE ? N/A G3XD24 N/A
    404222 5t65:B (2.2) BS01 ILE ? N/A G3XD24 N/A
    404223 5t66:A (1.951) BS01 C6S 3.5.2.6 GO:0008800 ... G3G192 28115348
    404224 5t66:B (1.951) BS01 C6S 3.5.2.6 GO:0008800 ... G3G192 28115348
    404225 5t67:A (1.6) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404226 5t67:A (1.6) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404227 5t67:A (1.6) BS03 JHZ ? GO:0016740 ... B3TMQ9 27595766
    404228 5t67:B (1.6) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404229 5t67:B (1.6) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404230 5t67:B (1.6) BS03 JHZ ? GO:0016740 ... B3TMQ9 27595766
    404231 5t68:A (2.93) BS01 77V 2.7.10.2 GO:0004672 ... P43405 27789138 BindingDB: IC50=23nM, EC50=34nM
    404232 5t68:B (2.93) BS01 77V 2.7.10.2 GO:0004672 ... P43405 27789138 BindingDB: IC50=23nM, EC50=34nM
    404233 5t6a:A (2.05) BS01 5GA ? GO:0004672 ... Q9BJF5 N/A
    404234 5t6b:A (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404235 5t6b:A (2.0) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404236 5t6b:A (2.0) BS03 TMP ? GO:0016740 ... B3TMQ9 27595766
    404237 5t6b:B (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404238 5t6b:B (2.0) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404239 5t6b:B (2.0) BS03 TMP ? GO:0016740 ... B3TMQ9 27595766
    404240 5t6b:C (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404241 5t6b:C (2.0) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404242 5t6b:C (2.0) BS03 TMP ? GO:0016740 ... B3TMQ9 27595766
    404243 5t6b:D (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    404244 5t6b:D (2.0) BS02 SAH ? GO:0016740 ... B3TMQ9 27595766
    404245 5t6b:D (2.0) BS03 TMP ? GO:0016740 ... B3TMQ9 27595766
    404246 5t6c:A (1.9) BS01 MYA 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    404247 5t6c:A (1.9) BS02 75S 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    404248 5t6d:A (2.1) BS01 N38 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 27914364
    404249 5t6d:B (2.1) BS01 N38 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 27914364
    404250 5t6e:A (2.3) BS01 MYA 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    404251 5t6e:A (2.3) BS02 75R 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    404252 5t6f:A (1.9) BS01 N38 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 27914364
    404253 5t6f:B (1.9) BS01 N38 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 27914364
    404254 5t6g:A (2.45) BS01 N40 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 27914364
    404255 5t6g:B (2.45) BS01 N40 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 27914364
    404256 5t6h:A (1.8) BS01 MYA 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    404257 5t6h:A (1.8) BS02 75Q 2.3.1.97 GO:0004379 ... Q9UVX3 29125744
    404258 5t6i:A (2.05) BS01 5GB ? GO:0004672 ... Q9BJF5 N/A
    404259 5t6j:A (1.752) BS01 peptide ? N/A Q04477 27881300
    404260 5t6j:B (1.752) BS01 peptide ? N/A P40014 27881300
    404261 5t6k:A (2.4) BS01 5G9 ? GO:0004672 ... Q9BJF5 N/A
    404262 5t6m:A (1.8) BS01 PO4 4.2.1.20 GO:0000162 ... Q8U093 27935677
    404263 5t6m:B (1.8) BS01 78U 4.2.1.20 GO:0000162 ... Q8U093 27935677
    404264 5t6m:C (1.8) BS01 78U 4.2.1.20 GO:0000162 ... Q8U093 27935677
    404265 5t6m:D (1.8) BS01 PO4 4.2.1.20 GO:0000162 ... Q8U093 27935677
    404266 5t6m:D (1.8) BS02 78U 4.2.1.20 GO:0000162 ... Q8U093 27935677
    404267 5t6n:A (2.541) BS01 75U ? GO:0019031 ... Q91MA7 28003465
    404268 5t6n:A (2.541) BS02 75U ? GO:0019031 ... Q91MA7 28003465
    404269 5t6n:B (2.541) BS01 75U ? GO:0019031 ... P03436 28003465
    404270 5t6n:C (2.541) BS01 75U ? GO:0019031 ... Q91MA7 28003465
    404271 5t6n:D (2.541) BS01 75U ? GO:0019031 ... P03436 28003465
    404272 5t6n:D (2.541) BS02 75U ? GO:0019031 ... P03436 28003465
    404273 5t6n:E (2.541) BS01 75U ? GO:0019031 ... Q91MA7 28003465
    404274 5t6n:E (2.541) BS02 75U ? GO:0019031 ... Q91MA7 28003465
    404275 5t6n:F (2.541) BS01 75U ? GO:0019031 ... P03436 28003465
    404276 5t6p:A (1.97) BS01 peptide N/A N/A N/A 28025250
    404277 5t6p:B (1.97) BS01 peptide N/A N/A N/A 28025250
    404278 5t6p:C (1.97) BS01 peptide N/A N/A N/A 28025250
    404279 5t6p:D (1.97) BS01 peptide N/A N/A N/A 28025250
    404280 5t6q:A (2.701) BS01 HEM 1.14.14.1 GO:0004497 ... P15128 28167536
    404281 5t6r:D (4.2) BS01 rna ? GO:0002181 ... P0CX45 28179369
    404282 5t6r:E (4.2) BS01 rna ? GO:0000027 ... P14126 28179369
    404283 5t6r:F (4.2) BS01 rna ? GO:0002181 ... P10664 28179369
    404284 5t6r:F (4.2) BS02 rna ? GO:0002181 ... P10664 28179369
    404285 5t6r:G (4.2) BS01 rna ? GO:0000027 ... P26321 28179369
    404286 5t6r:G (4.2) BS02 rna ? GO:0000027 ... P26321 28179369
    404287 5t6r:H (4.2) BS01 rna ? GO:0000027 ... Q02326 28179369
    404288 5t6r:I (4.2) BS01 rna ? GO:0000463 ... P05737 28179369
    404289 5t6r:I (4.2) BS02 rna ? GO:0000463 ... P05737 28179369
    404290 5t6r:J (4.2) BS01 rna ? GO:0000470 ... P17076 28179369
    404291 5t6r:J (4.2) BS02 rna ? GO:0000470 ... P17076 28179369
    404292 5t6r:K (4.2) BS01 rna ? GO:0002181 ... P05738 28179369
    404293 5t6r:L (4.2) BS01 rna ? GO:0000027 ... P41805 28179369
    404294 5t6r:L (4.2) BS02 rna ? GO:0000027 ... P41805 28179369
    404295 5t6r:M (4.2) BS01 rna ? GO:0000027 ... P0C0W9 28179369
    404296 5t6r:M (4.2) BS02 rna ? GO:0000027 ... P0C0W9 28179369
    404297 5t6r:N (4.2) BS01 rna ? GO:0002181 ... Q12690 28179369
    404298 5t6r:O (4.2) BS01 rna ? GO:0000027 ... P36105 28179369
    404299 5t6r:Q (4.2) BS01 rna ? GO:0002181 ... P0CX27 28179369
    404300 5t6r:R (4.2) BS01 rna ? GO:0002181 ... P0CX25 28179369
    404301 5t6r:S (4.2) BS01 rna N/A N/A N/A 28179369
    404302 5t6r:V (4.2) BS01 rna ? GO:0000055 ... A0A0F8NYV9
    P38861
    28179369
    404303 5t6r:a (4.2) BS01 rna ? GO:0002181 ... P05748 28179369
    404304 5t6r:a (4.2) BS02 rna ? GO:0002181 ... P05748 28179369
    404305 5t6r:b (4.2) BS01 rna ? GO:0000470 ... P26784 28179369
    404306 5t6r:c (4.2) BS01 rna ? GO:0000448 ... P05740 28179369
    404307 5t6r:c (4.2) BS02 rna ? GO:0000448 ... P05740 28179369
    404308 5t6r:d (4.2) BS01 rna ? GO:0002181 ... P0CX49 28179369
    404309 5t6r:e (4.2) BS01 rna ? GO:0002181 ... P0CX82 28179369
    404310 5t6r:f (4.2) BS01 rna ? GO:0002181 ... P0CX23 28179369
    404311 5t6r:f (4.2) BS02 rna ? GO:0002181 ... P0CX23 28179369
    404312 5t6r:g (4.2) BS01 rna ? GO:0002181 ... Q02753 28179369
    404313 5t6r:g (4.2) BS02 rna ? GO:0002181 ... Q02753 28179369
    404314 5t6r:h (4.2) BS01 rna ? GO:0002181 ... P05749 28179369
    404315 5t6r:i (4.2) BS01 rna ? GO:0002181 ... P0CX41 28179369
    404316 5t6r:j (4.2) BS01 rna ? GO:0002181 ... P04449 28179369
    404317 5t6r:k (4.2) BS01 rna ? GO:0000027 ... P04456 28179369
    404318 5t6r:k (4.2) BS02 rna ? GO:0000027 ... P04456 28179369
    404319 5t6r:l (4.2) BS01 rna ? GO:0002181 ... P05743 28179369
    404320 5t6r:l (4.2) BS02 rna ? GO:0002181 ... P05743 28179369
    404321 5t6r:m (4.2) BS01 rna ? GO:0002181 ... P0C2H6 28179369
    404322 5t6r:n (4.2) BS01 rna ? GO:0002181 ... P02406 28179369
    404323 5t6r:o (4.2) BS01 rna ? GO:0002181 ... P05747 28179369
    404324 5t6r:p (4.2) BS01 rna ? GO:0002181 ... P14120 28179369
    404325 5t6r:q (4.2) BS01 rna ? GO:0002181 ... P0C2H8 28179369
    404326 5t6r:r (4.2) BS01 rna ? GO:0002181 ... P38061 28179369
    404327 5t6r:s (4.2) BS01 rna ? GO:0000027 ... P05744 28179369
    404328 5t6r:t (4.2) BS01 rna ? GO:0002181 ... P87262 28179369
    404329 5t6r:u (4.2) BS01 rna ? GO:0000463 ... P0CX84 28179369
    404330 5t6r:u (4.2) BS02 rna ? GO:0000463 ... P0CX84 28179369
    404331 5t6r:v (4.2) BS01 rna ? GO:0002181 ... P05745 28179369
    404332 5t6r:w (4.2) BS01 rna ? GO:0000448 ... P49166 28179369
    404333 5t6r:w (4.2) BS02 rna ? GO:0000448 ... P49166 28179369
    404334 5t6r:x (4.2) BS01 rna ? GO:0002181 ... P49167 28179369
    404335 5t6r:y (4.2) BS01 rna ? GO:0002181 ... P04650 28179369
    404336 5t6r:y (4.2) BS02 rna ? GO:0002181 ... P04650 28179369
    404337 5t6r:z (4.2) BS01 rna ? GO:0000027 ... P0CH08 28179369
    404338 5t6s:A (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404339 5t6s:B (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404340 5t6s:B (2.36) BS02 75U ? GO:0019031 ... R4NN21 28003465
    404341 5t6s:C (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404342 5t6s:D (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404343 5t6s:D (2.36) BS02 75U ? GO:0019031 ... R4NN21 28003465
    404344 5t6s:E (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404345 5t6s:F (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404346 5t6s:F (2.36) BS02 75U ? GO:0019031 ... R4NN21 28003465
    404347 5t6s:G (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404348 5t6s:H (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404349 5t6s:H (2.36) BS02 75U ? GO:0019031 ... R4NN21 28003465
    404350 5t6s:I (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404351 5t6s:J (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404352 5t6s:J (2.36) BS02 75U ? GO:0019031 ... R4NN21 28003465
    404353 5t6s:K (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404354 5t6s:L (2.36) BS01 75U ? GO:0019031 ... R4NN21 28003465
    404355 5t6s:L (2.36) BS02 75U ? GO:0019031 ... R4NN21 28003465
    404356 5t6w:A (1.9) BS01 peptide ? N/A P01889 28218747
    404357 5t6x:A (1.686) BS01 peptide ? N/A P01889 28218747
    404358 5t6y:A (1.76) BS01 peptide ? N/A P01889 28218747
    404359 5t6z:A (2.0) BS01 peptide ? N/A P01889 28218747
    404360 5t70:A (2.1) BS01 peptide ? N/A P01889 28218747
    404361 5t71:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404362 5t71:A (1.3) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404363 5t71:A (1.3) BS03 75W 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404364 5t72:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404365 5t72:A (1.3) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404366 5t72:A (1.3) BS03 4WA 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237 BindingDB: Ki=106nM
    404367 5t73:A (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404368 5t73:A (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404369 5t73:B (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404370 5t73:B (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404371 5t73:C (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404372 5t73:C (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404373 5t73:D (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404374 5t73:D (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    404375 5t74:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404376 5t74:A (1.2) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404377 5t74:A (1.2) BS03 75Y 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404378 5t75:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237
    404379 5t75:A (1.5) BS02 4WA 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237 BindingDB: Ki=106nM
    404380 5t75:A (1.5) BS03 4WA 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29357237 BindingDB: Ki=106nM
    404381 5t77:A (2.0) BS01 ZN ? GO:0005886 ... B7IE18 28024149
    404382 5t77:A (2.0) BS02 CA ? GO:0005886 ... B7IE18 28024149
    404383 5t78:A (2.2) BS01 peptide N/A N/A N/A 28025250
    404384 5t78:B (2.2) BS01 peptide N/A N/A N/A 28025250
    404385 5t78:C (2.2) BS01 peptide N/A N/A N/A 28025250
    404386 5t78:D (2.2) BS01 peptide N/A N/A N/A 28025250
    404387 5t79:A (1.86) BS01 NDP ? GO:0000166 ... Q8ZNA1 28130301
    404388 5t7b:A (2.529) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 N/A
    404389 5t7d:A (1.4) BS01 ACO 2.3.1.183 GO:0009635 ... P16426 29180815
    404390 5t7d:B (1.4) BS01 ACO 2.3.1.183 GO:0009635 ... P16426 29180815
    404391 5t7d:C (1.4) BS01 ACO 2.3.1.183 GO:0009635 ... P16426 29180815
    404392 5t7d:D (1.4) BS01 ACO 2.3.1.183 GO:0009635 ... P16426 29180815
    404393 5t7e:A (1.8) BS01 COA 2.3.1.183 GO:0009635 ... P16426 29180815
    404394 5t7e:A (1.8) BS02 PPQ 2.3.1.183 GO:0009635 ... P16426 29180815
    404395 5t7e:B (1.8) BS01 COA 2.3.1.183 GO:0009635 ... P16426 29180815
    404396 5t7e:B (1.8) BS02 PPQ 2.3.1.183 GO:0009635 ... P16426 29180815
    404397 5t7e:B (1.8) BS03 PPQ 2.3.1.183 GO:0009635 ... P16426 29180815
    404398 5t7e:C (1.8) BS01 COA 2.3.1.183 GO:0009635 ... P16426 29180815
    404399 5t7e:C (1.8) BS02 PPQ 2.3.1.183 GO:0009635 ... P16426 29180815
    404400 5t7e:D (1.8) BS01 PPQ 2.3.1.183 GO:0009635 ... P16426 29180815

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).