SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    404401 5t7e:D (1.8) BS02 COA 2.3.1.183 GO:0009635 ... P16426 29180815
    404402 5t7e:D (1.8) BS03 PPQ 2.3.1.183 GO:0009635 ... P16426 29180815
    404403 5t7f:A (2.6) BS01 76C 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 N/A
    404404 5t7f:B (2.6) BS01 76C 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 N/A
    404405 5t7g:A (1.961) BS01 peptide ? N/A P01900 29374075
    404406 5t7g:C (1.961) BS01 peptide ? N/A P01900 29374075
    404407 5t7h:A (2.003) BS01 ZE7 ? GO:0005515 ... P00044 27990813
    404408 5t7h:A (2.003) BS02 HEC ? GO:0005515 ... P00044 27990813
    404409 5t7h:A (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    404410 5t7h:B (2.003) BS01 ZE7 ? GO:0005515 ... P00044 27990813
    404411 5t7h:B (2.003) BS02 HEC ? GO:0005515 ... P00044 27990813
    404412 5t7h:B (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    404413 5t7h:C (2.003) BS01 HEC ? GO:0005515 ... P00044 27990813
    404414 5t7h:C (2.003) BS02 ZE7 ? GO:0005515 ... P00044 27990813
    404415 5t7h:C (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    404416 5t7h:D (2.003) BS01 HEC ? GO:0005515 ... P00044 27990813
    404417 5t7h:D (2.003) BS02 ZE7 ? GO:0005515 ... P00044 27990813
    404418 5t7h:D (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    404419 5t7i:A (2.0) BS01 BGC ? GO:0030246 ... O00214 28000747
    404420 5t7i:A (2.0) BS02 GAL ? GO:0030246 ... O00214 28000747
    404421 5t7i:A (2.0) BS03 GAL ? GO:0030246 ... O00214 28000747
    404422 5t7j:A (1.65) BS01 ZN ? N/A Q2U8Y3 28045386
    404423 5t7j:A (1.65) BS02 ZN ? N/A Q2U8Y3 28045386
    404424 5t7j:A (1.65) BS03 ZN ? N/A Q2U8Y3 28045386
    404425 5t7j:A (1.65) BS04 ZN ? N/A Q2U8Y3 28045386
    404426 5t7j:A (1.65) BS05 ZN ? N/A Q2U8Y3 28045386
    404427 5t7k:A (1.3) BS01 ZN ? N/A Q2U8Y3 28045386
    404428 5t7k:A (1.3) BS02 ZN ? N/A Q2U8Y3 28045386
    404429 5t7l:A (2.83) BS01 PT ? GO:0005507 ... O00244 31283225
    404430 5t7l:B (2.83) BS01 CU 7.2.2.8 GO:0005507 ... Q04656 31283225
    404431 5t7m:A (2.25) BS01 TRP ? N/A G3XD24 N/A
    404432 5t7m:B (2.25) BS01 TRP ? N/A G3XD24 N/A
    404433 5t7n:A (1.6) BS01 GLC ? N/A Q2U8Y3 28045386
    404434 5t7n:A (1.6) BS02 ZN ? N/A Q2U8Y3 28045386
    404435 5t7n:A (1.6) BS03 ZN ? N/A Q2U8Y3 28045386
    404436 5t7n:A (1.6) BS04 ZN ? N/A Q2U8Y3 28045386
    404437 5t7o:A (1.8) BS01 NAP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404438 5t7o:A (1.8) BS02 THG 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404439 5t7o:A (1.8) BS03 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404440 5t7o:B (1.8) BS01 THG 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404441 5t7o:B (1.8) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404442 5t7o:B (1.8) BS03 NAP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404443 5t7o:C (1.8) BS01 THG 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404444 5t7o:C (1.8) BS02 NAP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404445 5t7o:C (1.8) BS03 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404446 5t7o:D (1.8) BS01 NAP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404447 5t7o:D (1.8) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404448 5t7o:D (1.8) BS03 THG 1.5.1.3
    2.1.1.45
    GO:0000166 ... Q4DLS1 N/A
    404449 5t7p:A (2.16) BS01 MN ? GO:0005537 ... P02867 28754321
    404450 5t7p:A (2.16) BS02 CA ? GO:0005537 ... P02867 28754321
    404451 5t7p:A (2.16) BS03 XMM ? GO:0005537 ... P02867 28754321
    404452 5t7p:B (2.16) BS01 MN ? GO:0005537 ... P02867 28754321
    404453 5t7p:B (2.16) BS02 CA ? GO:0005537 ... P02867 28754321
    404454 5t7p:B (2.16) BS03 XMM ? GO:0005537 ... P02867 28754321
    404455 5t7s:A (1.9) BS01 GLC ? GO:0030246 ... O00214 28000747
    404456 5t7s:A (1.9) BS02 GAL ? GO:0030246 ... O00214 28000747
    404457 5t7t:A (1.96) BS01 GAL ? GO:0030246 ... O00214 28000747
    404458 5t7u:A (1.58) BS01 GOL ? GO:0030246 ... O00214 28000747
    404459 5t7v:L1 (3.6) BS01 rna ? GO:0003735 ... A0A077UVB6 28487427
    404460 5t7v:L1 (3.6) BS02 rna ? GO:0003735 ... A0A077UVB6 28487427
    404461 5t7v:L2 (3.6) BS01 rna ? GO:0002181 ... B3VKN3 28487427
    404462 5t7v:L2 (3.6) BS02 rna ? GO:0002181 ... B3VKN3 28487427
    404463 5t7v:L3 (3.6) BS01 rna ? GO:0000027 ... A0A077VMP6 28487427
    404464 5t7v:L4 (3.6) BS01 rna ? GO:0003723 ... D7URR3 28487427
    404465 5t7v:L5 (3.6) BS01 rna ? GO:0003735 ... A0A077UKF9 28487427
    404466 5t7v:L6 (3.6) BS01 rna ? GO:0003735 ... W8TUB4 28487427
    404467 5t7v:L7 (3.6) BS01 rna ? GO:0003723 ... W8TRD5 28487427
    404468 5t7v:L8 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    404469 5t7v:L9 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    404470 5t7v:LA (3.6) BS01 rna ? GO:0003735 ... A0A077URJ8 28487427
    404471 5t7v:LB (3.6) BS01 rna ? GO:0003735 ... A0A077W1J5 28487427
    404472 5t7v:LC (3.6) BS01 rna ? GO:0003735 ... W8U3W0 28487427
    404473 5t7v:LD (3.6) BS01 rna ? GO:0003735 ... W8UVN7 28487427
    404474 5t7v:LD (3.6) BS02 rna ? GO:0003735 ... W8UVN7 28487427
    404475 5t7v:LE (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    404476 5t7v:LF (3.6) BS01 rna ? GO:0003735 ... A0A077UXT4 28487427
    404477 5t7v:LG (3.6) BS01 rna ? GO:0003735 ... Q2YZB6 28487427
    404478 5t7v:LH (3.6) BS01 rna ? GO:0003735 ... A0A077UL47 28487427
    404479 5t7v:LI (3.6) BS01 rna ? GO:0003735 ... A0A077UGV8 28487427
    404480 5t7v:LJ (3.6) BS01 rna ? GO:0003735 ... W8TRC7 28487427
    404481 5t7v:LL (3.6) BS01 rna ? GO:0002181 ... A0A0U1MRH3 28487427
    404482 5t7v:LM (3.6) BS01 rna ? GO:0003729 ... W8TUE6 28487427
    404483 5t7v:LN (3.6) BS01 rna ? GO:0003735 ... A0A077UUA0 28487427
    404484 5t7v:LN (3.6) BS02 rna ? GO:0003735 ... A0A077UUA0 28487427
    404485 5t7v:LO (3.6) BS01 rna ? GO:0003735 ... A0A077UGA7 28487427
    404486 5t7v:LP (3.6) BS01 rna ? GO:0000049 ... A0A077V4G0 28487427
    404487 5t7v:LP (3.6) BS02 rna ? GO:0000049 ... A0A077V4G0 28487427
    404488 5t7v:LQ (3.6) BS01 rna ? GO:0003735 ... A0A077UG91 28487427
    404489 5t7v:LR (3.6) BS01 rna ? GO:0003735 ... W8TRE0 28487427
    404490 5t7v:LR (3.6) BS02 rna ? GO:0003735 ... W8TRE0 28487427
    404491 5t7v:S1 (3.6) BS01 rna ? GO:0003723 ... A0A0H2K0A0 28487427
    404492 5t7v:S2 (3.6) BS01 rna ? GO:0003735 ... A0A077UKD6 28487427
    404493 5t7v:S3 (3.6) BS01 rna ? GO:0000049 ... W8U1C6 28487427
    404494 5t7v:S6 (3.6) BS01 rna ? GO:0003735 ... W8U6H8 28487427
    404495 5t7v:S6 (3.6) BS02 rna ? GO:0003735 ... W8U6H8 28487427
    404496 5t7v:S7 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    404497 5t7v:S8 (3.6) BS01 rna ? GO:0003735 ... A0A077VLD5 28487427
    404498 5t7v:S9 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    404499 5t7v:SA (3.6) BS01 rna N/A GO:0003723 ... N/A 28487427
    404500 5t7v:SC (3.6) BS01 rna ? GO:0003723 ... W8TVK2 28487427
    404501 5t7v:SD (3.6) BS01 rna ? GO:0003723 ... W8TUC9 28487427
    404502 5t7v:SE (3.6) BS01 rna ? GO:0003735 ... W8TPC6 28487427
    404503 5t7v:SF (3.6) BS01 rna ? GO:0003735 ... W8U8T8 28487427
    404504 5t7x:A (2.35) BS01 dna 3.1.21.- GO:0003677 ... P03211 28077791
    404505 5t7x:A (2.35) BS02 dna 3.1.21.- GO:0003677 ... P03211 28077791
    404506 5t7x:B (2.35) BS01 dna 3.1.21.- GO:0003677 ... P03211 28077791
    404507 5t7x:B (2.35) BS02 dna 3.1.21.- GO:0003677 ... P03211 28077791
    404508 5t85:L (2.373) BS01 44G N/A N/A N/A 28225819
    404509 5t88:A (1.902) BS01 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    404510 5t88:A (1.902) BS02 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    404511 5t88:A (1.902) BS03 PRO 3.4.21.26 GO:0004252 ... Q51714 30786206
    404512 5t88:B (1.902) BS01 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    404513 5t88:B (1.902) BS02 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    404514 5t88:B (1.902) BS03 PRO 3.4.21.26 GO:0004252 ... Q51714 30786206
    404515 5t88:B (1.902) BS04 PRO 3.4.21.26 GO:0004252 ... Q51714 30786206
    404516 5t8d:A (2.15) BS01 dna N/A GO:0004519 ... N/A 28873986
    404517 5t8d:A (2.15) BS02 dna N/A GO:0004519 ... N/A 28873986
    404518 5t8d:A (2.15) BS03 CA N/A GO:0004519 ... N/A 28873986
    404519 5t8d:A (2.15) BS04 CA N/A GO:0004519 ... N/A 28873986
    404520 5t8d:A (2.15) BS05 CA N/A GO:0004519 ... N/A 28873986
    404521 5t8e:A (2.71) BS01 77U ? N/A P10275 28363748 BindingDB: IC50=0.720000nM, EC50=0.190000nM
    404522 5t8f:A (2.91) BS01 799 2.7.1.137
    2.7.1.153
    GO:0001779 ... O00329 28005357 BindingDB: Ki=0.079nM, IC50=<0.700000nM
    404523 5t8g:A (2.04) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    404524 5t8g:A (2.04) BS02 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    404525 5t8g:A (2.04) BS03 4Z0 2.3.3.9 GO:0000287 ... P9WK17 27738104
    404526 5t8h:A (1.85) BS01 478 ? GO:0004190 ... Q7SSI0 28195728
    404527 5t8h:B (1.85) BS01 478 ? GO:0004190 ... Q7SSI0 28195728
    404528 5t8i:A (2.6) BS01 77C 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 N/A
    404529 5t8j:A (2.7) BS01 77T ? N/A P10275 28363748 BindingDB: IC50=1.000000nM, EC50=0.290000nM
    404530 5t8k:A (1.95) BS01 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404531 5t8k:A (1.95) BS02 ADE 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404532 5t8k:A (1.95) BS03 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404533 5t8k:B (1.95) BS01 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404534 5t8k:B (1.95) BS02 ADE 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404535 5t8k:B (1.95) BS03 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404536 5t8k:C (1.95) BS01 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404537 5t8k:C (1.95) BS02 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404538 5t8k:C (1.95) BS03 ADE 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404539 5t8k:D (1.95) BS01 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404540 5t8k:D (1.95) BS02 NAD 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404541 5t8k:D (1.95) BS03 ADE 3.13.2.1 GO:0000166 ... Q5CPH1 N/A
    404542 5t8o:A (2.41) BS01 76Z 2.7.11.25 GO:0004672 ... Q9WUL6 28005357 MOAD: Ki=0.31uM
    404543 5t8o:B (2.41) BS01 76Z 2.7.11.25 GO:0004672 ... Q9WUL6 28005357 MOAD: Ki=0.31uM
    404544 5t8p:A (2.32) BS01 774 2.7.11.25 GO:0004672 ... Q9WUL6 28005357 MOAD: Ki=1.28uM
    404545 5t8p:B (2.32) BS01 774 2.7.11.25 GO:0004672 ... Q9WUL6 28005357 MOAD: Ki=1.28uM
    404546 5t8q:A (2.63) BS01 76Y 2.7.11.25 GO:0004672 ... Q9WUL6 28005357
    404547 5t8q:B (2.63) BS01 76Y 2.7.11.25 GO:0004672 ... Q9WUL6 28005357
    404548 5t8r:A (2.4) BS01 peptide ? N/A Q9UIF9 28341809
    404549 5t8r:A (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    404550 5t8r:A (2.4) BS03 ZN ? N/A Q9UIF9 28341809
    404551 5t8r:B (2.4) BS01 ZN ? N/A Q9UIF9 28341809
    404552 5t8r:B (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    404553 5t8r:C (2.4) BS01 ZN ? N/A Q9UIF9 28341809
    404554 5t8r:C (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    404555 5t8r:D (2.4) BS01 peptide ? N/A Q9UIF9 28341809
    404556 5t8r:D (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    404557 5t8r:D (2.4) BS03 ZN ? N/A Q9UIF9 28341809
    404558 5t8s:A (1.7) BS01 AMP 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404559 5t8s:A (1.7) BS02 POP 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404560 5t8s:A (1.7) BS03 SAM 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404561 5t8s:A (1.7) BS04 3PO 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404562 5t8s:B (1.7) BS01 SAM 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404563 5t8s:B (1.7) BS02 3PO 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404564 5t8t:A (2.1) BS01 AMP 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404565 5t8t:B (2.1) BS01 AMP 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    404566 5t8u:A (2.324) BS01 LPA 6.3.1.20 GO:0009249 ... Q8IEG9 28543853
    404567 5t8u:B (2.324) BS01 LPA 6.3.1.20 GO:0009249 ... Q8IEG9 28543853
    404568 5t8w:A (1.6) BS01 HEC ? GO:0005515 ... P00044 29125201
    404569 5t8w:B (1.6) BS01 HEC ? GO:0005515 ... P00044 29125201
    404570 5t8y:A (2.653) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    404571 5t8y:A (2.653) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    404572 5t8y:A (2.653) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    404573 5t8y:B (2.653) BS01 rna 1.17.99.6 GO:0005737 ... P97030 27638883
    404574 5t8y:B (2.653) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    404575 5t8y:B (2.653) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    404576 5t8y:B (2.653) BS04 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    404577 5t8z:A (1.85) BS01 BB2 3.5.1.88 GO:0006412 ... A0A0H3KPJ9 N/A
    404578 5t8z:A (1.85) BS02 FE2 3.5.1.88 GO:0006412 ... A0A0H3KPJ9 N/A
    404579 5t90:A (2.8) BS01 peptide ? GO:0004888 ... P58154 28361878
    404580 5t90:A (2.8) BS02 peptide ? GO:0004888 ... P58154 28361878
    404581 5t90:B (2.8) BS01 peptide ? GO:0004888 ... P58154 28361878
    404582 5t90:B (2.8) BS02 peptide ? GO:0004888 ... P58154 28361878
    404583 5t90:C (2.8) BS01 peptide ? GO:0004888 ... P58154 28361878
    404584 5t90:C (2.8) BS02 peptide ? GO:0004888 ... P58154 28361878
    404585 5t90:D (2.8) BS01 peptide ? GO:0004888 ... P58154 28361878
    404586 5t90:D (2.8) BS02 peptide ? GO:0004888 ... P58154 28361878
    404587 5t90:E (2.8) BS01 peptide ? GO:0004888 ... P58154 28361878
    404588 5t90:E (2.8) BS02 peptide ? GO:0004888 ... P58154 28361878
    404589 5t91:A (1.53) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    404590 5t92:A (2.22) BS01 77W ? N/A P03372 28296398 MOAD: ic50=16nM
    404591 5t92:B (2.22) BS01 77W ? N/A P03372 28296398 MOAD: ic50=16nM
    404592 5t95:A (1.689) BS01 NAP 1.3.1.13 GO:0000166 ... I1MYY4 28671678
    404593 5t95:A (1.689) BS02 TYR 1.3.1.13 GO:0000166 ... I1MYY4 28671678 MOAD: ic50=5.9mM
    404594 5t95:B (1.689) BS01 NAP 1.3.1.13 GO:0000166 ... I1MYY4 28671678
    404595 5t95:B (1.689) BS02 TYR 1.3.1.13 GO:0000166 ... I1MYY4 28671678 MOAD: ic50=5.9mM
    404596 5t96:A (2.0) BS01 79J ? N/A Q9J0Y0 28320973
    404597 5t96:A (2.0) BS02 79J ? N/A Q9J0Y0 28320973
    404598 5t96:B (2.0) BS01 79J ? N/A Q9J0Y0 28320973
    404599 5t96:B (2.0) BS02 79J ? N/A Q9J0Y0 28320973
    404600 5t96:C (2.0) BS01 79J ? N/A Q9J0Y0 28320973

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).