SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    405201 5tbw:CV (3.0) BS04 OHX ? GO:0002181 ... Q02753 29064494
    405202 5tbw:CW (3.0) BS01 rna ? GO:0003735 ... P05749 29064494
    405203 5tbw:CX (3.0) BS01 rna ? GO:0002181 ... P0CX41 29064494
    405204 5tbw:CX (3.0) BS02 rna ? GO:0002181 ... P0CX41 29064494
    405205 5tbw:CX (3.0) BS03 OHX ? GO:0002181 ... P0CX41 29064494
    405206 5tbw:CY (3.0) BS01 rna ? GO:0003735 ... P04449 29064494
    405207 5tbw:CZ (3.0) BS01 rna ? GO:0003735 ... P04456 29064494
    405208 5tbw:CZ (3.0) BS02 rna ? GO:0003735 ... P04456 29064494
    405209 5tbw:D (3.0) BS01 rna ? GO:0003723 ... P25443 29064494
    405210 5tbw:DA (3.0) BS01 rna ? GO:0002181 ... P05743 29064494
    405211 5tbw:DA (3.0) BS02 rna ? GO:0002181 ... P05743 29064494
    405212 5tbw:DA (3.0) BS03 OHX ? GO:0002181 ... P05743 29064494
    405213 5tbw:DB (3.0) BS01 rna ? GO:0002181 ... P0C2H6 29064494
    405214 5tbw:DC (3.0) BS01 rna ? GO:0002181 ... P02406 29064494
    405215 5tbw:DD (3.0) BS01 rna ? GO:0002181 ... P05747 29064494
    405216 5tbw:DD (3.0) BS02 OHX ? GO:0002181 ... P05747 29064494
    405217 5tbw:DE (3.0) BS01 rna ? GO:0002181 ... P14120 29064494
    405218 5tbw:DF (3.0) BS01 rna ? GO:0002181 ... P0C2H8 29064494
    405219 5tbw:DG (3.0) BS01 rna ? GO:0002181 ... P38061 29064494
    405220 5tbw:DH (3.0) BS01 rna ? GO:0000027 ... P05744 29064494
    405221 5tbw:DH (3.0) BS02 OHX ? GO:0000027 ... P05744 29064494
    405222 5tbw:DH (3.0) BS03 MG ? GO:0000027 ... P05744 29064494
    405223 5tbw:DI (3.0) BS01 rna ? GO:0002181 ... P87262 29064494
    405224 5tbw:DI (3.0) BS02 MG ? GO:0002181 ... P87262 29064494
    405225 5tbw:DJ (3.0) BS01 rna ? GO:0000463 ... P0CX84 29064494
    405226 5tbw:DJ (3.0) BS02 rna ? GO:0000463 ... P0CX84 29064494
    405227 5tbw:DK (3.0) BS01 rna ? GO:0002181 ... P05745 29064494
    405228 5tbw:DL (3.0) BS01 rna ? GO:0000448 ... P49166 29064494
    405229 5tbw:DL (3.0) BS02 rna ? GO:0000448 ... P49166 29064494
    405230 5tbw:DL (3.0) BS03 OHX ? GO:0000448 ... P49166 29064494
    405231 5tbw:DL (3.0) BS04 OHX ? GO:0000448 ... P49166 29064494
    405232 5tbw:DL (3.0) BS05 ZN ? GO:0000448 ... P49166 29064494
    405233 5tbw:DM (3.0) BS01 rna ? GO:0002181 ... P49167 29064494
    405234 5tbw:DN (3.0) BS01 rna ? GO:0002181 ... P04650 29064494
    405235 5tbw:DN (3.0) BS02 rna ? GO:0002181 ... P04650 29064494
    405236 5tbw:DO (3.0) BS01 rna ? GO:0003735 ... P0CH08 29064494
    405237 5tbw:DO (3.0) BS02 MG ? GO:0003735 ... P0CH08 29064494
    405238 5tbw:DO (3.0) BS03 ZN ? GO:0003735 ... P0CH08 29064494
    405239 5tbw:DQ (3.0) BS01 rna ? GO:0002181 ... P0CX27 29064494
    405240 5tbw:DQ (3.0) BS02 OHX ? GO:0002181 ... P0CX27 29064494
    405241 5tbw:DQ (3.0) BS03 ZN ? GO:0002181 ... P0CX27 29064494
    405242 5tbw:DR (3.0) BS01 rna ? GO:0002181 ... P0CX25 29064494
    405243 5tbw:DR (3.0) BS02 ZN ? GO:0002181 ... P0CX25 29064494
    405244 5tbw:E (3.0) BS01 rna ? GO:0000054 ... P05750 29064494
    405245 5tbw:F (3.0) BS01 rna ? GO:0002181 ... P0CX35 29064494
    405246 5tbw:G (3.0) BS01 rna ? GO:0000028 ... P26783 29064494
    405247 5tbw:H (3.0) BS01 rna ? GO:0000462 ... P0CX37 29064494
    405248 5tbw:I (3.0) BS01 rna ? GO:0002181 ... P26786 29064494
    405249 5tbw:J (3.0) BS01 rna ? GO:0000462 ... P0CX39 29064494
    405250 5tbw:J (3.0) BS02 rna ? GO:0000462 ... P0CX39 29064494
    405251 5tbw:J (3.0) BS03 OHX ? GO:0000462 ... P0CX39 29064494
    405252 5tbw:K (3.0) BS01 rna ? GO:0000462 ... O13516 29064494
    405253 5tbw:L (3.0) BS01 rna ? GO:0000054 ... Q08745 29064494
    405254 5tbw:M (3.0) BS01 rna ? GO:0000028 ... P0CX47 29064494
    405255 5tbw:M (3.0) BS02 OHX ? GO:0000028 ... P0CX47 29064494
    405256 5tbw:N (3.0) BS01 rna ? GO:0000028 ... P48589 29064494
    405257 5tbw:O (3.0) BS01 rna ? GO:0000462 ... P05756 29064494
    405258 5tbw:O (3.0) BS02 rna ? GO:0000462 ... P05756 29064494
    405259 5tbw:P (3.0) BS01 rna ? GO:0000028 ... P39516 29064494
    405260 5tbw:Q (3.0) BS01 rna ? GO:0000028 ... Q01855 29064494
    405261 5tbw:Q (3.0) BS02 rna ? GO:0000028 ... Q01855 29064494
    405262 5tbw:Q (3.0) BS03 OHX ? GO:0000028 ... Q01855 29064494
    405263 5tbw:R (3.0) BS01 rna ? GO:0000462 ... P0CX51 29064494
    405264 5tbw:Rb (3.0) BS01 rna ? GO:0001965 ... P38011 29064494
    405265 5tbw:Rb (3.0) BS02 OHX ? GO:0001965 ... P38011 29064494
    405266 5tbw:S (3.0) BS01 rna ? GO:0000028 ... P14127 29064494
    405267 5tbw:T (3.0) BS01 rna ? GO:0000054 ... P0CX55 29064494
    405268 5tbw:T (3.0) BS02 OHX ? GO:0000054 ... P0CX55 29064494
    405269 5tbw:U (3.0) BS01 rna ? GO:0000028 ... P07280 29064494
    405270 5tbw:V (3.0) BS01 rna ? GO:0000462 ... P38701 29064494
    405271 5tbw:X (3.0) BS01 rna ? GO:0002181 ... P0C0W1 29064494
    405272 5tbw:Y (3.0) BS01 rna ? GO:0000462 ... P0CX29 29064494
    405273 5tbw:Z (3.0) BS01 rna ? GO:0000462 ... P0CX31 29064494
    405274 5tbw:a (3.0) BS01 rna ? N/A Q3E792 29064494
    405275 5tbw:b (3.0) BS01 rna ? GO:0003735 ... P39939 29064494
    405276 5tbw:b (3.0) BS02 ZN ? GO:0003735 ... P39939 29064494
    405277 5tbw:c (3.0) BS01 rna ? GO:0000028 ... P35997 29064494
    405278 5tbw:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 29064494
    405279 5tbw:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 29064494
    405280 5tbw:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 29064494
    405281 5tbw:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 29064494
    405282 5tbw:c3 (3.0) BS02 rna ? GO:0000462 ... P05756 29064494
    405283 5tbw:c3 (3.0) BS03 OHX ? GO:0000462 ... P05756 29064494
    405284 5tbw:c4 (3.0) BS01 rna ? GO:0000028 ... P39516 29064494
    405285 5tbw:c5 (3.0) BS01 rna ? GO:0000028 ... Q01855 29064494
    405286 5tbw:c5 (3.0) BS02 OHX ? GO:0000028 ... Q01855 29064494
    405287 5tbw:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 29064494
    405288 5tbw:c7 (3.0) BS01 rna ? GO:0003735 ... P02407 29064494
    405289 5tbw:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 29064494
    405290 5tbw:c9 (3.0) BS01 rna ? GO:0000028 ... P07280 29064494
    405291 5tbw:c9 (3.0) BS02 MG ? GO:0000028 ... P07280 29064494
    405292 5tbw:d (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 29064494
    405293 5tbw:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 29064494
    405294 5tbw:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 29064494
    405295 5tbw:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 29064494
    405296 5tbw:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 29064494
    405297 5tbw:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 29064494
    405298 5tbw:d4 (3.0) BS02 OHX ? GO:0000462 ... P0CX31 29064494
    405299 5tbw:d5 (3.0) BS01 rna ? N/A Q3E792 29064494
    405300 5tbw:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 29064494
    405301 5tbw:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 29064494
    405302 5tbw:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 29064494
    405303 5tbw:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 29064494
    405304 5tbw:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 29064494
    405305 5tbw:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 29064494
    405306 5tbw:e (3.0) BS01 rna ? GO:0002181 ... P41057 29064494
    405307 5tbw:e (3.0) BS02 MG ? GO:0002181 ... P41057 29064494
    405308 5tbw:e (3.0) BS03 ZN ? GO:0002181 ... P41057 29064494
    405309 5tbw:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 29064494
    405310 5tbw:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 29064494
    405311 5tbw:f (3.0) BS01 rna ? GO:0002181 ... P0CX33 29064494
    405312 5tbw:g (3.0) BS01 rna ? GO:0003735 ... P05759 29064494
    405313 5tbw:g (3.0) BS02 ZN ? GO:0003735 ... P05759 29064494
    405314 5tbw:h (3.0) BS01 rna ? GO:0001965 ... P38011 29064494
    405315 5tbw:h (3.0) BS02 OHX ? GO:0001965 ... P38011 29064494
    405316 5tbw:i (3.0) BS01 rna ? N/A P39015 29064494
    405317 5tbw:i (3.0) BS02 rna ? N/A P39015 29064494
    405318 5tbw:i (3.0) BS03 MG ? N/A P39015 29064494
    405319 5tbw:j (3.0) BS01 rna ? GO:0002181 ... P0CX45 29064494
    405320 5tbw:j (3.0) BS02 rna ? GO:0002181 ... P0CX45 29064494
    405321 5tbw:j (3.0) BS03 MG ? GO:0002181 ... P0CX45 29064494
    405322 5tbw:j (3.0) BS04 MG ? GO:0002181 ... P0CX45 29064494
    405323 5tbw:k (3.0) BS01 rna ? GO:0000027 ... P14126 29064494
    405324 5tbw:k (3.0) BS02 OHX ? GO:0000027 ... P14126 29064494
    405325 5tbw:l (3.0) BS01 rna ? GO:0002181 ... P10664 29064494
    405326 5tbw:l (3.0) BS02 rna ? GO:0002181 ... P10664 29064494
    405327 5tbw:l (3.0) BS03 MG ? GO:0002181 ... P10664 29064494
    405328 5tbw:l (3.0) BS04 OHX ? GO:0002181 ... P10664 29064494
    405329 5tbw:m (3.0) BS01 rna ? GO:0000027 ... P26321 29064494
    405330 5tbw:m (3.0) BS02 rna ? GO:0000027 ... P26321 29064494
    405331 5tbw:n (3.0) BS01 rna ? GO:0000027 ... Q02326 29064494
    405332 5tbw:o (3.0) BS01 rna ? GO:0000463 ... P05737 29064494
    405333 5tbw:o (3.0) BS02 rna ? GO:0000463 ... P05737 29064494
    405334 5tbw:p (3.0) BS01 rna ? GO:0000470 ... P17076 29064494
    405335 5tbw:p (3.0) BS02 rna ? GO:0000470 ... P17076 29064494
    405336 5tbw:p0 (3.0) BS01 rna ? N/A P05317 29064494
    405337 5tbw:q (3.0) BS01 rna ? GO:0002181 ... P05738 29064494
    405338 5tbw:r (3.0) BS01 rna ? GO:0000027 ... P41805 29064494
    405339 5tbw:r (3.0) BS02 rna ? GO:0000027 ... P41805 29064494
    405340 5tbw:r (3.0) BS03 MG ? GO:0000027 ... P41805 29064494
    405341 5tbw:s (3.0) BS01 rna ? GO:0000027 ... Q3E757 29064494
    405342 5tbw:s (3.0) BS02 rna ? GO:0000027 ... Q3E757 29064494
    405343 5tbw:s0 (3.0) BS01 rna ? GO:0003735 ... P32905 29064494
    405344 5tbw:s1 (3.0) BS01 rna ? GO:0003735 ... P33442 29064494
    405345 5tbw:s1 (3.0) BS02 rna ? GO:0003735 ... P33442 29064494
    405346 5tbw:s1 (3.0) BS03 OHX ? GO:0003735 ... P33442 29064494
    405347 5tbw:s1 (3.0) BS04 OHX ? GO:0003735 ... P33442 29064494
    405348 5tbw:s2 (3.0) BS01 rna ? GO:0003723 ... P25443 29064494
    405349 5tbw:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 29064494
    405350 5tbw:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 29064494
    405351 5tbw:s5 (3.0) BS01 rna ? GO:0000028 ... P26783 29064494
    405352 5tbw:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 29064494
    405353 5tbw:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 29064494
    405354 5tbw:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 29064494
    405355 5tbw:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 29064494
    405356 5tbw:s8 (3.0) BS03 OHX ? GO:0000462 ... P0CX39 29064494
    405357 5tbw:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 29064494
    405358 5tbw:sM (3.0) BS01 rna ? N/A P39015 29064494
    405359 5tbw:sM (3.0) BS02 rna ? N/A P39015 29064494
    405360 5tbw:sM (3.0) BS03 MG ? N/A P39015 29064494
    405361 5tbw:t (3.0) BS01 rna ? GO:0002181 ... Q12690 29064494
    405362 5tbw:t (3.0) BS02 rna ? GO:0002181 ... Q12690 29064494
    405363 5tbw:t (3.0) BS03 MG ? GO:0002181 ... Q12690 29064494
    405364 5tbw:u (3.0) BS01 rna ? GO:0000027 ... P36105 29064494
    405365 5tbw:v (3.0) BS01 rna ? GO:0002181 ... P05748 29064494
    405366 5tbw:v (3.0) BS02 rna ? GO:0002181 ... P05748 29064494
    405367 5tbw:v (3.0) BS03 OHX ? GO:0002181 ... P05748 29064494
    405368 5tbw:w (3.0) BS01 rna ? GO:0000470 ... P26784 29064494
    405369 5tbw:x (3.0) BS01 rna ? GO:0000448 ... P05740 29064494
    405370 5tbw:x (3.0) BS02 rna ? GO:0000448 ... P05740 29064494
    405371 5tbw:x (3.0) BS03 MG ? GO:0000448 ... P05740 29064494
    405372 5tbw:x (3.0) BS04 OHX ? GO:0000448 ... P05740 29064494
    405373 5tbw:x (3.0) BS05 OHX ? GO:0000448 ... P05740 29064494
    405374 5tbw:y (3.0) BS01 rna ? GO:0002181 ... P0CX49 29064494
    405375 5tbw:y (3.0) BS02 OHX ? GO:0002181 ... P0CX49 29064494
    405376 5tbw:z (3.0) BS01 rna ? GO:0002181 ... P0CX82 29064494
    405377 5tbw:z (3.0) BS02 rna ? GO:0002181 ... P0CX82 29064494
    405378 5tbw:z (3.0) BS03 OHX ? GO:0002181 ... P0CX82 29064494
    405379 5tc0:A (2.24) BS01 79Y 2.7.10.1 GO:0004672 ... Q12866 28082036 MOAD: ic50=25nM
    405380 5tc1:D (3.6) BS01 rna ? GO:0003723 ... P03612 27992877
    405381 5tc1:E (3.6) BS01 rna ? GO:0003723 ... P03612 27992877
    405382 5tc1:G (3.6) BS01 rna ? GO:0003723 ... P03612 27992877
    405383 5tc1:H (3.6) BS01 rna ? GO:0003723 ... P03612 27992877
    405384 5tc1:M (3.6) BS01 rna ? GO:0003723 ... P03610 27992877
    405385 5tc3:A (2.462) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405386 5tc3:A (2.462) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405387 5tc3:A (2.462) BS03 GDP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405388 5tc3:A (2.462) BS04 GDP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405389 5tc3:B (2.462) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405390 5tc3:B (2.462) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405391 5tc3:B (2.462) BS03 GDP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405392 5tc3:B (2.462) BS04 GDP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    405393 5tc4:A (1.89) BS01 NAD 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 27899380
    405394 5tc4:A (1.89) BS02 L34 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 27899380 MOAD: ic50=663nM
    BindingDB: IC50=663nM
    405395 5tc4:A (1.89) BS03 PO4 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 27899380
    405396 5tc5:A (1.96) BS01 BIG 2.4.2.28 GO:0003824 ... Q13126 N/A
    405397 5tc5:B (1.96) BS01 BIG 2.4.2.28 GO:0003824 ... Q13126 N/A
    405398 5tc5:B (1.96) BS02 BIG 2.4.2.28 GO:0003824 ... Q13126 N/A
    405399 5tc5:C (1.96) BS01 BIG 2.4.2.28 GO:0003824 ... Q13126 N/A
    405400 5tc6:A (1.48) BS01 7A6 2.4.2.28 GO:0003824 ... Q13126 N/A BindingDB: Ki=0.214nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).