SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40601 1p0z:H (1.6) BS02 MO7 2.7.13.3 N/A P52687 12867417
    40602 1p0z:H (1.6) BS03 OMO 2.7.13.3 N/A P52687 12867417
    40603 1p0z:I (1.6) BS01 FLC 2.7.13.3 N/A P52687 12867417
    40604 1p0z:I (1.6) BS02 MO7 2.7.13.3 N/A P52687 12867417
    40605 1p0z:I (1.6) BS03 OMO 2.7.13.3 N/A P52687 12867417
    40606 1p0z:J (1.6) BS01 FLC 2.7.13.3 N/A P52687 12867417
    40607 1p0z:J (1.6) BS02 MO7 2.7.13.3 N/A P52687 12867417
    40608 1p0z:J (1.6) BS03 OMO 2.7.13.3 N/A P52687 12867417
    40609 1p10:A (2.25) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 2716847
    40610 1p11:E (1.93) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1998685
    40611 1p11:E (1.93) BS02 peptide 3.4.21.12 GO:0004252 ... P00778 1998685
    40612 1p12:E (1.9) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1998685
    40613 1p13:A (1.63) BS01 peptide 2.7.10.2 N/A P00523 12834342
    40614 1p13:B (1.63) BS01 peptide 2.7.10.2 N/A P00523 12834342
    40615 1p16:A (2.7) BS01 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    40616 1p16:A (2.7) BS02 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    40617 1p16:A (2.7) BS03 G 2.7.7.50 GO:0004484 ... P78587 12820968
    40618 1p16:B (2.7) BS01 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    40619 1p16:B (2.7) BS02 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    40620 1p16:B (2.7) BS03 GTP 2.7.7.50 GO:0004484 ... P78587 12820968
    40621 1p17:A (2.7) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40622 1p17:B (2.7) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40623 1p17:C (2.7) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40624 1p17:D (2.7) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40625 1p18:A (2.0) BS01 MG 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40626 1p18:A (2.0) BS02 7HP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40627 1p18:A (2.0) BS03 PRP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40628 1p18:B (2.0) BS01 7HP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40629 1p18:B (2.0) BS02 PRP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288
    40630 1p19:A (2.3) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    40631 1p19:B (2.3) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    40632 1p19:C (2.3) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    40633 1p19:D (2.3) BS01 IMP 2.4.2.8 GO:0000287 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    40634 1p1b:A (2.8) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40635 1p1b:B (2.8) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40636 1p1b:C (2.8) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40637 1p1b:D (2.8) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40638 1p1c:A (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40639 1p1c:A (2.5) BS02 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40640 1p1c:B (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12925789
    40641 1p1h:A (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    40642 1p1h:B (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    40643 1p1h:C (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    40644 1p1h:D (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    40645 1p1i:A (2.4) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    40646 1p1i:B (2.4) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    40647 1p1j:A (1.7) BS01 PO4 5.5.1.4 GO:0004512 ... P11986 12832758
    40648 1p1j:A (1.7) BS02 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    40649 1p1j:A (1.7) BS03 GOL 5.5.1.4 GO:0004512 ... P11986 12832758
    40650 1p1j:B (1.7) BS01 PO4 5.5.1.4 GO:0004512 ... P11986 12832758
    40651 1p1j:B (1.7) BS02 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    40652 1p1j:B (1.7) BS03 GOL 5.5.1.4 GO:0004512 ... P11986 12832758
    40653 1p1k:A (2.1) BS01 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    40654 1p1k:B (2.1) BS01 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    40655 1p1m:A (1.5) BS01 MET 3.5.4.28
    3.5.4.31
    GO:0016787 ... Q9X034 N/A
    40656 1p1n:A (1.6) BS01 KAI ? GO:0015276 ... P19491 12730367 MOAD: Kd=0.16uM
    BindingDB: EC50=380000nM, Ki=3690nM
    40657 1p1o:A (1.6) BS01 QUS ? GO:0015276 ... P19491 12730367 MOAD: Kd=1.74uM
    40658 1p1q:A (2.0) BS01 ZN ? GO:0015276 ... P19491 12730367
    40659 1p1q:A (2.0) BS02 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    40660 1p1q:B (2.0) BS01 ZN ? GO:0015276 ... P19491 12730367
    40661 1p1q:B (2.0) BS02 ZN ? GO:0015276 ... P19491 12730367
    40662 1p1q:B (2.0) BS03 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    40663 1p1q:C (2.0) BS01 ZN ? GO:0015276 ... P19491 12730367
    40664 1p1q:C (2.0) BS02 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    40665 1p1r:A (1.57) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40666 1p1r:A (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40667 1p1r:A (1.57) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    40668 1p1r:A (1.57) BS04 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40669 1p1r:A (1.57) BS05 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40670 1p1r:B (1.57) BS01 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40671 1p1r:B (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40672 1p1r:B (1.57) BS03 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40673 1p1r:B (1.57) BS04 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    40674 1p1r:B (1.57) BS05 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40675 1p1r:C (1.57) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40676 1p1r:C (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40677 1p1r:C (1.57) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    40678 1p1r:C (1.57) BS04 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40679 1p1r:C (1.57) BS05 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40680 1p1r:D (1.57) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40681 1p1r:D (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    40682 1p1r:D (1.57) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    40683 1p1r:D (1.57) BS04 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    40684 1p1u:A (2.0) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    40685 1p1u:B (2.0) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    40686 1p1v:A (1.4) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 12649272
    40687 1p1v:A (1.4) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12649272
    40688 1p1v:B (1.4) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 12649272
    40689 1p1v:B (1.4) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12649272
    40690 1p1v:C (1.4) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 12649272
    40691 1p1v:C (1.4) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12649272
    40692 1p1w:A (1.8) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    40693 1p1w:B (1.8) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    40694 1p1z:A (3.26) BS01 peptide ? N/A P01901 14595439
    40695 1p22:A (2.95) BS01 peptide ? N/A Q9Y297 12820959
    40696 1p28:A (1.7) BS01 HBR ? GO:0005549 ... Q8MTC1 12766173 MOAD: Kd=3.8uM
    40697 1p29:A (2.2) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40698 1p29:A (2.2) BS02 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40699 1p29:A (2.2) BS03 PLP 2.4.1.1 GO:0004645 ... P00489 12930991
    40700 1p2a:A (2.5) BS01 5BN 2.7.11.22 GO:0000082 ... P24941 12852944 MOAD: ic50=12nM
    BindingDB: IC50=12nM
    40701 1p2b:A (2.2) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40702 1p2b:A (2.2) BS02 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40703 1p2b:A (2.2) BS03 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40704 1p2b:A (2.2) BS04 PLP 2.4.1.1 GO:0004645 ... P00489 12930991
    40705 1p2d:A (1.94) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40706 1p2d:A (1.94) BS02 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40707 1p2d:A (1.94) BS03 PLP 2.4.1.1 GO:0004645 ... P00489 12930991
    40708 1p2e:A (2.2) BS01 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40709 1p2e:A (2.2) BS02 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40710 1p2e:A (2.2) BS03 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40711 1p2e:A (2.2) BS04 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40712 1p2e:A (2.2) BS05 FAD 1.3.2.4 GO:0009055 ... P0C278 14609326
    40713 1p2e:A (2.2) BS06 FUM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40714 1p2g:A (2.3) BS01 GLC 2.4.1.1 GO:0004645 ... P00489 12930991
    40715 1p2g:A (2.3) BS02 PLP 2.4.1.1 GO:0004645 ... P00489 12930991
    40716 1p2h:A (2.1) BS01 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40717 1p2h:A (2.1) BS02 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40718 1p2h:A (2.1) BS03 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40719 1p2h:A (2.1) BS04 HEM 1.3.2.4 GO:0009055 ... P0C278 14609326
    40720 1p2h:A (2.1) BS05 FAD 1.3.2.4 GO:0009055 ... P0C278 14609326
    40721 1p2h:A (2.1) BS06 TEO 1.3.2.4 GO:0009055 ... P0C278 14609326
    40722 1p2i:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    40723 1p2j:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    40724 1p2k:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    40725 1p2p:A (2.6) BS01 CA 3.1.1.4 GO:0002446 ... P00592 6876174
    40726 1p2p:A (2.6) BS02 CA 3.1.1.4 GO:0002446 ... P00592 6876174
    40727 1p2s:A (2.45) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    40728 1p2s:A (2.45) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    40729 1p2s:A (2.45) BS03 ETF 3.6.5.2 GO:0003924 ... P01112 12842038
    40730 1p2t:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    40731 1p2t:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    40732 1p2u:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    40733 1p2u:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    40734 1p2v:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    40735 1p2v:A (2.3) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    40736 1p2y:A (2.3) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14556625
    40737 1p2y:A (2.3) BS02 NCT 1.14.15.1 GO:0004497 ... P00183 14556625
    40738 1p31:A (1.85) BS01 EPU 6.3.2.8 GO:0005524 ... P45066 12837790
    40739 1p31:B (1.85) BS01 EPU 6.3.2.8 GO:0005524 ... P45066 12837790
    40740 1p33:A (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    40741 1p33:A (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    40742 1p33:B (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    40743 1p33:B (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    40744 1p33:C (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    40745 1p33:C (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    40746 1p33:D (2.86) BS01 NDP 1.5.1.33 GO:0006729 ... P42556 12925782
    40747 1p33:D (2.86) BS02 MTX 1.5.1.33 GO:0006729 ... P42556 12925782
    40748 1p34:A (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    40749 1p34:A (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    40750 1p34:B (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    40751 1p34:B (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    40752 1p34:C (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    40753 1p34:C (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    40754 1p34:D (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    40755 1p34:D (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    40756 1p34:E (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    40757 1p34:E (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    40758 1p34:F (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    40759 1p34:F (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    40760 1p34:G (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    40761 1p34:G (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    40762 1p34:H (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    40763 1p34:H (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    40764 1p39:A (2.0) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    40765 1p39:A (2.0) BS02 MGT 2.1.1.57 GO:0003723 ... P07617 9145102
    40766 1p3a:A (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    40767 1p3a:A (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    40768 1p3a:B (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    40769 1p3a:B (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    40770 1p3a:C (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    40771 1p3a:C (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    40772 1p3a:D (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    40773 1p3a:D (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    40774 1p3a:E (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    40775 1p3a:E (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    40776 1p3a:F (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    40777 1p3a:F (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    40778 1p3a:G (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    40779 1p3a:G (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    40780 1p3a:H (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    40781 1p3a:H (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    40782 1p3b:A (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    40783 1p3b:A (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    40784 1p3b:B (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    40785 1p3b:B (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    40786 1p3b:C (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    40787 1p3b:C (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    40788 1p3b:D (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    40789 1p3b:D (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    40790 1p3b:E (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    40791 1p3b:E (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    40792 1p3b:F (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    40793 1p3b:F (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    40794 1p3b:G (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    40795 1p3b:G (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    40796 1p3b:H (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    40797 1p3b:H (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    40798 1p3d:A (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    40799 1p3d:A (1.7) BS02 UMA 6.3.2.8 GO:0005524 ... P45066 12837790
    40800 1p3d:A (1.7) BS03 ANP 6.3.2.8 GO:0005524 ... P45066 12837790

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).