SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2036 2037 2038 2039 2040 2041 2042 2043 2044 2045 2046 2047 2048 2049 2050 2051 2052 2053 2054 2055 2056 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    409001 5u2r:A (1.8) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409002 5u2r:A (1.8) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409003 5u2r:A (1.8) BS04 1S0 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409004 5u2r:A (1.8) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409005 5u2r:A (1.8) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409006 5u2s:A (2.3) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409007 5u2s:A (2.3) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409008 5u2s:A (2.3) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409009 5u2s:A (2.3) BS04 1RZ 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409010 5u2s:A (2.3) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409011 5u2t:A (1.79) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409012 5u2t:A (1.79) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409013 5u2t:A (1.79) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409014 5u2t:A (1.79) BS04 1RY 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409015 5u2t:A (1.79) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28402499
    409016 5u2v:A (2.2) BS01 7WQ ? N/A Q95460 28166217
    409017 5u2v:C (2.2) BS01 7WQ ? N/A Q95460 28166217
    409018 5u2w:A (1.55) BS01 NAP ? GO:0000166 ... B4E730 N/A
    409019 5u2w:B (1.55) BS01 NAP ? GO:0000166 ... B4E730 N/A
    409020 5u2w:C (1.55) BS01 NAP ? GO:0000166 ... B4E730 N/A
    409021 5u2w:D (1.55) BS01 NAP ? GO:0000166 ... B4E730 N/A
    409022 5u30:A (2.92) BS01 rna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409023 5u30:A (2.92) BS02 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409024 5u30:A (2.92) BS03 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409025 5u31:A (2.89) BS01 rna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409026 5u31:A (2.89) BS02 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409027 5u31:A (2.89) BS03 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409028 5u31:A (2.89) BS04 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409029 5u32:A (2.191) BS01 GDP 6.5.1.3 GO:0003972 ... P43075 29165709
    409030 5u33:A (3.75) BS01 rna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409031 5u33:A (3.75) BS02 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409032 5u33:A (3.75) BS03 dna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409033 5u34:A (3.255) BS01 rna 3.1.-.- GO:0003677 ... T0D7A2 27984729
    409034 5u35:A (1.8) BS01 MXE N/A N/A N/A 28082595
    409035 5u35:B (1.8) BS01 MXE N/A N/A N/A 28082595
    409036 5u38:A (1.6) BS01 MMA ? GO:0030246 ... G1EUI6 28867234
    409037 5u38:A (1.6) BS02 MAN ? GO:0030246 ... G1EUI6 28867234
    409038 5u38:A (1.6) BS03 MN ? GO:0030246 ... G1EUI6 28867234
    409039 5u38:A (1.6) BS04 CA ? GO:0030246 ... G1EUI6 28867234
    409040 5u39:A (1.75) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 28549219
    409041 5u39:A (1.75) BS02 C90 3.5.1.108 GO:0006796 ... P47205 28549219 BindingDB: IC50=<2.1nM, Kd=0.480000nM
    409042 5u3a:A (0.95) BS01 CA 3.2.1.1 GO:0003824 ... P04746 31241898
    409043 5u3b:A (2.0) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 28549219
    409044 5u3b:A (2.0) BS02 7TD 3.5.1.108 GO:0006796 ... P47205 28549219 MOAD: ic50=1.5nM
    BindingDB: IC50=0.001000nM
    409045 5u3b:B (2.0) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 28549219
    409046 5u3b:B (2.0) BS02 7TD 3.5.1.108 GO:0006796 ... P47205 28549219 MOAD: ic50=1.5nM
    BindingDB: IC50=0.001000nM
    409047 5u3c:A (4.6) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409048 5u3c:A (4.6) BS02 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409049 5u3c:B (4.6) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409050 5u3c:B (4.6) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409051 5u3c:B (4.6) BS03 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409052 5u3c:B (4.6) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409053 5u3c:C (4.6) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409054 5u3c:C (4.6) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409055 5u3c:C (4.6) BS03 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409056 5u3c:D (4.6) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409057 5u3c:D (4.6) BS02 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    409058 5u3d:A (1.77) BS01 MRY N/A N/A N/A N/A
    409059 5u3e:A (2.3) BS01 MMA ? GO:0030246 ... P58906 28803976
    409060 5u3e:A (2.3) BS02 MN ? GO:0030246 ... P58906 28803976
    409061 5u3e:A (2.3) BS03 CA ? GO:0030246 ... P58906 28803976
    409062 5u3f:A (1.695) BS01 7TS 2.6.1.42 GO:0003824 ... P9WQ75 28272868
    409063 5u3f:B (1.695) BS01 7TS 2.6.1.42 GO:0003824 ... P9WQ75 28272868
    409064 5u3i:A (1.95) BS01 HEM ? GO:0004601 ... P69905 28337324
    409065 5u3i:A (1.95) BS02 7SJ ? GO:0004601 ... P69905 28337324
    409066 5u3i:B (1.95) BS01 HEM ? GO:0004601 ... P68871 28337324
    409067 5u3i:C (1.95) BS01 7SJ ? GO:0004601 ... P69905 28337324
    409068 5u3i:C (1.95) BS02 HEM ? GO:0004601 ... P69905 28337324
    409069 5u3i:D (1.95) BS01 HEM ? GO:0004601 ... P68871 28337324
    409070 5u3j:H (2.74) BS01 peptide N/A N/A N/A 28783671
    409071 5u3k:A (2.637) BS01 peptide N/A N/A N/A 28783671
    409072 5u3k:H (2.637) BS01 peptide N/A N/A N/A 28783671
    409073 5u3k:H (2.637) BS02 CA N/A N/A N/A 28783671
    409074 5u3l:A (2.165) BS01 peptide N/A N/A N/A 28783671
    409075 5u3l:H (2.165) BS01 peptide N/A N/A N/A 28783671
    409076 5u3m:H (2.418) BS01 peptide N/A N/A N/A 28783671
    409077 5u3n:H (2.0) BS01 peptide N/A N/A N/A 28783671
    409078 5u3o:H (1.761) BS01 peptide N/A N/A N/A 28783671
    409079 5u3q:A (1.5) BS01 7UJ ? GO:0003677 ... Q03181 28320959
    409080 5u3q:A (1.5) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409081 5u3q:A (1.5) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409082 5u3q:B (1.5) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409083 5u3q:B (1.5) BS02 7UJ ? GO:0003677 ... Q03181 28320959
    409084 5u3q:B (1.5) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409085 5u3r:A (1.95) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409086 5u3r:A (1.95) BS02 7V1 ? GO:0003677 ... Q03181 28320959 BindingDB: EC50=511.8nM
    409087 5u3r:A (1.95) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409088 5u3r:B (1.95) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409089 5u3r:B (1.95) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409090 5u3r:B (1.95) BS03 7V1 ? GO:0003677 ... Q03181 28320959 BindingDB: EC50=511.8nM
    409091 5u3s:A (2.0) BS01 7V4 ? GO:0003677 ... Q03181 28320959
    409092 5u3s:A (2.0) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409093 5u3s:B (2.0) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409094 5u3s:B (2.0) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409095 5u3s:B (2.0) BS03 7V4 ? GO:0003677 ... Q03181 28320959
    409096 5u3t:A (1.7) BS01 7UY ? GO:0003677 ... Q03181 28320959
    409097 5u3t:A (1.7) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409098 5u3t:A (1.7) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409099 5u3t:B (1.7) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409100 5u3t:B (1.7) BS02 7UY ? GO:0003677 ... Q03181 28320959
    409101 5u3t:B (1.7) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409102 5u3u:A (2.1) BS01 7TV ? GO:0003677 ... Q03181 28320959
    409103 5u3u:A (2.1) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409104 5u3u:A (2.1) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409105 5u3u:B (2.1) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409106 5u3u:B (2.1) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409107 5u3v:A (1.84) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409108 5u3v:A (1.84) BS02 7TY ? GO:0003677 ... Q03181 28320959
    409109 5u3v:A (1.84) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409110 5u3v:B (1.84) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409111 5u3v:B (1.84) BS02 7TY ? GO:0003677 ... Q03181 28320959
    409112 5u3w:A (1.8) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409113 5u3w:A (1.8) BS02 7U1 ? GO:0003677 ... Q03181 28320959
    409114 5u3w:A (1.8) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409115 5u3w:B (1.8) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409116 5u3w:B (1.8) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409117 5u3w:B (1.8) BS03 7U1 ? GO:0003677 ... Q03181 28320959
    409118 5u3x:A (2.1) BS01 7U4 ? GO:0003677 ... Q03181 28320959
    409119 5u3x:A (2.1) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409120 5u3x:A (2.1) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409121 5u3x:B (2.1) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409122 5u3x:B (2.1) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409123 5u3x:B (2.1) BS03 7U4 ? GO:0003677 ... Q03181 28320959
    409124 5u3y:A (1.9) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409125 5u3y:A (1.9) BS02 7U7 ? GO:0003677 ... Q03181 28320959 BindingDB: EC50=20nM
    409126 5u3y:A (1.9) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409127 5u3y:B (1.9) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409128 5u3y:B (1.9) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409129 5u3y:B (1.9) BS03 7U7 ? GO:0003677 ... Q03181 28320959 BindingDB: EC50=20nM
    409130 5u3z:A (1.72) BS01 7UA ? GO:0003677 ... Q03181 28320959
    409131 5u3z:A (1.72) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409132 5u3z:A (1.72) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409133 5u3z:A (1.72) BS04 B7G ? GO:0003677 ... Q03181 28320959
    409134 5u3z:B (1.72) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409135 5u3z:B (1.72) BS02 7UA ? GO:0003677 ... Q03181 28320959
    409136 5u40:A (2.0) BS01 7UD ? GO:0003677 ... Q03181 28320959
    409137 5u40:A (2.0) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409138 5u40:A (2.0) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409139 5u40:B (2.0) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409140 5u40:B (2.0) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409141 5u40:B (2.0) BS03 7UD ? GO:0003677 ... Q03181 28320959
    409142 5u41:A (1.9) BS01 7UG ? GO:0003677 ... Q03181 28320959
    409143 5u41:A (1.9) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409144 5u41:A (1.9) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409145 5u41:B (1.9) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409146 5u41:B (1.9) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409147 5u41:B (1.9) BS03 7UG ? GO:0003677 ... Q03181 28320959
    409148 5u42:A (1.7) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409149 5u42:A (1.7) BS02 7SM ? GO:0003677 ... Q03181 28320959
    409150 5u42:A (1.7) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409151 5u42:A (1.7) BS04 B7G ? GO:0003677 ... Q03181 28320959
    409152 5u42:B (1.7) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409153 5u42:B (1.7) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409154 5u42:B (1.7) BS03 7SM ? GO:0003677 ... Q03181 28320959
    409155 5u43:A (1.9) BS01 7SS ? GO:0003677 ... Q03181 28320959
    409156 5u43:A (1.9) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409157 5u43:A (1.9) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409158 5u43:A (1.9) BS04 B7G ? GO:0003677 ... Q03181 28320959
    409159 5u43:B (1.9) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409160 5u43:B (1.9) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409161 5u43:B (1.9) BS03 7SS ? GO:0003677 ... Q03181 28320959
    409162 5u44:A (2.15) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409163 5u44:A (2.15) BS02 7SV ? GO:0003677 ... Q03181 28320959
    409164 5u44:A (2.15) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409165 5u44:B (2.15) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409166 5u44:B (2.15) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409167 5u44:B (2.15) BS03 7SV ? GO:0003677 ... Q03181 28320959
    409168 5u45:A (1.95) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409169 5u45:A (1.95) BS02 7SY ? GO:0003677 ... Q03181 28320959
    409170 5u45:A (1.95) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409171 5u45:B (1.95) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409172 5u45:B (1.95) BS02 7SY ? GO:0003677 ... Q03181 28320959
    409173 5u45:B (1.95) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409174 5u46:A (2.0) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409175 5u46:A (2.0) BS02 7T1 ? GO:0003677 ... Q03181 28320959 BindingDB: EC50=1nM, IC50=5nM, Ki=0.048000nM
    409176 5u46:A (2.0) BS03 B7G ? GO:0003677 ... Q03181 28320959
    409177 5u46:B (2.0) BS01 B7G ? GO:0003677 ... Q03181 28320959
    409178 5u46:B (2.0) BS02 B7G ? GO:0003677 ... Q03181 28320959
    409179 5u46:B (2.0) BS03 7T1 ? GO:0003677 ... Q03181 28320959 BindingDB: EC50=1nM, IC50=5nM, Ki=0.048000nM
    409180 5u48:A (1.5) BS01 S4B ? GO:0001523 ... P02766 28920684 BindingDB: Kd=470nM
    409181 5u48:B (1.5) BS01 S4B ? GO:0001523 ... P02766 28920684 BindingDB: Kd=470nM
    409182 5u4a:A (1.9) BS01 7VG ? GO:0001523 ... P02766 28920684 BindingDB: Kd=440nM
    409183 5u4a:B (1.9) BS01 7VG ? GO:0001523 ... P02766 28920684 BindingDB: Kd=440nM
    409184 5u4b:A (1.448) BS01 XOS ? GO:0001523 ... P02766 28920684 BindingDB: Kd=1800nM
    409185 5u4b:B (1.448) BS01 XOS ? GO:0001523 ... P02766 28920684 BindingDB: Kd=1800nM
    409186 5u4c:A (1.7) BS01 XBS ? GO:0001523 ... P02766 28920684 BindingDB: Kd=990nM
    409187 5u4c:B (1.7) BS01 XBS ? GO:0001523 ... P02766 28920684 BindingDB: Kd=990nM
    409188 5u4d:A (1.55) BS01 XLO ? GO:0001523 ... P02766 28920684 BindingDB: Kd=470nM
    409189 5u4d:B (1.55) BS01 XLO ? GO:0001523 ... P02766 28920684 BindingDB: Kd=470nM
    409190 5u4e:A (1.45) BS01 XLB ? GO:0001523 ... P02766 28920684 BindingDB: Kd=450nM
    409191 5u4e:B (1.45) BS01 XLB ? GO:0001523 ... P02766 28920684 BindingDB: Kd=450nM
    409192 5u4f:A (1.5) BS01 IWW ? GO:0001523 ... P02766 28920684 BindingDB: Kd=470nM
    409193 5u4f:B (1.5) BS01 IWW ? GO:0001523 ... P02766 28920684 BindingDB: Kd=470nM
    409194 5u4g:A (1.8) BS01 7UV ? GO:0001523 ... P02766 28920684
    409195 5u4g:B (1.8) BS01 7UV ? GO:0001523 ... P02766 28920684
    409196 5u4h:A (1.05) BS01 0V5 2.5.1.7 GO:0003824 ... A0A0R0VXX6 N/A
    409197 5u4h:B (1.05) BS01 0V5 2.5.1.7 GO:0003824 ... A0A0R0VXX6 N/A
    409198 5u4i:0 (3.5) BS01 rna ? GO:0000027 ... P0AG51 28077875
    409199 5u4i:0 (3.5) BS02 rna ? GO:0000027 ... P0AG51 28077875
    409200 5u4i:1 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 28077875

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).