SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2037 2038 2039 2040 2041 2042 2043 2044 2045 2046 2047 2048 2049 2050 2051 2052 2053 2054 2055 2056 2057 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    409201 5u4i:2 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 28077875
    409202 5u4i:3 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 28077875
    409203 5u4i:4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 28077875
    409204 5u4i:5 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 28077875
    409205 5u4i:5 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 28077875
    409206 5u4i:C (3.5) BS01 rna ? GO:0000027 ... P60422 28077875
    409207 5u4i:D (3.5) BS01 rna ? GO:0000027 ... P60438 28077875
    409208 5u4i:E (3.5) BS01 rna ? GO:0001070 ... P60723 28077875
    409209 5u4i:F (3.5) BS01 rna ? GO:0000027 ... P62399 28077875
    409210 5u4i:F (3.5) BS02 rna ? GO:0000027 ... P62399 28077875
    409211 5u4i:F (3.5) BS03 rna ? GO:0000027 ... P62399 28077875
    409212 5u4i:G (3.5) BS01 rna ? GO:0000027 ... P0AG55 28077875
    409213 5u4i:H (3.5) BS01 rna ? GO:0002181 ... P0A7R1 28077875
    409214 5u4i:J (3.5) BS01 rna ? GO:0000027 ... P0A7J7 28077875
    409215 5u4i:K (3.5) BS01 rna ? GO:0002181 ... P0AA10 28077875
    409216 5u4i:L (3.5) BS01 rna ? GO:0002181 ... P0ADY3 28077875
    409217 5u4i:L (3.5) BS02 rna ? GO:0002181 ... P0ADY3 28077875
    409218 5u4i:M (3.5) BS01 rna ? GO:0002181 ... P02413 28077875
    409219 5u4i:N (3.5) BS01 rna ? GO:0000027 ... P0ADY7 28077875
    409220 5u4i:N (3.5) BS02 rna ? GO:0000027 ... P0ADY7 28077875
    409221 5u4i:O (3.5) BS01 rna ? GO:0000027 ... P0AG44 28077875
    409222 5u4i:P (3.5) BS01 rna ? GO:0002181 ... P0C018 28077875
    409223 5u4i:P (3.5) BS02 rna ? GO:0002181 ... P0C018 28077875
    409224 5u4i:Q (3.5) BS01 rna ? GO:0000027 ... P0A7K6 28077875
    409225 5u4i:Q (3.5) BS02 rna ? GO:0000027 ... P0A7K6 28077875
    409226 5u4i:R (3.5) BS01 rna ? GO:0000027 ... P0A7L3 28077875
    409227 5u4i:S (3.5) BS01 rna ? GO:0002181 ... P0AG48 28077875
    409228 5u4i:T (3.5) BS01 rna ? GO:0002181 ... P61175 28077875
    409229 5u4i:U (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 28077875
    409230 5u4i:V (3.5) BS01 rna ? GO:0000027 ... P60624 28077875
    409231 5u4i:W (3.5) BS01 rna ? GO:0000027 ... P68919 28077875
    409232 5u4i:W (3.5) BS02 rna ? GO:0000027 ... P68919 28077875
    409233 5u4i:X (3.5) BS01 rna ? GO:0000027 ... P0A7L8 28077875
    409234 5u4i:X (3.5) BS02 rna ? GO:0000027 ... P0A7L8 28077875
    409235 5u4i:Y (3.5) BS01 rna ? GO:0000027 ... P0A7M2 28077875
    409236 5u4i:Z (3.5) BS01 rna ? GO:0000027 ... P0A7M6 28077875
    409237 5u4i:b (3.5) BS01 rna ? GO:0000028 ... P0A7V0 28077875
    409238 5u4i:c (3.5) BS01 rna ? GO:0000028 ... P0A7V3 28077875
    409239 5u4i:d (3.5) BS01 rna ? GO:0000028 ... P0A7V8 28077875
    409240 5u4i:e (3.5) BS01 rna ? GO:0000028 ... P0A7W1 28077875
    409241 5u4i:f (3.5) BS01 rna ? GO:0002181 ... P02358 28077875
    409242 5u4i:g (3.5) BS01 rna ? GO:0000028 ... P02359 28077875
    409243 5u4i:g (3.5) BS02 rna ? GO:0000028 ... P02359 28077875
    409244 5u4i:h (3.5) BS01 rna ? GO:0000028 ... P0A7W7 28077875
    409245 5u4i:i (3.5) BS01 rna ? GO:0000049 ... P0A7X3 28077875
    409246 5u4i:i (3.5) BS02 rna ? GO:0000049 ... P0A7X3 28077875
    409247 5u4i:j (3.5) BS01 rna ? GO:0000049 ... P0A7R5 28077875
    409248 5u4i:k (3.5) BS01 rna ? GO:0002181 ... P0A7R9 28077875
    409249 5u4i:l (3.5) BS01 rna ? GO:0000049 ... P0A7S3 28077875
    409250 5u4i:m (3.5) BS01 rna ? GO:0000049 ... P0A7S9 28077875
    409251 5u4i:m (3.5) BS02 rna ? GO:0000049 ... P0A7S9 28077875
    409252 5u4i:n (3.5) BS01 rna ? GO:0000028 ... P0AG59 28077875
    409253 5u4i:o (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 28077875
    409254 5u4i:o (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 28077875
    409255 5u4i:p (3.5) BS01 rna ? GO:0000028 ... P0A7T3 28077875
    409256 5u4i:q (3.5) BS01 rna ? GO:0000028 ... P0AG63 28077875
    409257 5u4i:r (3.5) BS01 rna ? GO:0002181 ... P0A7T7 28077875
    409258 5u4i:s (3.5) BS01 rna ? GO:0003723 ... P0A7U3 28077875
    409259 5u4i:t (3.5) BS01 rna ? GO:0000028 ... P0A7U7 28077875
    409260 5u4i:u (3.5) BS01 rna ? GO:0000028 ... P68679 28077875
    409261 5u4i:v (3.5) BS01 rna ? GO:0003747 ... P07012 28077875
    409262 5u4i:v (3.5) BS02 rna ? GO:0003747 ... P07012 28077875
    409263 5u4i:v (3.5) BS03 rna ? GO:0003747 ... P07012 28077875
    409264 5u4i:w (3.5) BS01 rna ? GO:0072344 ... P36675 28077875
    409265 5u4i:w (3.5) BS02 rna ? GO:0072344 ... P36675 28077875
    409266 5u4j:d (3.7) BS01 rna ? GO:0000028 ... P0A7V8 28077875
    409267 5u4j:e (3.7) BS01 rna ? GO:0000028 ... P0A7W1 28077875
    409268 5u4j:l (3.7) BS01 rna ? GO:0000049 ... P0A7S3 28077875
    409269 5u4j:v (3.7) BS01 rna ? GO:0003747 ... P07012 28077875
    409270 5u4j:w (3.7) BS01 rna ? GO:0072344 ... P36675 28077875
    409271 5u4j:w (3.7) BS02 rna ? GO:0072344 ... P36675 28077875
    409272 5u4p:B (2.5) BS01 ZN 3.4.19.12 GO:0008233 ... P43588 28844860
    409273 5u4q:A (1.5) BS01 NAD N/A N/A N/A N/A
    409274 5u4q:B (1.5) BS01 NAD N/A N/A N/A N/A
    409275 5u4s:A (1.4) BS01 NAP ? GO:0000166 ... B4EFS5 N/A
    409276 5u4s:B (1.4) BS01 NAP ? GO:0000166 ... B4EFS5 N/A
    409277 5u4t:A (2.086) BS01 SAH ? GO:0003677 ... Q2MG72 28876898
    409278 5u4w:B (9.1) BS01 BMA 3.4.21.91
    3.6.1.15
    3.6.4.13
    N/A A0A0B4L3F2 28067914
    409279 5u4w:D (9.1) BS01 BMA 3.4.21.91
    3.6.1.15
    3.6.4.13
    N/A A0A0B4L3F2 28067914
    409280 5u4w:F (9.1) BS01 BMA 3.4.21.91
    3.6.1.15
    3.6.4.13
    N/A A0A0B4L3F2 28067914
    409281 5u4x:A (1.88) BS01 SAH 2.1.1.319 GO:0016274 ... Q86X55 29719619 BindingDB: Ki=400nM
    409282 5u4x:A (1.88) BS02 7VM 2.1.1.319 GO:0016274 ... Q86X55 29719619
    409283 5u4x:B (1.88) BS01 SAH 2.1.1.319 GO:0016274 ... Q86X55 29719619 BindingDB: Ki=400nM
    409284 5u4x:B (1.88) BS02 7VM 2.1.1.319 GO:0016274 ... Q86X55 29719619
    409285 5u4x:C (1.88) BS01 SAH 2.1.1.319 GO:0016274 ... Q86X55 29719619 BindingDB: Ki=400nM
    409286 5u4x:C (1.88) BS02 7VM 2.1.1.319 GO:0016274 ... Q86X55 29719619
    409287 5u4x:D (1.88) BS01 SAH 2.1.1.319 GO:0016274 ... Q86X55 29719619 BindingDB: Ki=400nM
    409288 5u4x:D (1.88) BS02 7VM 2.1.1.319 GO:0016274 ... Q86X55 29719619
    409289 5u4y:A (2.4994) BS01 GAL ? N/A P01857 28475752
    409290 5u51:A (2.8) BS01 G4P ? N/A Q5NFG1 28864445
    409291 5u51:B (2.8) BS01 G4P ? N/A Q5NFG1 28864445
    409292 5u52:A (1.942) BS01 GAL ? N/A P01857 28475752
    409293 5u52:B (1.942) BS01 GAL ? N/A P01857 28475752
    409294 5u53:A (1.4) BS01 CAZ 3.5.2.6 GO:0008800 ... H6UQI0 28613873
    409295 5u55:A (2.45) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409296 5u55:A (2.45) BS02 S0H 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409297 5u55:B (2.45) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409298 5u55:B (2.45) BS02 S0H 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409299 5u55:C (2.45) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409300 5u55:C (2.45) BS02 S0H 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409301 5u55:D (2.45) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409302 5u55:D (2.45) BS02 S0H 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409303 5u56:B (2.65) BS01 PRO ? N/A Q5NFG1 28864445
    409304 5u57:A (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409305 5u57:A (2.73) BS02 S0H 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409306 5u57:B (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409307 5u57:C (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409308 5u57:C (2.73) BS02 S0H 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409309 5u57:D (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409310 5u58:A (2.7) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409311 5u58:A (2.7) BS02 TB6 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409312 5u58:B (2.7) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409313 5u58:C (2.7) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409314 5u58:C (2.7) BS02 TB6 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409315 5u5d:A (2.49) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409316 5u5d:A (2.49) BS02 TB6 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409317 5u5d:B (2.49) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409318 5u5d:B (2.49) BS02 TB6 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409319 5u5d:D (2.49) BS01 MN 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409320 5u5d:D (2.49) BS02 TB6 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    409321 5u5f:A (1.81) BS01 peptide N/A N/A N/A N/A
    409322 5u5f:B (1.81) BS01 peptide N/A N/A N/A N/A
    409323 5u5f:B (1.81) BS02 MRY N/A N/A N/A N/A
    409324 5u5g:A (2.048) BS01 NAP ? GO:0000166 ... I6R485 27977135
    409325 5u5g:A (2.048) BS02 7VD ? GO:0000166 ... I6R485 27977135
    409326 5u5g:B (2.048) BS01 NAP ? GO:0000166 ... I6R485 27977135
    409327 5u5g:B (2.048) BS02 7VD ? GO:0000166 ... I6R485 27977135
    409328 5u5g:C (2.048) BS01 NAP ? GO:0000166 ... I6R485 27977135
    409329 5u5g:C (2.048) BS02 7VD ? GO:0000166 ... I6R485 27977135
    409330 5u5g:D (2.048) BS01 NAP ? GO:0000166 ... I6R485 27977135
    409331 5u5g:D (2.048) BS02 7VD ? GO:0000166 ... I6R485 27977135
    409332 5u5h:A (1.8) BS01 7VV ? N/A O75530 27992714 MOAD: ic50=1.3uM
    BindingDB: IC50=1300nM
    409333 5u5i:A (2.2) BS01 NAD 1.17.1.8 GO:0000166 ... D8R6G2 29187521
    409334 5u5i:A (2.2) BS02 CA 1.17.1.8 GO:0000166 ... D8R6G2 29187521
    409335 5u5i:B (2.2) BS01 NAD 1.17.1.8 GO:0000166 ... D8R6G2 29187521
    409336 5u5k:A (2.33) BS01 7VY ? N/A O75530 27992714 MOAD: ic50=95uM
    BindingDB: IC50=95000nM, Kd=32000nM
    409337 5u5l:A (2.55) BS01 7VA ? GO:0003677 ... P37231 28499821 BindingDB: EC50=43nM
    409338 5u5m:A (1.88) BS01 peptide N/A N/A N/A N/A
    409339 5u5m:B (1.88) BS01 peptide N/A N/A N/A N/A
    409340 5u5m:B (1.88) BS02 MRY N/A N/A N/A N/A
    409341 5u5n:A (2.1) BS01 NAD 1.17.1.8 GO:0000166 ... D8R6G2 29187521
    409342 5u5n:A (2.1) BS02 CA 1.17.1.8 GO:0000166 ... D8R6G2 29187521
    409343 5u5n:B (2.1) BS01 NAD 1.17.1.8 GO:0000166 ... D8R6G2 29187521
    409344 5u5p:A (2.171) BS01 peptide ? GO:0005737 ... P52293 29175432
    409345 5u5p:A (2.171) BS02 peptide ? GO:0005737 ... P52293 29175432
    409346 5u5q:A (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 28300169
    409347 5u5q:A (3.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 28300169
    409348 5u5q:A (3.8) BS03 MG 2.7.7.6 GO:0000428 ... P04050 28300169
    409349 5u5q:B (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 28300169
    409350 5u5q:C (3.8) BS01 ZN ? GO:0000428 ... P16370 28300169
    409351 5u5q:I (3.8) BS01 ZN ? GO:0000428 ... P27999 28300169
    409352 5u5q:J (3.8) BS01 ZN ? GO:0000428 ... P22139 28300169
    409353 5u5q:L (3.8) BS01 ZN ? GO:0000428 ... P40422 28300169
    409354 5u5r:A (2.1) BS01 peptide ? GO:0005737 ... P52293 29175432
    409355 5u5s:A (-1.00) BS01 peptide ? N/A P25440 28262505
    409356 5u5t:A (1.6) BS01 peptide ? N/A O75530 27992714
    409357 5u5t:A (1.6) BS02 7W7 ? N/A O75530 27992714 MOAD: ic50=3.9uM
    BindingDB: IC50=1600nM
    409358 5u5t:B (1.6) BS01 peptide ? N/A O75530 27992714
    409359 5u5t:B (1.6) BS02 7W7 ? N/A O75530 27992714 MOAD: ic50=3.9uM
    BindingDB: IC50=1600nM
    409360 5u5u:A (1.33) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409361 5u5u:A (1.33) BS02 NTN 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=619uM
    409362 5u5v:A (1.222) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409363 5u5v:A (1.222) BS02 7WA 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=29.6uM
    409364 5u5w:A (1.29) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409365 5u5w:A (1.29) BS02 7W1 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=154uM
    409366 5u5x:A (1.55) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409367 5u5x:A (1.55) BS02 TP5 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=1.3uM
    409368 5u5y:A (1.3) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409369 5u5y:A (1.3) BS02 7W4 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=522uM
    409370 5u5z:A (1.26) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409371 5u5z:A (1.26) BS02 7VP 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=3472uM
    409372 5u60:A (1.5) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409373 5u60:A (1.5) BS02 7VS 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409374 5u61:A (1.222) BS01 HEM 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952
    409375 5u61:A (1.222) BS02 7WG 1.11.1.-
    1.11.1.5
    GO:0004601 ... B3LRE1 28760952 MOAD: Kd=0.04uM
    409376 5u62:A (1.9) BS01 peptide ? N/A O75530 27992714
    409377 5u62:A (1.9) BS02 7WD ? N/A O75530 27992714 MOAD: ic50=1.3uM
    BindingDB: IC50=1300nM
    409378 5u62:B (1.9) BS01 peptide ? N/A O75530 27992714
    409379 5u62:B (1.9) BS02 7WD ? N/A O75530 27992714 MOAD: ic50=1.3uM
    BindingDB: IC50=1300nM
    409380 5u63:A (1.99) BS01 FAD 1.8.1.9 GO:0004791 ... P43788 N/A
    409381 5u63:A (1.99) BS02 NAP 1.8.1.9 GO:0004791 ... P43788 N/A
    409382 5u63:B (1.99) BS01 FAD 1.8.1.9 GO:0004791 ... P43788 N/A
    409383 5u63:B (1.99) BS02 NAP 1.8.1.9 GO:0004791 ... P43788 N/A
    409384 5u66:A (1.7) BS01 peptide ? N/A P01857 28475752
    409385 5u66:A (1.7) BS02 GAL ? N/A P01857 28475752
    409386 5u69:A (1.28) BS01 LQD ? N/A O75530 28254486 MOAD: Ki=600nM
    BindingDB: Ki=600nM, Kd=38000nM
    409387 5u6a:A (1.736) BS01 peptide N/A N/A N/A N/A
    409388 5u6a:B (1.736) BS01 peptide N/A N/A N/A N/A
    409389 5u6a:B (1.736) BS02 MRY N/A N/A N/A N/A
    409390 5u6b:A (2.84) BS01 7YS 2.7.10.1 GO:0004672 ... P30530 28724631
    409391 5u6b:B (2.84) BS01 7YS 2.7.10.1 GO:0004672 ... P30530 28724631
    409392 5u6b:C (2.84) BS01 7YS 2.7.10.1 GO:0004672 ... P30530 28724631
    409393 5u6b:D (2.84) BS01 7YS 2.7.10.1 GO:0004672 ... P30530 28724631
    409394 5u6c:A (2.1) BS01 7YS 2.7.10.1 GO:0004672 ... Q12866 28724631 MOAD: Ki<0.05nM
    409395 5u6c:B (2.1) BS01 7YS 2.7.10.1 GO:0004672 ... Q12866 28724631 MOAD: Ki<0.05nM
    409396 5u6d:A (1.64) BS01 7XG ? N/A O75530 28254486 MOAD: Ki=2.6nM
    BindingDB: Ki=2.6nM
    409397 5u6e:A (2.095) BS01 82M ? GO:0019031 ... A0A0M3KKW9 28266845
    409398 5u6e:B (2.095) BS01 82M ? GO:0019031 ... A0A0M3KKW9 28266845
    409399 5u6g:A (2.6) BS01 RET ? GO:0001523 ... P50120 N/A
    409400 5u6g:A (2.6) BS02 RET ? GO:0001523 ... P50120 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).