SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40801 1p3d:B (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    40802 1p3d:B (1.7) BS02 UMA 6.3.2.8 GO:0005524 ... P45066 12837790
    40803 1p3d:B (1.7) BS03 ANP 6.3.2.8 GO:0005524 ... P45066 12837790
    40804 1p3f:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    40805 1p3f:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    40806 1p3f:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    40807 1p3f:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    40808 1p3f:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    40809 1p3f:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    40810 1p3f:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    40811 1p3f:D (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    40812 1p3f:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    40813 1p3f:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    40814 1p3f:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    40815 1p3f:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    40816 1p3f:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    40817 1p3f:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    40818 1p3f:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    40819 1p3f:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    40820 1p3g:A (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    40821 1p3g:A (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    40822 1p3g:B (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    40823 1p3g:B (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    40824 1p3g:C (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    40825 1p3g:C (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    40826 1p3g:D (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    40827 1p3g:D (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    40828 1p3g:E (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    40829 1p3g:E (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    40830 1p3g:F (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    40831 1p3g:F (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    40832 1p3g:G (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    40833 1p3g:G (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    40834 1p3g:H (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    40835 1p3g:H (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    40836 1p3i:A (2.3) BS01 dna ? GO:0000786 ... P84233 14739929
    40837 1p3i:A (2.3) BS02 dna ? GO:0000786 ... P84233 14739929
    40838 1p3i:B (2.3) BS01 dna ? GO:0000786 ... P62799 14739929
    40839 1p3i:B (2.3) BS02 dna ? GO:0000786 ... P62799 14739929
    40840 1p3i:C (2.3) BS01 dna ? GO:0000786 ... P06897 14739929
    40841 1p3i:C (2.3) BS02 dna ? GO:0000786 ... P06897 14739929
    40842 1p3i:D (2.3) BS01 dna ? GO:0000786 ... P02281 14739929
    40843 1p3i:D (2.3) BS02 dna ? GO:0000786 ... P02281 14739929
    40844 1p3i:E (2.3) BS01 dna ? GO:0000786 ... P84233 14739929
    40845 1p3i:E (2.3) BS02 dna ? GO:0000786 ... P84233 14739929
    40846 1p3i:F (2.3) BS01 dna ? GO:0000786 ... P62799 14739929
    40847 1p3i:F (2.3) BS02 dna ? GO:0000786 ... P62799 14739929
    40848 1p3i:G (2.3) BS01 dna ? GO:0000786 ... P06897 14739929
    40849 1p3i:G (2.3) BS02 dna ? GO:0000786 ... P06897 14739929
    40850 1p3i:H (2.3) BS01 dna ? GO:0000786 ... P02281 14739929
    40851 1p3i:H (2.3) BS02 dna ? GO:0000786 ... P02281 14739929
    40852 1p3j:A (1.9) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 15100224
    40853 1p3j:A (1.9) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 15100224
    40854 1p3k:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    40855 1p3k:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    40856 1p3k:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    40857 1p3k:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    40858 1p3k:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    40859 1p3k:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    40860 1p3k:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    40861 1p3k:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    40862 1p3k:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    40863 1p3k:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    40864 1p3k:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    40865 1p3k:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    40866 1p3k:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    40867 1p3k:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    40868 1p3k:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    40869 1p3l:A (2.4) BS01 dna ? GO:0000786 ... P84233 14739929
    40870 1p3l:A (2.4) BS02 dna ? GO:0000786 ... P84233 14739929
    40871 1p3l:B (2.4) BS01 dna ? GO:0000786 ... P62799 14739929
    40872 1p3l:B (2.4) BS02 dna ? GO:0000786 ... P62799 14739929
    40873 1p3l:C (2.4) BS01 dna ? GO:0000786 ... P06897 14739929
    40874 1p3l:C (2.4) BS02 dna ? GO:0000786 ... P06897 14739929
    40875 1p3l:D (2.4) BS01 dna ? GO:0000786 ... P02281 14739929
    40876 1p3l:D (2.4) BS02 dna ? GO:0000786 ... P02281 14739929
    40877 1p3l:E (2.4) BS01 dna ? GO:0000786 ... P84233 14739929
    40878 1p3l:E (2.4) BS02 dna ? GO:0000786 ... P84233 14739929
    40879 1p3l:F (2.4) BS01 dna ? GO:0000786 ... P62799 14739929
    40880 1p3l:F (2.4) BS02 dna ? GO:0000786 ... P62799 14739929
    40881 1p3l:G (2.4) BS01 dna ? GO:0000786 ... P06897 14739929
    40882 1p3l:G (2.4) BS02 dna ? GO:0000786 ... P06897 14739929
    40883 1p3l:H (2.4) BS01 dna ? GO:0000786 ... P02281 14739929
    40884 1p3l:H (2.4) BS02 dna ? GO:0000786 ... P02281 14739929
    40885 1p3m:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    40886 1p3m:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    40887 1p3m:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    40888 1p3m:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    40889 1p3m:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    40890 1p3m:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    40891 1p3m:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    40892 1p3m:D (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    40893 1p3m:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    40894 1p3m:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    40895 1p3m:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    40896 1p3m:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    40897 1p3m:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    40898 1p3m:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    40899 1p3m:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    40900 1p3m:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    40901 1p3o:A (2.75) BS01 dna ? GO:0000786 ... P84233 14739929
    40902 1p3o:A (2.75) BS02 dna ? GO:0000786 ... P84233 14739929
    40903 1p3o:B (2.75) BS01 dna ? GO:0000786 ... P62799 14739929
    40904 1p3o:B (2.75) BS02 dna ? GO:0000786 ... P62799 14739929
    40905 1p3o:C (2.75) BS01 dna ? GO:0000786 ... P06897 14739929
    40906 1p3o:C (2.75) BS02 dna ? GO:0000786 ... P06897 14739929
    40907 1p3o:D (2.75) BS01 dna ? GO:0000786 ... P02281 14739929
    40908 1p3o:D (2.75) BS02 dna ? GO:0000786 ... P02281 14739929
    40909 1p3o:E (2.75) BS01 dna ? GO:0000786 ... P84233 14739929
    40910 1p3o:E (2.75) BS02 dna ? GO:0000786 ... P84233 14739929
    40911 1p3o:F (2.75) BS01 dna ? GO:0000786 ... P62799 14739929
    40912 1p3o:F (2.75) BS02 dna ? GO:0000786 ... P62799 14739929
    40913 1p3o:G (2.75) BS01 dna ? GO:0000786 ... P06897 14739929
    40914 1p3o:G (2.75) BS02 dna ? GO:0000786 ... P06897 14739929
    40915 1p3o:H (2.75) BS01 dna ? GO:0000786 ... P02281 14739929
    40916 1p3o:H (2.75) BS02 dna ? GO:0000786 ... P02281 14739929
    40917 1p3p:A (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    40918 1p3p:A (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    40919 1p3p:B (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    40920 1p3p:B (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    40921 1p3p:C (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    40922 1p3p:C (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    40923 1p3p:D (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    40924 1p3p:D (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    40925 1p3p:E (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    40926 1p3p:E (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    40927 1p3p:F (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    40928 1p3p:F (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    40929 1p3p:G (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    40930 1p3p:G (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    40931 1p3p:H (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    40932 1p3p:H (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    40933 1p3t:A (2.1) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    40934 1p3u:A (1.75) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    40935 1p3v:A (2.25) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    40936 1p3v:A (2.25) BS02 CMO 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    40937 1p3w:A (2.1) BS01 PLP 2.8.1.7 GO:0002143 ... P0A6B7 12860127
    40938 1p3w:B (2.1) BS01 PLP 2.8.1.7 GO:0002143 ... P0A6B7 12860127
    40939 1p3y:1 (2.54) BS01 FAD 4.1.1.- GO:0003824 ... Q9RC23 12876343
    40940 1p42:A (2.0) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40941 1p42:A (2.0) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40942 1p42:A (2.0) BS03 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40943 1p42:A (2.0) BS04 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40944 1p42:B (2.0) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40945 1p42:B (2.0) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40946 1p42:B (2.0) BS03 ZN 3.5.1.108 GO:0005737 ... O67648 12819349
    40947 1p43:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    40948 1p43:A (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 12846578
    40949 1p43:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    40950 1p43:B (1.8) BS02 2PG 4.2.1.11 GO:0000015 ... P00924 12846578
    40951 1p44:A (2.7) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40952 1p44:A (2.7) BS02 GEQ 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: IC50=200nM
    40953 1p44:B (2.7) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40954 1p44:B (2.7) BS02 GEQ 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: IC50=200nM
    40955 1p44:C (2.7) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40956 1p44:C (2.7) BS02 GEQ 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: IC50=200nM
    40957 1p44:D (2.7) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40958 1p44:D (2.7) BS02 GEQ 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: IC50=200nM
    40959 1p44:E (2.7) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40960 1p44:F (2.7) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40961 1p45:A (2.6) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40962 1p45:A (2.6) BS02 TCL 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: Ki=220nM, IC50=1000nM
    40963 1p45:A (2.6) BS03 TCL 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: Ki=220nM, IC50=1000nM
    40964 1p45:B (2.6) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 12606558
    40965 1p45:B (2.6) BS02 TCL 1.3.1.9 GO:0004318 ... P9WGR1 12606558 BindingDB: Ki=220nM, IC50=1000nM
    40966 1p47:A (2.2) BS01 dna ? N/A P08046 12818197
    40967 1p47:A (2.2) BS02 dna ? N/A P08046 12818197
    40968 1p47:A (2.2) BS03 ZN ? N/A P08046 12818197
    40969 1p47:A (2.2) BS04 ZN ? N/A P08046 12818197
    40970 1p47:A (2.2) BS05 ZN ? N/A P08046 12818197
    40971 1p47:B (2.2) BS01 dna ? N/A P08046 12818197
    40972 1p47:B (2.2) BS02 dna ? N/A P08046 12818197
    40973 1p47:B (2.2) BS03 ZN ? N/A P08046 12818197
    40974 1p47:B (2.2) BS04 ZN ? N/A P08046 12818197
    40975 1p47:B (2.2) BS05 ZN ? N/A P08046 12818197
    40976 1p48:A (2.0) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    40977 1p48:A (2.0) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 12846578
    40978 1p48:B (2.0) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    40979 1p48:B (2.0) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 12846578
    40980 1p49:A (2.6) BS01 CA 3.1.6.2 GO:0004065 ... P08842 12657638
    40981 1p4a:A (2.22) BS01 PCP ? GO:0003677 ... P37551 12837784
    40982 1p4a:B (2.22) BS01 PCP ? GO:0003677 ... P37551 12837784
    40983 1p4a:C (2.22) BS01 PCP ? GO:0003677 ... P37551 12837784
    40984 1p4a:D (2.22) BS01 PCP ? GO:0003677 ... P37551 12837784
    40985 1p4b:H (2.35) BS01 peptide ? GO:0003823 ... P01820 14754898
    40986 1p4b:L (2.35) BS01 peptide ? N/A P01723 14754898
    40987 1p4c:A (1.35) BS01 FMN 1.1.3.15
    1.1.99.31
    GO:0010181 ... P05414
    P20932
    14604988
    40988 1p4d:A (2.6) BS01 MG 3.6.4.12
    5.6.2.1
    N/A P14565 14604527
    40989 1p4d:B (2.6) BS01 MG 3.6.4.12
    5.6.2.1
    N/A P14565 14604527
    40990 1p4d:C (2.6) BS01 MG 3.6.4.12
    5.6.2.1
    N/A P14565 14604527
    40991 1p4e:A (2.7) BS01 dna ? GO:0003677 ... P03870 12716882
    40992 1p4e:A (2.7) BS02 dna ? GO:0003677 ... P03870 12716882
    40993 1p4e:A (2.7) BS03 dna ? GO:0003677 ... P03870 12716882
    40994 1p4e:B (2.7) BS01 dna ? GO:0003677 ... P03870 12716882
    40995 1p4e:B (2.7) BS02 dna ? GO:0003677 ... P03870 12716882
    40996 1p4e:B (2.7) BS03 dna ? GO:0003677 ... P03870 12716882
    40997 1p4e:C (2.7) BS01 dna ? GO:0003677 ... P03870 12716882
    40998 1p4e:C (2.7) BS02 dna ? GO:0003677 ... P03870 12716882
    40999 1p4e:C (2.7) BS03 dna ? GO:0003677 ... P03870 12716882
    41000 1p4e:C (2.7) BS04 dna ? GO:0003677 ... P03870 12716882

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).