SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    409801 5u9f:U (3.2) BS01 rna ? GO:0000028 ... P68679 28300532
    409802 5u9f:Y (3.2) BS01 rna ? GO:0000049 ... P36675 28300532
    409803 5u9f:Y (3.2) BS02 rna ? GO:0000049 ... P36675 28300532
    409804 5u9f:Z (3.2) BS01 rna ? GO:0003747 ... P07012 28300532
    409805 5u9f:Z (3.2) BS02 rna ? GO:0003747 ... P07012 28300532
    409806 5u9f:Z (3.2) BS03 rna ? GO:0003747 ... P07012 28300532
    409807 5u9g:03 (3.2) BS01 rna ? GO:0000027 ... P0A7L0 28300532
    409808 5u9g:04 (3.2) BS01 rna ? GO:0000027 ... P60422 28300532
    409809 5u9g:04 (3.2) BS02 rna ? GO:0000027 ... P60422 28300532
    409810 5u9g:05 (3.2) BS01 rna ? GO:0000027 ... P60438 28300532
    409811 5u9g:06 (3.2) BS01 rna ? GO:0001070 ... P60723 28300532
    409812 5u9g:07 (3.2) BS01 rna ? GO:0000027 ... P62399 28300532
    409813 5u9g:07 (3.2) BS02 rna ? GO:0000027 ... P62399 28300532
    409814 5u9g:07 (3.2) BS03 rna ? GO:0000027 ... P62399 28300532
    409815 5u9g:08 (3.2) BS01 rna ? GO:0000027 ... P0AG55 28300532
    409816 5u9g:09 (3.2) BS01 rna ? GO:0002181 ... P0A7R1 28300532
    409817 5u9g:10 (3.2) BS01 rna ? GO:0002181 ... P0A7J3 28300532
    409818 5u9g:11 (3.2) BS01 rna ? GO:0000027 ... P0A7J7 28300532
    409819 5u9g:12 (3.2) BS01 rna ? GO:0002181 ... P0AA10 28300532
    409820 5u9g:13 (3.2) BS01 rna ? GO:0002181 ... P0ADY3 28300532
    409821 5u9g:13 (3.2) BS02 rna ? GO:0002181 ... P0ADY3 28300532
    409822 5u9g:14 (3.2) BS01 rna ? GO:0002181 ... P02413 28300532
    409823 5u9g:15 (3.2) BS01 rna ? GO:0000027 ... P0ADY7 28300532
    409824 5u9g:15 (3.2) BS02 rna ? GO:0000027 ... P0ADY7 28300532
    409825 5u9g:16 (3.2) BS01 rna ? GO:0000027 ... P0AG44 28300532
    409826 5u9g:17 (3.2) BS01 rna ? GO:0002181 ... P0C018 28300532
    409827 5u9g:17 (3.2) BS02 rna ? GO:0002181 ... P0C018 28300532
    409828 5u9g:18 (3.2) BS01 rna ? GO:0000027 ... P0A7K6 28300532
    409829 5u9g:18 (3.2) BS02 rna ? GO:0000027 ... P0A7K6 28300532
    409830 5u9g:19 (3.2) BS01 rna ? GO:0000027 ... P0A7L3 28300532
    409831 5u9g:20 (3.2) BS01 rna ? GO:0002181 ... P0AG48 28300532
    409832 5u9g:21 (3.2) BS01 rna ? GO:0002181 ... P61175 28300532
    409833 5u9g:22 (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 28300532
    409834 5u9g:23 (3.2) BS01 rna ? GO:0000027 ... P60624 28300532
    409835 5u9g:24 (3.2) BS01 rna ? GO:0000027 ... P68919 28300532
    409836 5u9g:24 (3.2) BS02 rna ? GO:0000027 ... P68919 28300532
    409837 5u9g:25 (3.2) BS01 rna ? GO:0000027 ... P0A7L8 28300532
    409838 5u9g:25 (3.2) BS02 rna ? GO:0000027 ... P0A7L8 28300532
    409839 5u9g:26 (3.2) BS01 rna ? GO:0000027 ... P0A7M2 28300532
    409840 5u9g:27 (3.2) BS01 rna ? GO:0000027 ... P0A7M6 28300532
    409841 5u9g:28 (3.2) BS01 rna ? GO:0000027 ... P0AG51 28300532
    409842 5u9g:28 (3.2) BS02 rna ? GO:0000027 ... P0AG51 28300532
    409843 5u9g:29 (3.2) BS01 rna ? GO:0002181 ... P0A7M9 28300532
    409844 5u9g:30 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 28300532
    409845 5u9g:31 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 28300532
    409846 5u9g:32 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 28300532
    409847 5u9g:33 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 28300532
    409848 5u9g:34 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 28300532
    409849 5u9g:34 (3.2) BS02 ZN ? GO:0002181 ... P0A7Q6 28300532
    409850 5u9g:B (3.2) BS01 rna ? GO:0000028 ... P0A7V0 28300532
    409851 5u9g:C (3.2) BS01 rna ? GO:0000028 ... P0A7V3 28300532
    409852 5u9g:D (3.2) BS01 rna ? GO:0000028 ... P0A7V8 28300532
    409853 5u9g:E (3.2) BS01 rna ? GO:0000028 ... P0A7W1 28300532
    409854 5u9g:F (3.2) BS01 rna ? GO:0002181 ... P02358 28300532
    409855 5u9g:G (3.2) BS01 rna ? GO:0003723 ... P02359 28300532
    409856 5u9g:G (3.2) BS02 rna ? GO:0003723 ... P02359 28300532
    409857 5u9g:G (3.2) BS03 rna ? GO:0003723 ... P02359 28300532
    409858 5u9g:H (3.2) BS01 rna ? GO:0000028 ... P0A7W7 28300532
    409859 5u9g:I (3.2) BS01 rna ? GO:0000049 ... P0A7X3 28300532
    409860 5u9g:J (3.2) BS01 rna ? GO:0000049 ... P0A7R5 28300532
    409861 5u9g:K (3.2) BS01 rna ? GO:0002181 ... P0A7R9 28300532
    409862 5u9g:L (3.2) BS01 rna ? GO:0000049 ... P0A7S3 28300532
    409863 5u9g:M (3.2) BS01 rna ? GO:0000049 ... P0A7S9 28300532
    409864 5u9g:N (3.2) BS01 rna ? GO:0000028 ... P0AG59 28300532
    409865 5u9g:O (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 28300532
    409866 5u9g:O (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 28300532
    409867 5u9g:P (3.2) BS01 rna ? GO:0000028 ... P0A7T3 28300532
    409868 5u9g:Q (3.2) BS01 rna ? GO:0000028 ... P0AG63 28300532
    409869 5u9g:R (3.2) BS01 rna ? GO:0002181 ... P0A7T7 28300532
    409870 5u9g:S (3.2) BS01 rna ? GO:0000028 ... P0A7U3 28300532
    409871 5u9g:T (3.2) BS01 rna ? GO:0000028 ... P0A7U7 28300532
    409872 5u9g:U (3.2) BS01 rna ? GO:0000028 ... P68679 28300532
    409873 5u9g:U (3.2) BS02 rna ? GO:0000028 ... P68679 28300532
    409874 5u9g:Y (3.2) BS01 rna ? GO:0000049 ... P36675 28300532
    409875 5u9g:Z (3.2) BS01 rna ? GO:0003747 ... P07012 28300532
    409876 5u9g:Z (3.2) BS02 rna ? GO:0003747 ... P07012 28300532
    409877 5u9h:A (1.85) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409878 5u9h:A (1.85) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409879 5u9h:A (1.85) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409880 5u9h:A (1.85) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409881 5u9h:A (1.85) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409882 5u9h:A (1.85) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409883 5u9h:A (1.85) BS07 NA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28108654
    409884 5u9i:A (2.3) BS01 FAR ? GO:0003755 ... Q9NZN9 28739921
    409885 5u9j:A (2.1) BS01 GER ? GO:0003755 ... Q9NZN9 28739921
    409886 5u9j:B (2.1) BS01 GER ? GO:0003755 ... Q9NZN9 28739921
    409887 5u9m:A (2.35) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 28533431
    409888 5u9m:C (2.35) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 28533431
    409889 5u9n:A (2.4) BS01 BMF ? N/A Q5CQB7 N/A
    409890 5u9n:A (2.4) BS02 BMF ? N/A Q5CQB7 N/A
    409891 5u9n:B (2.4) BS01 BMF ? N/A Q5CQB7 N/A
    409892 5u9p:A (1.65) BS01 NAP 1.1.1.69 GO:0000166 ... B4EEX4 N/A
    409893 5u9p:B (1.65) BS01 NAP 1.1.1.69 GO:0000166 ... B4EEX4 N/A
    409894 5u9p:C (1.65) BS01 NAP 1.1.1.69 GO:0000166 ... B4EEX4 N/A
    409895 5u9p:D (1.65) BS01 NAP 1.1.1.69 GO:0000166 ... B4EEX4 N/A
    409896 5u9z:A (2.001) BS01 MN N/A N/A N/A 30936502
    409897 5u9z:B (2.001) BS01 MN N/A N/A N/A 30936502
    409898 5ua1:A (2.9) BS01 dna ? GO:0000976 ... P96856 N/A
    409899 5ua1:A (2.9) BS02 dna ? GO:0000976 ... P96856 N/A
    409900 5ua1:A (2.9) BS03 dna ? GO:0000976 ... P96856 N/A
    409901 5ua1:A (2.9) BS04 dna ? GO:0000976 ... P96856 N/A
    409902 5ua1:B (2.9) BS01 dna ? GO:0000976 ... P96856 N/A
    409903 5ua1:B (2.9) BS02 dna ? GO:0000976 ... P96856 N/A
    409904 5ua1:B (2.9) BS03 dna ? GO:0000976 ... P96856 N/A
    409905 5ua1:B (2.9) BS04 dna ? GO:0000976 ... P96856 N/A
    409906 5ua2:A (2.9002) BS01 dna ? GO:0000976 ... P96856 N/A
    409907 5ua2:A (2.9002) BS02 dna ? GO:0000976 ... P96856 N/A
    409908 5ua5:A (2.5) BS01 peptide ? GO:0042981 ... P42485 28053104
    409909 5uab:A (1.9) BS01 84M 2.7.10.1 GO:0004672 ... P08581 28341789
    409910 5uac:C (3.8) BS01 RFP 2.7.7.6 GO:0000345 ... P0A8V2 28009073
    409911 5uac:D (3.8) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409912 5uac:D (3.8) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409913 5uac:D (3.8) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409914 5uac:J (3.8) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409915 5uac:J (3.8) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409916 5uac:J (3.8) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409917 5uad:A (2.25) BS01 84P 2.7.10.1 GO:0004672 ... P08581 28341789
    409918 5uag:D (3.399) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409919 5uag:D (3.399) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409920 5uag:D (3.399) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409921 5uag:J (3.399) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409922 5uag:J (3.399) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409923 5uag:J (3.399) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409924 5uah:C (4.1) BS01 RFP 2.7.7.6 GO:0000345 ... P0A8V2 28009073
    409925 5uah:D (4.1) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409926 5uah:D (4.1) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409927 5uah:D (4.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409928 5uah:J (4.1) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409929 5uah:J (4.1) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409930 5uah:J (4.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409931 5uaj:D (3.915) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409932 5uaj:D (3.915) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409933 5uaj:D (3.915) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409934 5uaj:J (3.915) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409935 5uaj:J (3.915) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409936 5uaj:J (3.915) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409937 5uak:A (3.87) BS01 peptide 5.6.1.6 GO:0005254 ... P13569 28340353
    409938 5ual:C (3.887) BS01 RFP 2.7.7.6 GO:0000345 ... P0A8V2 28009073
    409939 5ual:D (3.887) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409940 5ual:D (3.887) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409941 5ual:D (3.887) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409942 5ual:J (3.887) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409943 5ual:J (3.887) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409944 5ual:J (3.887) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409945 5uam:A (1.45) BS01 ZN 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409946 5uam:B (1.45) BS01 ZN 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409947 5uan:A (3.508) BS01 peptide ? GO:0003677 ... P19793 29021580
    409948 5uan:A (3.508) BS02 dna ? GO:0003677 ... P19793 29021580
    409949 5uan:A (3.508) BS03 dna ? GO:0003677 ... P19793 29021580
    409950 5uan:A (3.508) BS04 ZN ? GO:0003677 ... P19793 29021580
    409951 5uan:A (3.508) BS05 9CR ? GO:0003677 ... P19793 29021580 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    409952 5uan:B (3.508) BS01 peptide ? GO:0003677 ... P10826 29021580
    409953 5uan:B (3.508) BS02 dna ? GO:0003677 ... P10826 29021580
    409954 5uan:B (3.508) BS03 dna ? GO:0003677 ... P10826 29021580
    409955 5uan:B (3.508) BS04 ZN ? GO:0003677 ... P10826 29021580
    409956 5uan:B (3.508) BS05 ZN ? GO:0003677 ... P10826 29021580
    409957 5uan:B (3.508) BS06 REA ? GO:0003677 ... P10826 29021580
    409958 5uao:A (1.88) BS01 FAD ? GO:0000166 ... W2EQU4 28032983
    409959 5uao:D (1.88) BS01 FAD ? GO:0000166 ... W2EQU4 28032983
    409960 5uap:A (2.03) BS01 HEM 1.14.13.- GO:0004497 ... P20813 28368100
    409961 5uap:A (2.03) BS02 CM5 1.14.13.- GO:0004497 ... P20813 28368100
    409962 5uap:A (2.03) BS03 CM5 1.14.13.- GO:0004497 ... P20813 28368100
    409963 5uap:A (2.03) BS04 CM5 1.14.13.- GO:0004497 ... P20813 28368100
    409964 5uap:A (2.03) BS05 82S 1.14.13.- GO:0004497 ... P20813 28368100
    409965 5uap:B (2.03) BS01 HEM 1.14.13.- GO:0004497 ... P20813 28368100
    409966 5uap:B (2.03) BS02 CM5 1.14.13.- GO:0004497 ... P20813 28368100
    409967 5uap:B (2.03) BS03 82S 1.14.13.- GO:0004497 ... P20813 28368100
    409968 5uaq:D (3.6) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409969 5uaq:D (3.6) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409970 5uaq:D (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409971 5uaq:J (3.6) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409972 5uaq:J (3.6) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409973 5uaq:J (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 28009073
    409974 5uas:A (1.6) BS01 83Y 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409975 5uas:A (1.6) BS02 BDP 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409976 5uas:A (1.6) BS03 83Y 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409977 5uas:A (1.6) BS04 GCD 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409978 5uas:A (1.6) BS05 ZN 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409979 5uas:B (1.6) BS01 83Y 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409980 5uas:B (1.6) BS02 BDP 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409981 5uas:B (1.6) BS03 83Y 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409982 5uas:B (1.6) BS04 GCD 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409983 5uas:B (1.6) BS05 ZN 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    409984 5uat:C (1.92) BS01 NDP 1.5.1.2 GO:0004735 ... P32322 28258219
    409985 5uat:E (1.92) BS01 NDP 1.5.1.2 GO:0004735 ... P32322 28258219
    409986 5uau:A (1.9) BS01 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409987 5uau:A (1.9) BS02 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409988 5uau:B (1.9) BS01 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409989 5uau:B (1.9) BS02 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409990 5uau:B (1.9) BS03 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409991 5uau:C (1.9) BS01 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409992 5uau:C (1.9) BS02 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409993 5uau:D (1.9) BS01 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409994 5uau:D (1.9) BS02 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409995 5uau:D (1.9) BS03 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409996 5uau:E (1.9) BS01 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409997 5uau:E (1.9) BS02 PRO 1.5.1.2 GO:0004735 ... P32322 28258219
    409998 5uav:A (1.85) BS01 NDP 1.5.1.2 GO:0004735 ... P32322 28258219
    409999 5uav:A (1.85) BS02 TFB 1.5.1.2 GO:0004735 ... P32322 28258219
    410000 5uav:B (1.85) BS01 TFB 1.5.1.2 GO:0004735 ... P32322 28258219

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).