SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    411001 5umd:M (3.2) BS01 rna ? GO:0003735 ... Q8IE09 28288098
    411002 5umd:N (3.2) BS01 rna ? GO:0003723 ... Q8ILE8 28288098
    411003 5umd:O (3.2) BS01 rna ? GO:0003735 ... C6KT23 28288098
    411004 5umd:P (3.2) BS01 rna ? GO:0002181 ... C0H4A6 28288098
    411005 5umd:P (3.2) BS02 rna ? GO:0002181 ... C0H4A6 28288098
    411006 5umd:Q (3.2) BS01 rna ? GO:0003735 ... Q8ILV2 28288098
    411007 5umd:Q (3.2) BS02 rna ? GO:0003735 ... Q8ILV2 28288098
    411008 5umd:R (3.2) BS01 rna ? GO:0000027 ... Q8ILL3 28288098
    411009 5umd:R (3.2) BS02 rna ? GO:0000027 ... Q8ILL3 28288098
    411010 5umd:S (3.2) BS01 rna ? GO:0003723 ... C0H5G3 28288098
    411011 5umd:T (3.2) BS01 rna ? GO:0003723 ... C6KSY6 28288098
    411012 5umd:U (3.2) BS01 rna ? GO:0002181 ... Q8IDS6 28288098
    411013 5umd:U (3.2) BS02 rna ? GO:0002181 ... Q8IDS6 28288098
    411014 5umd:V (3.2) BS01 rna ? GO:0003735 ... Q8ILK3 28288098
    411015 5umd:V (3.2) BS02 rna ? GO:0003735 ... Q8ILK3 28288098
    411016 5umd:W (3.2) BS01 rna ? GO:0002181 ... Q8IDI5 28288098
    411017 5umd:W (3.2) BS02 rna ? GO:0002181 ... Q8IDI5 28288098
    411018 5umd:X (3.2) BS01 rna ? GO:0002181 ... Q8IB51 28288098
    411019 5umd:Y (3.2) BS01 rna ? GO:0003735 ... Q8IE82 28288098
    411020 5umd:Y (3.2) BS02 rna ? GO:0003735 ... Q8IE82 28288098
    411021 5umd:Z (3.2) BS01 rna ? GO:0002181 ... O77364 28288098
    411022 5umd:Z (3.2) BS02 rna ? GO:0002181 ... O77364 28288098
    411023 5umd:a (3.2) BS01 rna ? GO:0003735 ... Q8IBY4 28288098
    411024 5umd:b (3.2) BS01 rna ? GO:0002181 ... Q8I713 28288098
    411025 5umd:c (3.2) BS01 rna ? GO:0003723 ... C0H4L5 28288098
    411026 5umd:c (3.2) BS02 rna ? GO:0003723 ... C0H4L5 28288098
    411027 5umd:c (3.2) BS03 ZN ? GO:0003723 ... C0H4L5 28288098
    411028 5umd:d (3.2) BS01 rna ? GO:0003735 ... Q8II62 28288098
    411029 5umd:e (3.2) BS01 rna ? GO:0003735 ... C0H4H3 28288098
    411030 5umd:e (3.2) BS02 rna ? GO:0003735 ... C0H4H3 28288098
    411031 5umd:f (3.2) BS01 rna ? GO:0003735 ... Q8ID50 28288098
    411032 5umd:f (3.2) BS02 ZN ? GO:0003735 ... Q8ID50 28288098
    411033 5umd:g (3.2) BS01 rna ? GO:0003735 ... C6S3G4 28288098
    411034 5umd:h (3.2) BS01 rna ? GO:0003735 ... O96184 28288098
    411035 5umd:h (3.2) BS02 ZN ? GO:0003735 ... O96184 28288098
    411036 5umd:i (3.2) BS01 rna ? GO:0003735 ... O97231 28288098
    411037 5ume:A (2.7) BS01 FAD 1.5.1.54 GO:0004489 ... P45208 N/A
    411038 5ume:B (2.7) BS01 FAD 1.5.1.54 GO:0004489 ... P45208 N/A
    411039 5ume:C (2.7) BS01 FAD 1.5.1.54 GO:0004489 ... P45208 N/A
    411040 5ume:D (2.7) BS01 FAD 1.5.1.54 GO:0004489 ... P45208 N/A
    411041 5ume:E (2.7) BS01 FAD 1.5.1.54 GO:0004489 ... P45208 N/A
    411042 5ume:F (2.7) BS01 FAD 1.5.1.54 GO:0004489 ... P45208 N/A
    411043 5umf:A (1.4) BS01 ZN 5.1.3.1 GO:0004750 ... B4RLV9 N/A
    411044 5umf:B (1.4) BS01 ZN 5.1.3.1 GO:0004750 ... B4RLV9 N/A
    411045 5umf:C (1.4) BS01 ZN 5.1.3.1 GO:0004750 ... B4RLV9 N/A
    411046 5umh:A (1.35) BS01 ZN 1.13.11.1 GO:0003824 ... A0A0H3KXJ8 N/A
    411047 5umh:B (1.35) BS01 ZN 1.13.11.1 GO:0003824 ... A0A0H3KXJ8 N/A
    411048 5uml:A (3.0) BS01 peptide ? GO:0005634 ... O15151 N/A
    411049 5uml:B (3.0) BS01 peptide ? GO:0005634 ... O15151 N/A
    411050 5uml:E (3.0) BS01 peptide ? GO:0005634 ... O15151 N/A
    411051 5uml:G (3.0) BS01 peptide ? GO:0005634 ... O15151 N/A
    411052 5umm:A (1.65) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 N/A
    411053 5umm:C (1.65) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 N/A
    411054 5umw:A (2.27) BS01 RBF ? GO:0004462 ... A0A125SA26 29937405
    411055 5umw:B (2.27) BS01 RBF ? GO:0004462 ... A0A125SA26 29937405 MOAD: Kd=59500nM
    411056 5umw:E (2.27) BS01 RBF ? GO:0004462 ... A0A125SA26 29937405
    411057 5umx:A (1.59) BS01 RBF ? GO:0046872 ... A0A125SA29 29937405
    411058 5umx:B (1.59) BS01 RBF ? GO:0046872 ... A0A125SA29 29937405 MOAD: Kd=1100nM
    411059 5umx:B (1.59) BS02 RBF ? GO:0046872 ... A0A125SA29 29937405 MOAD: Kd=1100nM
    411060 5umy:A (1.78) BS01 TNN ? GO:0046872 ... A0A125SA29 29937405 MOAD: Kd=108nM
    411061 5umy:A (1.78) BS02 TNN ? GO:0046872 ... A0A125SA29 29937405 MOAD: Kd=108nM
    411062 5umy:B (1.78) BS01 TNN ? GO:0046872 ... A0A125SA29 29937405
    411063 5umy:B (1.78) BS02 TNN ? GO:0046872 ... A0A125SA29 29937405
    411064 5umz:B (1.9) BS01 peptide ? GO:0005737 ... P52293 28837617
    411065 5umz:B (1.9) BS02 peptide ? GO:0005737 ... P52293 28837617
    411066 5un1:A (3.6) BS01 GLY ? GO:0005216 ... A0A1L8F5J9 29670280
    411067 5un1:B (3.6) BS01 GLU ? GO:0005216 ... A7XY94 29670280
    411068 5un1:B (3.6) BS02 BMK ? GO:0005216 ... A7XY94 29670280
    411069 5un1:C (3.6) BS01 BMK ? GO:0005216 ... A0A1L8F5J9 29670280
    411070 5un1:D (3.6) BS01 BMK ? GO:0005216 ... A7XY94 29670280
    411071 5un1:D (3.6) BS02 GLU ? GO:0005216 ... A7XY94 29670280
    411072 5un1:G (3.6) BS01 GLY ? GO:0005216 ... A0A1L8F5J9 29670280
    411073 5un1:G (3.6) BS02 GLU ? GO:0005216 ... A0A1L8F5J9 29670280
    411074 5un1:G (3.6) BS03 BMK ? GO:0005216 ... A0A1L8F5J9 29670280
    411075 5un1:H (3.6) BS01 GLU ? GO:0005216 ... A7XY94 29670280
    411076 5un2:A (2.96) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    411077 5un2:A (2.96) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    411078 5un2:A (2.96) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    411079 5un2:A (2.96) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    411080 5un2:A (2.96) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    411081 5un2:A (2.96) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    411082 5un2:A (2.96) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    411083 5un2:A (2.96) BS08 CA ? GO:0005509 ... Q99PF4 30033219
    411084 5un3:A (1.60004) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    411085 5un3:A (1.60004) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    411086 5un3:A (1.60004) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    411087 5un3:A (1.60004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    411088 5un3:A (1.60004) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    411089 5un3:A (1.60004) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    411090 5un3:A (1.60004) BS07 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    411091 5un3:A (1.60004) BS08 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    411092 5un3:A (1.60004) BS09 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    411093 5un3:A (1.60004) BS10 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    411094 5un7:A (2.1) BS01 ZN ? GO:0000723 ... Q9NUX5 28393830
    411095 5un8:A (2.13) BS01 peptide 3.2.1.169 N/A O60502 28319083
    411096 5un8:A (2.13) BS02 peptide 3.2.1.169 N/A O60502 28319083
    411097 5un8:B (2.13) BS01 peptide 3.2.1.169 N/A O60502 28319083
    411098 5un8:B (2.13) BS02 peptide 3.2.1.169 N/A O60502 28319083
    411099 5un8:C (2.13) BS01 peptide 3.2.1.169 N/A O60502 28319083
    411100 5un8:C (2.13) BS02 peptide 3.2.1.169 N/A O60502 28319083
    411101 5un8:D (2.13) BS01 peptide 3.2.1.169 N/A O60502 28319083
    411102 5un8:D (2.13) BS02 peptide 3.2.1.169 N/A O60502 28319083
    411103 5un9:A (2.5) BS01 NHT 3.2.1.169 N/A O60502 28319083 MOAD: Ki=21nM
    BindingDB: Ki=21nM, EC50=13nM, IC50=0.410000nM
    411104 5un9:B (2.5) BS01 NHT 3.2.1.169 N/A O60502 28319083 MOAD: Ki=21nM
    BindingDB: Ki=21nM, EC50=13nM, IC50=0.410000nM
    411105 5una:A (2.55) BS01 SAH 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411106 5una:B (2.55) BS01 SAH 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411107 5una:C (2.55) BS01 peptide 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411108 5una:C (2.55) BS02 SAH 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411109 5una:D (2.55) BS01 SAH 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411110 5una:E (2.55) BS01 SAH 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411111 5una:F (2.55) BS01 SAH 2.1.1.- GO:0008168 ... Q7L2J0 N/A
    411112 5unc:A (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411113 5unc:A (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411114 5unc:B (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411115 5unc:B (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411116 5unc:C (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411117 5unc:C (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411118 5unc:D (1.71) BS01 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411119 5unc:D (1.71) BS02 XYS ? GO:0003824 ... A0A0A0V023 N/A
    411120 5und:A (2.549) BS01 dna ? N/A P49711 28529057
    411121 5und:A (2.549) BS02 dna ? N/A P49711 28529057
    411122 5und:A (2.549) BS03 ZN ? N/A P49711 28529057
    411123 5und:A (2.549) BS04 ZN ? N/A P49711 28529057
    411124 5und:A (2.549) BS05 ZN ? N/A P49711 28529057
    411125 5und:A (2.549) BS06 ZN ? N/A P49711 28529057
    411126 5und:A (2.549) BS07 ZN ? N/A P49711 28529057
    411127 5und:A (2.549) BS08 ZN ? N/A P49711 28529057
    411128 5und:B (2.549) BS01 dna ? N/A P49711 28529057
    411129 5und:B (2.549) BS02 dna ? N/A P49711 28529057
    411130 5und:B (2.549) BS03 ZN ? N/A P49711 28529057
    411131 5und:B (2.549) BS04 ZN ? N/A P49711 28529057
    411132 5und:B (2.549) BS05 ZN ? N/A P49711 28529057
    411133 5und:B (2.549) BS06 ZN ? N/A P49711 28529057
    411134 5und:B (2.549) BS07 ZN ? N/A P49711 28529057
    411135 5unf:A (2.8) BS01 8ES ? GO:0004930 ... P0ABE7
    P50052
    28379944
    411136 5unf:B (2.8) BS01 8ES ? GO:0004930 ... P0ABE7
    P50052
    28379944
    411137 5ung:B (2.8) BS01 8ES ? GO:0004930 ... P0ABE7
    P50052
    28379944
    411138 5unh:A (2.9) BS01 8EM ? GO:0004930 ... P0ABE7
    P50052
    28379944
    411139 5unh:B (2.9) BS01 8EM ? GO:0004930 ... P0ABE7
    P50052
    28379944
    411140 5unj:A (1.959) BS01 peptide ? GO:0003677 ... O00482 28363985
    411141 5unj:A (1.959) BS02 RJW ? GO:0003677 ... O00482 28363985 MOAD: Kd=0.24uM
    BindingDB: Ki=374nM, EC50=600nM
    411142 5unp:A (2.92) BS01 8FY 2.7.12.1 GO:0004672 ... P49760 N/A
    411143 5unp:B (2.92) BS01 8FY 2.7.12.1 GO:0004672 ... P49760 N/A
    411144 5unr:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411145 5unr:A (1.95) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411146 5unr:A (1.95) BS03 8EV 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.035uM
    411147 5unr:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411148 5unr:A (1.95) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411149 5unr:B (1.95) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411150 5unr:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411151 5unr:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411152 5unr:B (1.95) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411153 5unr:B (1.95) BS05 8EV 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.035uM
    411154 5uns:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411155 5uns:A (1.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411156 5uns:A (1.9) BS03 8J4 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.054uM
    411157 5uns:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411158 5uns:A (1.9) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411159 5uns:B (1.9) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411160 5uns:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411161 5uns:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411162 5uns:B (1.9) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411163 5uns:B (1.9) BS05 8J4 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.054uM
    411164 5unt:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411165 5unt:A (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411166 5unt:A (2.05) BS03 8J1 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.039uM
    BindingDB: Ki=39nM
    411167 5unt:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411168 5unt:A (2.05) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411169 5unt:B (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411170 5unt:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411171 5unt:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411172 5unt:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411173 5unt:B (2.05) BS05 8J1 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.039uM
    BindingDB: Ki=39nM
    411174 5unu:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411175 5unu:A (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411176 5unu:A (2.05) BS03 8EY 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.033uM
    BindingDB: Ki=33nM
    411177 5unu:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411178 5unu:A (2.05) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411179 5unu:B (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411180 5unu:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411181 5unu:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411182 5unu:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411183 5unu:B (2.05) BS05 8EY 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.033uM
    BindingDB: Ki=33nM
    411184 5unv:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411185 5unv:A (2.0) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411186 5unv:A (2.0) BS03 8J7 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.033uM
    411187 5unv:A (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411188 5unv:A (2.0) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411189 5unv:B (2.0) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411190 5unv:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411191 5unv:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411192 5unv:B (2.0) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411193 5unv:B (2.0) BS05 8J7 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.033uM
    411194 5unw:A (2.044) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 28422508
    411195 5unw:A (2.044) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411196 5unw:A (2.044) BS03 8F7 1.14.13.39 GO:0004517 ... P29476 28422508 MOAD: Ki=0.036uM
    411197 5unw:A (2.044) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 28422508
    411198 5unw:A (2.044) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411199 5unw:B (2.044) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 28422508
    411200 5unw:B (2.044) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 28422508

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).