SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    413401 5v2c:D (1.9) BS02 BCT 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413402 5v2c:D (1.9) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413403 5v2c:D (1.9) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413404 5v2c:D (1.9) BS05 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413405 5v2c:D (1.9) BS06 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413406 5v2c:D (1.9) BS07 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413407 5v2c:D (1.9) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413408 5v2c:D (1.9) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413409 5v2c:E (1.9) BS01 HEM ? GO:0005506 ... P12238 28741056
    413410 5v2c:F (1.9) BS01 HEM ? GO:0005506 ... P12239 28741056
    413411 5v2c:H (1.9) BS01 CLA ? GO:0009523 ... P19052 28741056
    413412 5v2c:H (1.9) BS02 CLA ? GO:0009523 ... P19052 28741056
    413413 5v2c:H (1.9) BS03 CLA ? GO:0009523 ... P19052 28741056
    413414 5v2c:I (1.9) BS01 CLA ? GO:0005737 ... P12240 28741056
    413415 5v2c:I (1.9) BS02 CLA ? GO:0005737 ... P12240 28741056
    413416 5v2c:J (1.9) BS01 MG ? GO:0009523 ... Q7DGD4 28741056
    413417 5v2c:K (1.9) BS01 peptide ? GO:0005737 ... P19054 28741056
    413418 5v2c:K (1.9) BS02 CLA ? GO:0005737 ... P19054 28741056
    413419 5v2c:K (1.9) BS03 CLA ? GO:0005737 ... P19054 28741056
    413420 5v2c:M (1.9) BS01 BCT ? GO:0005737 ... P12312 28741056
    413421 5v2c:O (1.9) BS01 CA ? GO:0009523 ... D0VWR2 28741056
    413422 5v2c:V (1.9) BS01 HEC ? GO:0005506 ... P0A387 28741056
    413423 5v2c:X (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 28741056
    413424 5v2c:Z (1.9) BS01 peptide ? GO:0009523 ... D0VWR5 28741056
    413425 5v2c:a (1.9) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28741056
    413426 5v2c:a (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28741056
    413427 5v2c:a (1.9) BS03 BCT 1.10.3.9 GO:0005506 ... P51765 28741056
    413428 5v2c:a (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    413429 5v2c:a (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    413430 5v2c:a (1.9) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 28741056
    413431 5v2c:a (1.9) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    413432 5v2c:a (1.9) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    413433 5v2c:a (1.9) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 28741056
    413434 5v2c:a (1.9) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28741056
    413435 5v2c:b (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 28741056
    413436 5v2c:b (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 28741056
    413437 5v2c:b (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 28741056
    413438 5v2c:b (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 28741056
    413439 5v2c:b (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 28741056
    413440 5v2c:b (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 28741056
    413441 5v2c:b (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 28741056
    413442 5v2c:b (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 28741056
    413443 5v2c:b (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 28741056
    413444 5v2c:b (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 28741056
    413445 5v2c:b (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 28741056
    413446 5v2c:b (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 28741056
    413447 5v2c:b (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 28741056
    413448 5v2c:b (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 28741056
    413449 5v2c:b (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 28741056
    413450 5v2c:b (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 28741056
    413451 5v2c:c (1.9) BS01 OEX ? GO:0005737 ... D0VWR7 28741056
    413452 5v2c:c (1.9) BS02 CLA ? GO:0005737 ... D0VWR7 28741056
    413453 5v2c:c (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 28741056
    413454 5v2c:c (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 28741056
    413455 5v2c:c (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 28741056
    413456 5v2c:c (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 28741056
    413457 5v2c:c (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 28741056
    413458 5v2c:c (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 28741056
    413459 5v2c:c (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 28741056
    413460 5v2c:c (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 28741056
    413461 5v2c:c (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 28741056
    413462 5v2c:c (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 28741056
    413463 5v2c:c (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 28741056
    413464 5v2c:c (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 28741056
    413465 5v2c:c (1.9) BS15 CA ? GO:0005737 ... D0VWR7 28741056
    413466 5v2c:d (1.9) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413467 5v2c:d (1.9) BS02 BCT 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413468 5v2c:d (1.9) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413469 5v2c:d (1.9) BS04 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413470 5v2c:d (1.9) BS05 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413471 5v2c:d (1.9) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413472 5v2c:d (1.9) BS07 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413473 5v2c:d (1.9) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413474 5v2c:d (1.9) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413475 5v2c:d (1.9) BS10 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28741056
    413476 5v2c:e (1.9) BS01 HEM ? GO:0005506 ... P12238 28741056
    413477 5v2c:f (1.9) BS01 HEM ? GO:0005506 ... P12239 28741056
    413478 5v2c:h (1.9) BS01 CLA ? GO:0009523 ... P19052 28741056
    413479 5v2c:h (1.9) BS02 CLA ? GO:0009523 ... P19052 28741056
    413480 5v2c:h (1.9) BS03 CLA ? GO:0009523 ... P19052 28741056
    413481 5v2c:h (1.9) BS04 CLA ? GO:0009523 ... P19052 28741056
    413482 5v2c:i (1.9) BS01 CLA ? GO:0005737 ... P12240 28741056
    413483 5v2c:j (1.9) BS01 MG ? GO:0009523 ... Q7DGD4 28741056
    413484 5v2c:k (1.9) BS01 peptide ? GO:0005737 ... P19054 28741056
    413485 5v2c:k (1.9) BS02 CLA ? GO:0005737 ... P19054 28741056
    413486 5v2c:k (1.9) BS03 CLA ? GO:0005737 ... P19054 28741056
    413487 5v2c:o (1.9) BS01 CA ? GO:0009523 ... D0VWR2 28741056
    413488 5v2c:v (1.9) BS01 HEC ? GO:0005506 ... P0A387 28741056
    413489 5v2c:x (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 28741056
    413490 5v2c:z (1.9) BS01 peptide ? GO:0009523 ... D0VWR5 28741056
    413491 5v2d:A (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    413492 5v2d:B (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    413493 5v2d:C (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    413494 5v2d:D (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    413495 5v2j:A (1.8) BS01 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413496 5v2j:A (1.8) BS02 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413497 5v2j:A (1.8) BS03 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413498 5v2j:A (1.8) BS04 UDP 2.4.1.- GO:0005829 ... O22822 28425481
    413499 5v2j:A (1.8) BS05 7WV 2.4.1.- GO:0005829 ... O22822 28425481
    413500 5v2j:B (1.8) BS01 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413501 5v2j:B (1.8) BS02 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413502 5v2j:B (1.8) BS03 UDP 2.4.1.- GO:0005829 ... O22822 28425481
    413503 5v2j:B (1.8) BS04 7WV 2.4.1.- GO:0005829 ... O22822 28425481
    413504 5v2k:A (2.002) BS01 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413505 5v2k:A (2.002) BS02 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413506 5v2k:A (2.002) BS03 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413507 5v2k:A (2.002) BS04 UDP 2.4.1.- GO:0005829 ... O22822 28425481
    413508 5v2k:A (2.002) BS05 7WV 2.4.1.- GO:0005829 ... O22822 28425481
    413509 5v2k:B (2.002) BS01 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413510 5v2k:B (2.002) BS02 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413511 5v2k:B (2.002) BS03 BGC 2.4.1.- GO:0005829 ... O22822 28425481
    413512 5v2k:B (2.002) BS04 UDP 2.4.1.- GO:0005829 ... O22822 28425481
    413513 5v2k:B (2.002) BS05 7WV 2.4.1.- GO:0005829 ... O22822 28425481
    413514 5v2l:A (2.1) BS01 ATP 4.1.1.33 GO:0004163 ... Q837E0 29025876
    413515 5v2l:A (2.1) BS02 PO4 4.1.1.33 GO:0004163 ... Q837E0 29025876
    413516 5v2o:A (1.2) BS01 TMM N/A N/A N/A 28973862
    413517 5v2o:B (1.2) BS01 TMM N/A N/A N/A 28973862
    413518 5v2o:C (1.2) BS01 TMM N/A N/A N/A 28973862
    413519 5v2o:D (1.2) BS01 TMM N/A N/A N/A 28973862
    413520 5v2o:E (1.2) BS01 TMM N/A N/A N/A 28973862
    413521 5v2o:F (1.2) BS01 TMM N/A N/A N/A 28973862
    413522 5v2p:A (2.0) BS01 peptide ? GO:0005245 ... Q8VGC3 28278376
    413523 5v2q:A (1.7) BS01 peptide ? GO:0005245 ... Q8VGC3 28278376
    413524 5v2t:A (1.227) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413525 5v2w:A (2.3) BS01 ZN 4.4.1.21 GO:0005506 ... Q8Z4D7 N/A
    413526 5v2w:B (2.3) BS01 ZN 4.4.1.21 GO:0005506 ... Q8Z4D7 N/A
    413527 5v2x:A (1.847) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413528 5v2x:A (1.847) BS02 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413529 5v2x:A (1.847) BS03 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413530 5v2x:B (1.847) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413531 5v2x:B (1.847) BS02 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413532 5v2x:B (1.847) BS03 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413533 5v2y:A (1.428) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413534 5v2y:A (1.428) BS02 ARG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413535 5v2y:A (1.428) BS03 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413536 5v2z:A (1.23) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413537 5v2z:A (1.23) BS02 OOG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413538 5v2z:A (1.23) BS03 ARG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413539 5v31:A (2.45) BS01 ARG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413540 5v31:A (2.45) BS02 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413541 5v32:A (1.486) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413542 5v33:L (3.487) BS01 BPH ? GO:0009772 ... P0C0Y8 28469762
    413543 5v33:L (3.487) BS02 BCL ? GO:0009772 ... P0C0Y8 28469762
    413544 5v33:L (3.487) BS03 BCL ? GO:0009772 ... P0C0Y8 28469762
    413545 5v33:L (3.487) BS04 BCL ? GO:0009772 ... P0C0Y8 28469762
    413546 5v33:L (3.487) BS05 FE ? GO:0009772 ... P0C0Y8 28469762
    413547 5v33:L (3.487) BS06 U10 ? GO:0009772 ... P0C0Y8 28469762
    413548 5v33:L (3.487) BS07 BPH ? GO:0009772 ... P0C0Y8 28469762
    413549 5v33:M (3.487) BS01 BPH ? GO:0009772 ... P0C0Y9 28469762
    413550 5v33:M (3.487) BS02 BCL ? GO:0009772 ... P0C0Y9 28469762
    413551 5v33:M (3.487) BS03 FE ? GO:0009772 ... P0C0Y9 28469762
    413552 5v33:M (3.487) BS04 U10 ? GO:0009772 ... P0C0Y9 28469762
    413553 5v33:M (3.487) BS05 BCL ? GO:0009772 ... P0C0Y9 28469762
    413554 5v33:M (3.487) BS06 BPH ? GO:0009772 ... P0C0Y9 28469762
    413555 5v34:A (1.48) BS01 ARG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413556 5v34:A (1.48) BS02 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    413557 5v35:A (2.5) BS01 FAR ? GO:0003755 ... Q9NZN9 28739921
    413558 5v36:A (1.88) BS01 FAD 1.8.1.7 GO:0000166 ... Q8DUR5 N/A
    413559 5v36:A (1.88) BS02 BDF 1.8.1.7 GO:0000166 ... Q8DUR5 N/A
    413560 5v36:B (1.88) BS01 FAD 1.8.1.7 GO:0000166 ... Q8DUR5 N/A
    413561 5v36:B (1.88) BS02 BDF 1.8.1.7 GO:0000166 ... Q8DUR5 N/A
    413562 5v37:A (1.42) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    413563 5v37:A (1.42) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    413564 5v37:A (1.42) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    413565 5v37:A (1.42) BS04 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    413566 5v37:A (1.42) BS05 8WD 2.1.1.354 GO:0000978 ... Q9H7B4 29856759 BindingDB: IC50=1.30nM
    413567 5v39:A (2.2) BS01 8VM ? GO:0003677 ... P11473 29030554
    413568 5v3a:A (2.0) BS01 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413569 5v3a:A (2.0) BS02 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413570 5v3a:A (2.0) BS03 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413571 5v3a:A (2.0) BS04 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413572 5v3a:B (2.0) BS01 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413573 5v3a:B (2.0) BS02 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413574 5v3a:B (2.0) BS03 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413575 5v3a:B (2.0) BS04 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413576 5v3a:C (2.0) BS01 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413577 5v3a:C (2.0) BS02 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413578 5v3a:C (2.0) BS03 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413579 5v3a:C (2.0) BS04 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413580 5v3a:D (2.0) BS01 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413581 5v3a:D (2.0) BS02 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413582 5v3a:D (2.0) BS03 COA 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413583 5v3a:D (2.0) BS04 GDP 3.1.2.- GO:0005737 ... A0A0Y5D4F5 28972175
    413584 5v3c:A (1.419) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 31808981
    413585 5v3c:A (1.419) BS02 AMH 2.4.2.29 GO:0002099 ... P28720 31808981
    413586 5v3d:A (1.539) BS01 MN ? N/A W8UNW6 28874374
    413587 5v3d:A (1.539) BS02 FCN ? N/A W8UNW6 28874374
    413588 5v3d:A (1.539) BS03 FCN ? N/A W8UNW6 28874374
    413589 5v3d:B (1.539) BS01 FCN ? N/A W8UNW6 28874374
    413590 5v3d:B (1.539) BS02 MN ? N/A W8UNW6 28874374
    413591 5v3d:B (1.539) BS03 FCN ? N/A W8UNW6 28874374
    413592 5v3g:A (2.416) BS01 dna 2.1.1.43 N/A D9IWL3 28801461
    413593 5v3g:A (2.416) BS02 dna 2.1.1.43 N/A D9IWL3 28801461
    413594 5v3g:A (2.416) BS03 peptide 2.1.1.43 N/A D9IWL3 28801461
    413595 5v3g:A (2.416) BS04 ZN 2.1.1.43 N/A D9IWL3 28801461
    413596 5v3g:A (2.416) BS05 ZN 2.1.1.43 N/A D9IWL3 28801461
    413597 5v3g:A (2.416) BS06 ZN 2.1.1.43 N/A D9IWL3 28801461
    413598 5v3g:A (2.416) BS07 ZN 2.1.1.43 N/A D9IWL3 28801461
    413599 5v3g:A (2.416) BS08 ZN 2.1.1.43 N/A D9IWL3 28801461
    413600 5v3g:A (2.416) BS09 ZN 2.1.1.43 N/A D9IWL3 28801461

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).