SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    414001 5v8f:7 (3.9) BS01 AGS 3.6.4.12 GO:0000727 ... P38132 28191893
    414002 5v8f:7 (3.9) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 28191893
    414003 5v8f:9 (3.9) BS01 dna ? GO:0000082 ... P09119 28191893
    414004 5v8f:9 (3.9) BS02 AGS ? GO:0000082 ... P09119 28191893
    414005 5v8f:A (3.9) BS01 AGS ? GO:0003677 ... P54784 28191893
    414006 5v8f:B (3.9) BS01 dna ? GO:0000781 ... P32833 28191893
    414007 5v8f:D (3.9) BS01 AGS ? GO:0000808 ... P54791 28191893
    414008 5v8f:E (3.9) BS01 AGS ? GO:0000808 ... P50874 28191893
    414009 5v8i:10 (3.25) BS01 rna ? GO:0003735 ... Q72HR3 N/A
    414010 5v8i:10 (3.25) BS02 rna ? GO:0003735 ... Q72HR3 N/A
    414011 5v8i:10 (3.25) BS03 MG ? GO:0003735 ... Q72HR3 N/A
    414012 5v8i:11 (3.25) BS01 rna ? GO:0003735 ... Q72G84 N/A
    414013 5v8i:11 (3.25) BS02 MG ? GO:0003735 ... Q72G84 N/A
    414014 5v8i:12 (3.25) BS01 rna ? GO:0003735 ... Q72I12 N/A
    414015 5v8i:13 (3.25) BS01 rna ? GO:0003735 ... Q72I22 N/A
    414016 5v8i:13 (3.25) BS02 rna ? GO:0003735 ... Q72I22 N/A
    414017 5v8i:14 (3.25) BS01 rna ? GO:0003735 ... Q72JR0 N/A
    414018 5v8i:14 (3.25) BS02 ZN ? GO:0003735 ... Q72JR0 N/A
    414019 5v8i:15 (3.25) BS01 rna ? GO:0003735 ... P62652 N/A
    414020 5v8i:15 (3.25) BS02 ZN ? GO:0003735 ... P62652 N/A
    414021 5v8i:16 (3.25) BS01 rna ? GO:0003735 ... Q72GW3 N/A
    414022 5v8i:16 (3.25) BS02 ZN ? GO:0003735 ... Q72GW3 N/A
    414023 5v8i:17 (3.25) BS01 rna ? GO:0003735 ... P80340 N/A
    414024 5v8i:17 (3.25) BS02 MG ? GO:0003735 ... P80340 N/A
    414025 5v8i:17 (3.25) BS03 MG ? GO:0003735 ... P80340 N/A
    414026 5v8i:18 (3.25) BS01 rna ? GO:0003735 ... Q72L77 N/A
    414027 5v8i:19 (3.25) BS01 rna ? GO:0003735 ... Q72I28 N/A
    414028 5v8i:19 (3.25) BS02 ZN ? GO:0003735 ... Q72I28 N/A
    414029 5v8i:1D (3.25) BS01 rna ? GO:0002181 ... Q72I07 N/A
    414030 5v8i:1D (3.25) BS02 rna ? GO:0002181 ... Q72I07 N/A
    414031 5v8i:1D (3.25) BS03 MG ? GO:0002181 ... Q72I07 N/A
    414032 5v8i:1D (3.25) BS04 MG ? GO:0002181 ... Q72I07 N/A
    414033 5v8i:1D (3.25) BS05 MG ? GO:0002181 ... Q72I07 N/A
    414034 5v8i:1D (3.25) BS06 MG ? GO:0002181 ... Q72I07 N/A
    414035 5v8i:1E (3.25) BS01 rna ? GO:0003735 ... Q72I04 N/A
    414036 5v8i:1E (3.25) BS02 MG ? GO:0003735 ... Q72I04 N/A
    414037 5v8i:1E (3.25) BS03 MG ? GO:0003735 ... Q72I04 N/A
    414038 5v8i:1F (3.25) BS01 rna ? GO:0003735 ... Q72I05 N/A
    414039 5v8i:1F (3.25) BS02 MG ? GO:0003735 ... Q72I05 N/A
    414040 5v8i:1F (3.25) BS03 MG ? GO:0003735 ... Q72I05 N/A
    414041 5v8i:1F (3.25) BS04 MG ? GO:0003735 ... Q72I05 N/A
    414042 5v8i:1F (3.25) BS05 MG ? GO:0003735 ... Q72I05 N/A
    414043 5v8i:1F (3.25) BS06 MG ? GO:0003735 ... Q72I05 N/A
    414044 5v8i:1F (3.25) BS07 MG ? GO:0003735 ... Q72I05 N/A
    414045 5v8i:1G (3.25) BS01 rna ? GO:0000049 ... Q72I16 N/A
    414046 5v8i:1G (3.25) BS02 rna ? GO:0000049 ... Q72I16 N/A
    414047 5v8i:1G (3.25) BS03 MG ? GO:0000049 ... Q72I16 N/A
    414048 5v8i:1G (3.25) BS04 MG ? GO:0000049 ... Q72I16 N/A
    414049 5v8i:1G (3.25) BS05 MG ? GO:0000049 ... Q72I16 N/A
    414050 5v8i:1H (3.25) BS01 rna ? GO:0002181 ... Q72I19 N/A
    414051 5v8i:1I (3.25) BS01 rna ? GO:0003735 ... Q72GV5 N/A
    414052 5v8i:1N (3.25) BS01 rna ? GO:0003729 ... Q72IN1 N/A
    414053 5v8i:1N (3.25) BS02 MG ? GO:0003729 ... Q72IN1 N/A
    414054 5v8i:1N (3.25) BS03 MG ? GO:0003729 ... Q72IN1 N/A
    414055 5v8i:1O (3.25) BS01 rna ? GO:0003735 ... Q72I14 N/A
    414056 5v8i:1O (3.25) BS02 rna ? GO:0003735 ... Q72I14 N/A
    414057 5v8i:1P (3.25) BS01 rna ? GO:0003735 ... Q72I23 N/A
    414058 5v8i:1Q (3.25) BS01 rna ? GO:0000049 ... Q72I11 N/A
    414059 5v8i:1Q (3.25) BS02 rna ? GO:0000049 ... Q72I11 N/A
    414060 5v8i:1Q (3.25) BS03 MG ? GO:0000049 ... Q72I11 N/A
    414061 5v8i:1Q (3.25) BS04 MG ? GO:0000049 ... Q72I11 N/A
    414062 5v8i:1R (3.25) BS01 rna ? GO:0003735 ... Q72I33 N/A
    414063 5v8i:1R (3.25) BS02 MG ? GO:0003735 ... Q72I33 N/A
    414064 5v8i:1R (3.25) BS03 MG ? GO:0003735 ... Q72I33 N/A
    414065 5v8i:1R (3.25) BS04 MG ? GO:0003735 ... Q72I33 N/A
    414066 5v8i:1S (3.25) BS01 rna ? GO:0003735 ... Q72I20 N/A
    414067 5v8i:1S (3.25) BS02 rna ? GO:0003735 ... Q72I20 N/A
    414068 5v8i:1T (3.25) BS01 rna ? GO:0003735 ... Q72JU9 N/A
    414069 5v8i:1T (3.25) BS02 rna ? GO:0003735 ... Q72JU9 N/A
    414070 5v8i:1U (3.25) BS01 rna ? GO:0000027 ... Q72L76 N/A
    414071 5v8i:1U (3.25) BS02 MG ? GO:0000027 ... Q72L76 N/A
    414072 5v8i:1U (3.25) BS03 MG ? GO:0000027 ... Q72L76 N/A
    414073 5v8i:1V (3.25) BS01 rna ? GO:0003723 ... Q72HR2 N/A
    414074 5v8i:1V (3.25) BS02 MG ? GO:0003723 ... Q72HR2 N/A
    414075 5v8i:1V (3.25) BS03 MG ? GO:0003723 ... Q72HR2 N/A
    414076 5v8i:1V (3.25) BS04 MG ? GO:0003723 ... Q72HR2 N/A
    414077 5v8i:1W (3.25) BS01 rna ? GO:0003735 ... Q72I09 N/A
    414078 5v8i:1W (3.25) BS02 MG ? GO:0003735 ... Q72I09 N/A
    414079 5v8i:1X (3.25) BS01 rna ? GO:0003735 ... Q72I06 N/A
    414080 5v8i:1Y (3.25) BS01 rna ? GO:0003723 ... Q72I15 N/A
    414081 5v8i:1Y (3.25) BS02 ZN ? GO:0003723 ... Q72I15 N/A
    414082 5v8i:1Z (3.25) BS01 rna ? GO:0003723 ... Q72IA7 N/A
    414083 5v8i:1Z (3.25) BS02 rna ? GO:0003723 ... Q72IA7 N/A
    414084 5v8i:1b (3.25) BS01 rna ? GO:0003735 ... P62662 N/A
    414085 5v8i:1b (3.25) BS02 MG ? GO:0003735 ... P62662 N/A
    414086 5v8i:1c (3.25) BS01 rna ? GO:0003676 ... P62663 N/A
    414087 5v8i:1d (3.25) BS01 rna ? GO:0003723 ... P62664 N/A
    414088 5v8i:1d (3.25) BS02 SF4 ? GO:0003723 ... P62664 N/A
    414089 5v8i:1e (3.25) BS01 rna ? GO:0003723 ... P62665 N/A
    414090 5v8i:1e (3.25) BS02 MG ? GO:0003723 ... P62665 N/A
    414091 5v8i:1f (3.25) BS01 rna ? GO:0003735 ... P62666 N/A
    414092 5v8i:1g (3.25) BS01 rna ? GO:0000049 ... P62667 N/A
    414093 5v8i:1h (3.25) BS01 rna ? GO:0003735 ... P62668 N/A
    414094 5v8i:1i (3.25) BS01 rna ? GO:0000049 ... P62669 N/A
    414095 5v8i:1j (3.25) BS01 rna ? GO:0000049 ... P62653 N/A
    414096 5v8i:1k (3.25) BS01 rna ? GO:0003735 ... P62654 N/A
    414097 5v8i:1k (3.25) BS02 MG ? GO:0003735 ... P62654 N/A
    414098 5v8i:1l (3.25) BS01 rna ? GO:0000049 ... H7GHW0 N/A
    414099 5v8i:1l (3.25) BS02 MG ? GO:0000049 ... H7GHW0 N/A
    414100 5v8i:1m (3.25) BS01 rna ? GO:0000049 ... P62655 N/A
    414101 5v8i:1m (3.25) BS02 MG ? GO:0000049 ... P62655 N/A
    414102 5v8i:1n (3.25) BS01 rna ? GO:0003735 ... P62656 N/A
    414103 5v8i:1n (3.25) BS02 ZN ? GO:0003735 ... P62656 N/A
    414104 5v8i:1o (3.25) BS01 rna ? GO:0003735 ... P62657 N/A
    414105 5v8i:1o (3.25) BS02 rna ? GO:0003735 ... P62657 N/A
    414106 5v8i:1p (3.25) BS01 rna ? GO:0003735 ... P62238 N/A
    414107 5v8i:1r (3.25) BS01 rna ? GO:0003735 ... P62659 N/A
    414108 5v8i:1s (3.25) BS01 rna ? GO:0000028 ... P62660 N/A
    414109 5v8i:1t (3.25) BS01 rna ? GO:0003723 ... P62661 N/A
    414110 5v8i:1y (3.25) BS01 rna ? GO:0005515 ... P0AD49 N/A
    414111 5v8i:1y (3.25) BS02 MG ? GO:0005515 ... P0AD49 N/A
    414112 5v8i:1y (3.25) BS03 MG ? GO:0005515 ... P0AD49 N/A
    414113 5v8i:20 (3.25) BS01 rna ? GO:0003735 ... Q72HR3 N/A
    414114 5v8i:20 (3.25) BS02 rna ? GO:0003735 ... Q72HR3 N/A
    414115 5v8i:21 (3.25) BS01 rna ? GO:0003735 ... Q72G84 N/A
    414116 5v8i:22 (3.25) BS01 rna ? GO:0003735 ... Q72I12 N/A
    414117 5v8i:23 (3.25) BS01 rna ? GO:0003735 ... Q72I22 N/A
    414118 5v8i:23 (3.25) BS02 rna ? GO:0003735 ... Q72I22 N/A
    414119 5v8i:23 (3.25) BS03 MG ? GO:0003735 ... Q72I22 N/A
    414120 5v8i:24 (3.25) BS01 rna ? GO:0003735 ... Q72JR0 N/A
    414121 5v8i:24 (3.25) BS02 ZN ? GO:0003735 ... Q72JR0 N/A
    414122 5v8i:25 (3.25) BS01 rna ? GO:0003735 ... P62652 N/A
    414123 5v8i:25 (3.25) BS02 MG ? GO:0003735 ... P62652 N/A
    414124 5v8i:25 (3.25) BS03 ZN ? GO:0003735 ... P62652 N/A
    414125 5v8i:26 (3.25) BS01 rna ? GO:0003735 ... Q72GW3 N/A
    414126 5v8i:26 (3.25) BS02 ZN ? GO:0003735 ... Q72GW3 N/A
    414127 5v8i:27 (3.25) BS01 rna ? GO:0003735 ... P80340 N/A
    414128 5v8i:28 (3.25) BS01 rna ? GO:0003735 ... Q72L77 N/A
    414129 5v8i:29 (3.25) BS01 rna ? GO:0003735 ... Q72I28 N/A
    414130 5v8i:29 (3.25) BS02 ZN ? GO:0003735 ... Q72I28 N/A
    414131 5v8i:2D (3.25) BS01 rna ? GO:0002181 ... Q72I07 N/A
    414132 5v8i:2D (3.25) BS02 rna ? GO:0002181 ... Q72I07 N/A
    414133 5v8i:2D (3.25) BS03 MG ? GO:0002181 ... Q72I07 N/A
    414134 5v8i:2D (3.25) BS04 MG ? GO:0002181 ... Q72I07 N/A
    414135 5v8i:2D (3.25) BS05 MG ? GO:0002181 ... Q72I07 N/A
    414136 5v8i:2D (3.25) BS06 MG ? GO:0002181 ... Q72I07 N/A
    414137 5v8i:2E (3.25) BS01 rna ? GO:0003735 ... Q72I04 N/A
    414138 5v8i:2E (3.25) BS02 MG ? GO:0003735 ... Q72I04 N/A
    414139 5v8i:2F (3.25) BS01 rna ? GO:0003735 ... Q72I05 N/A
    414140 5v8i:2F (3.25) BS02 MG ? GO:0003735 ... Q72I05 N/A
    414141 5v8i:2G (3.25) BS01 rna ? GO:0000049 ... Q72I16 N/A
    414142 5v8i:2G (3.25) BS02 rna ? GO:0000049 ... Q72I16 N/A
    414143 5v8i:2G (3.25) BS03 MG ? GO:0000049 ... Q72I16 N/A
    414144 5v8i:2G (3.25) BS04 MG ? GO:0000049 ... Q72I16 N/A
    414145 5v8i:2H (3.25) BS01 rna ? GO:0002181 ... Q72I19 N/A
    414146 5v8i:2I (3.25) BS01 rna ? GO:0003735 ... Q72GV5 N/A
    414147 5v8i:2N (3.25) BS01 rna ? GO:0003729 ... Q72IN1 N/A
    414148 5v8i:2O (3.25) BS01 rna ? GO:0003735 ... Q72I14 N/A
    414149 5v8i:2O (3.25) BS02 rna ? GO:0003735 ... Q72I14 N/A
    414150 5v8i:2P (3.25) BS01 rna ? GO:0003735 ... Q72I23 N/A
    414151 5v8i:2Q (3.25) BS01 rna ? GO:0000049 ... Q72I11 N/A
    414152 5v8i:2Q (3.25) BS02 rna ? GO:0000049 ... Q72I11 N/A
    414153 5v8i:2R (3.25) BS01 rna ? GO:0003735 ... Q72I33 N/A
    414154 5v8i:2R (3.25) BS02 MG ? GO:0003735 ... Q72I33 N/A
    414155 5v8i:2S (3.25) BS01 rna ? GO:0003735 ... Q72I20 N/A
    414156 5v8i:2S (3.25) BS02 rna ? GO:0003735 ... Q72I20 N/A
    414157 5v8i:2T (3.25) BS01 rna ? GO:0003735 ... Q72JU9 N/A
    414158 5v8i:2T (3.25) BS02 rna ? GO:0003735 ... Q72JU9 N/A
    414159 5v8i:2U (3.25) BS01 rna ? GO:0000027 ... Q72L76 N/A
    414160 5v8i:2V (3.25) BS01 rna ? GO:0003723 ... Q72HR2 N/A
    414161 5v8i:2V (3.25) BS02 MG ? GO:0003723 ... Q72HR2 N/A
    414162 5v8i:2V (3.25) BS03 MG ? GO:0003723 ... Q72HR2 N/A
    414163 5v8i:2W (3.25) BS01 rna ? GO:0003735 ... Q72I09 N/A
    414164 5v8i:2W (3.25) BS02 MG ? GO:0003735 ... Q72I09 N/A
    414165 5v8i:2X (3.25) BS01 rna ? GO:0003735 ... Q72I06 N/A
    414166 5v8i:2Y (3.25) BS01 rna ? GO:0003723 ... Q72I15 N/A
    414167 5v8i:2Y (3.25) BS02 ZN ? GO:0003723 ... Q72I15 N/A
    414168 5v8i:2Z (3.25) BS01 rna ? GO:0003723 ... Q72IA7 N/A
    414169 5v8i:2Z (3.25) BS02 rna ? GO:0003723 ... Q72IA7 N/A
    414170 5v8i:2b (3.25) BS01 rna ? GO:0003735 ... P62662 N/A
    414171 5v8i:2c (3.25) BS01 rna ? GO:0003676 ... P62663 N/A
    414172 5v8i:2d (3.25) BS01 rna ? GO:0003723 ... P62664 N/A
    414173 5v8i:2d (3.25) BS02 SF4 ? GO:0003723 ... P62664 N/A
    414174 5v8i:2e (3.25) BS01 rna ? GO:0003723 ... P62665 N/A
    414175 5v8i:2f (3.25) BS01 rna ? GO:0003735 ... P62666 N/A
    414176 5v8i:2f (3.25) BS02 MG ? GO:0003735 ... P62666 N/A
    414177 5v8i:2g (3.25) BS01 rna ? GO:0000049 ... P62667 N/A
    414178 5v8i:2h (3.25) BS01 rna ? GO:0003735 ... P62668 N/A
    414179 5v8i:2i (3.25) BS01 rna ? GO:0000049 ... P62669 N/A
    414180 5v8i:2j (3.25) BS01 rna ? GO:0000049 ... P62653 N/A
    414181 5v8i:2k (3.25) BS01 rna ? GO:0003735 ... P62654 N/A
    414182 5v8i:2l (3.25) BS01 rna ? GO:0000049 ... H7GHW0 N/A
    414183 5v8i:2m (3.25) BS01 rna ? GO:0000049 ... P62655 N/A
    414184 5v8i:2n (3.25) BS01 rna ? GO:0003735 ... P62656 N/A
    414185 5v8i:2n (3.25) BS02 ZN ? GO:0003735 ... P62656 N/A
    414186 5v8i:2o (3.25) BS01 rna ? GO:0003735 ... P62657 N/A
    414187 5v8i:2o (3.25) BS02 rna ? GO:0003735 ... P62657 N/A
    414188 5v8i:2p (3.25) BS01 rna ? GO:0003735 ... P62238 N/A
    414189 5v8i:2r (3.25) BS01 rna ? GO:0003735 ... P62659 N/A
    414190 5v8i:2s (3.25) BS01 rna ? GO:0000028 ... P62660 N/A
    414191 5v8i:2t (3.25) BS01 rna ? GO:0003723 ... P62661 N/A
    414192 5v8i:2t (3.25) BS02 MG ? GO:0003723 ... P62661 N/A
    414193 5v8i:2y (3.25) BS01 rna ? GO:0005515 ... P0AD49 N/A
    414194 5v8k:A (2.2) BS01 peptide ? GO:0009579 ... Q1MX24 28751471
    414195 5v8k:A (2.2) BS02 GB0 ? GO:0009579 ... Q1MX24 28751471
    414196 5v8k:A (2.2) BS03 GBF ? GO:0009579 ... Q1MX24 28751471
    414197 5v8k:A (2.2) BS04 AOH ? GO:0009579 ... Q1MX24 28751471
    414198 5v8k:A (2.2) BS05 GBF ? GO:0009579 ... Q1MX24 28751471
    414199 5v8k:A (2.2) BS06 GB0 ? GO:0009579 ... Q1MX24 28751471
    414200 5v8k:A (2.2) BS07 GBF ? GO:0009579 ... Q1MX24 28751471
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).