SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    414401 5v9o:A (1.56) BS02 91G 3.6.5.2 GO:0003924 ... P01116 28781124
    414402 5v9p:A (3.0) BS01 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    414403 5v9p:A (3.0) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    414404 5v9p:A (3.0) BS03 90S 1.14.11.67 GO:0003677 ... P29375 28512031 BindingDB: IC50=0.740nM
    414405 5v9t:A (3.05) BS01 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    414406 5v9t:A (3.05) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    414407 5v9t:A (3.05) BS03 90V 1.14.11.67 GO:0003677 ... P29375 28512031 BindingDB: IC50=570nM, Kd=2400nM, EC50=960nM
    414408 5v9t:B (3.05) BS01 peptide 1.14.11.67 GO:0003677 ... P29375 28512031
    414409 5v9t:B (3.05) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    414410 5v9t:B (3.05) BS03 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    414411 5v9t:B (3.05) BS04 90V 1.14.11.67 GO:0003677 ... P29375 28512031 BindingDB: IC50=570nM, Kd=2400nM, EC50=960nM
    414412 5v9u:A (1.38) BS01 91S 3.6.5.2 GO:0003924 ... P01116 29373830
    414413 5v9u:A (1.38) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 29373830
    414414 5v9u:B (1.38) BS01 91S 3.6.5.2 GO:0003924 ... P01116 29373830
    414415 5v9u:B (1.38) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 29373830
    414416 5v9x:A (2.797) BS01 dna 3.6.4.13 GO:0003676 ... A0QT91 29165676
    414417 5v9x:A (2.797) BS02 ANP 3.6.4.13 GO:0003676 ... A0QT91 29165676
    414418 5va0:A (2.295) BS01 dna ? GO:0003700 ... P04150 28591827
    414419 5va0:A (2.295) BS02 dna ? GO:0003700 ... P04150 28591827
    414420 5va0:A (2.295) BS03 ZN ? GO:0003700 ... P04150 28591827
    414421 5va0:A (2.295) BS04 ZN ? GO:0003700 ... P04150 28591827
    414422 5va0:B (2.295) BS01 dna ? GO:0003700 ... P04150 28591827
    414423 5va0:B (2.295) BS02 ZN ? GO:0003700 ... P04150 28591827
    414424 5va0:B (2.295) BS03 ZN ? GO:0003700 ... P04150 28591827
    414425 5va4:A (2.306) BS01 ZN 5.2.1.8
    6.1.1.11
    GO:0008270 ... P34945
    Q68KK2
    29187540
    414426 5va4:A (2.306) BS02 ZN 5.2.1.8
    6.1.1.11
    GO:0008270 ... P34945
    Q68KK2
    29187540
    414427 5va4:A (2.306) BS03 ZN 5.2.1.8
    6.1.1.11
    GO:0008270 ... P34945
    Q68KK2
    29187540
    414428 5va6:A (2.4) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414429 5va6:A (2.4) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414430 5va6:B (2.4) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414431 5va6:B (2.4) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414432 5va7:A (2.153) BS01 dna ? GO:0003700 ... P04150 28591827
    414433 5va7:A (2.153) BS02 dna ? GO:0003700 ... P04150 28591827
    414434 5va7:A (2.153) BS03 ZN ? GO:0003700 ... P04150 28591827
    414435 5va7:A (2.153) BS04 ZN ? GO:0003700 ... P04150 28591827
    414436 5va7:B (2.153) BS01 dna ? GO:0003700 ... P04150 28591827
    414437 5va7:B (2.153) BS02 ZN ? GO:0003700 ... P04150 28591827
    414438 5va7:B (2.153) BS03 ZN ? GO:0003700 ... P04150 28591827
    414439 5va8:A (1.6) BS01 NAP ? GO:0000166 ... B2JE32 N/A
    414440 5va8:A (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    414441 5va8:B (1.6) BS01 NAP ? GO:0000166 ... B2JE32 N/A
    414442 5va8:B (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    414443 5va8:C (1.6) BS01 NAP ? GO:0000166 ... B2JE32 N/A
    414444 5va8:C (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    414445 5va8:D (1.6) BS01 NAP ? GO:0000166 ... B2JE32 N/A
    414446 5va8:D (1.6) BS02 TCE ? GO:0000166 ... B2JE32 N/A
    414447 5va9:A (2.55) BS01 peptide 3.2.1.1 GO:0003824 ... P04746 31241898
    414448 5va9:A (2.55) BS02 CA 3.2.1.1 GO:0003824 ... P04746 31241898
    414449 5va9:B (2.55) BS01 peptide 3.2.1.1 GO:0003824 ... P04746 31241898
    414450 5va9:B (2.55) BS02 CA 3.2.1.1 GO:0003824 ... P04746 31241898
    414451 5vaa:A (1.55) BS01 BMA ? N/A P01863 28559564
    414452 5vaa:A (1.55) BS02 GAL ? N/A P01863 28559564
    414453 5vaa:B (1.55) BS01 GAL ? N/A P01863 28559564
    414454 5vab:A (1.702) BS01 peptide ? N/A I1N521 28383693
    414455 5vab:A (1.702) BS02 ZN ? N/A I1N521 28383693
    414456 5vab:A (1.702) BS03 ZN ? N/A I1N521 28383693
    414457 5vac:A (1.949) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414458 5vac:A (1.949) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414459 5vad:A (2.36) BS01 91Y 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621 MOAD: Kd=0.76nM
    414460 5vad:A (2.36) BS02 PRO 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621
    414461 5vad:A (2.36) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621
    414462 5vad:B (2.36) BS01 91Y 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621 MOAD: Kd=0.76nM
    414463 5vad:B (2.36) BS02 PRO 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621
    414464 5vad:B (2.36) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621
    414465 5vah:A (2.4) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414466 5vah:A (2.4) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414467 5vah:B (2.4) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414468 5vah:B (2.4) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414469 5vaj:A (1.95) BS01 rna 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414470 5vaj:A (1.95) BS02 dna 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414471 5vaj:A (1.95) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414472 5vaj:A (1.95) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414473 5vaj:B (1.95) BS01 rna 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414474 5vaj:B (1.95) BS02 dna 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414475 5vaj:B (1.95) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414476 5vaj:B (1.95) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    414477 5val:A (2.26) BS01 92D 2.7.11.1 GO:0004672 ... P15056 28557458
    414478 5val:B (2.26) BS01 92D 2.7.11.1 GO:0004672 ... P15056 28557458
    414479 5vam:A (2.1) BS01 92J 2.7.11.1 GO:0004672 ... P15056 28557458 BindingDB: IC50=0.400000nM, EC50=796nM
    414480 5vam:B (2.1) BS01 92J 2.7.11.1 GO:0004672 ... P15056 28557458 BindingDB: IC50=0.400000nM, EC50=796nM
    414481 5van:A (2.202) BS01 BGC ? GO:0004553 ... Q86Z14 29342135
    414482 5van:A (2.202) BS02 BGC ? GO:0004553 ... Q86Z14 29342135
    414483 5vao:A (2.56) BS01 peptide ? GO:0003723 ... Q77DJ5 28593988
    414484 5vao:B (2.56) BS01 peptide ? GO:0003723 ... Q77DJ5 28593988
    414485 5vao:C (2.56) BS01 peptide ? GO:0003723 ... Q77DJ5 28593988
    414486 5vao:D (2.56) BS01 peptide ? GO:0003723 ... Q77DJ5 28593988
    414487 5vao:D (2.56) BS02 peptide ? GO:0003723 ... Q77DJ5 28593988
    414488 5vao:D (2.56) BS03 CA ? GO:0003723 ... Q77DJ5 28593988
    414489 5vap:A (1.85) BS01 peptide ? GO:0003723 ... Q77DJ5 28593988
    414490 5vap:B (1.85) BS01 peptide ? GO:0003723 ... Q77DJ5 28593988
    414491 5vaq:A (2.606) BS01 peptide ? GO:0004553 ... Q86Z14 29342135
    414492 5var:A (1.83) BS01 92Y 1.14.11.66
    1.14.11.69
    N/A O75164 29691138 MOAD: Kd=81.7uM
    BindingDB: Kd=80000nM
    414493 5vau:A (1.754) BS01 peptide ? GO:0042981 ... P10415 N/A
    414494 5vau:A (1.754) BS02 peptide ? GO:0042981 ... P10415 N/A
    414495 5vau:B (1.754) BS01 peptide ? GO:0042981 ... P10415 N/A
    414496 5vau:C (1.754) BS01 peptide ? GO:0042981 ... P10415 N/A
    414497 5vau:C (1.754) BS02 peptide ? GO:0042981 ... P10415 N/A
    414498 5vau:D (1.754) BS01 peptide ? GO:0042981 ... P10415 N/A
    414499 5vaw:A (1.69) BS01 GLU ? GO:0005515 ... A0A0D5YCX7
    P0AEX9
    30413536
    414500 5vaw:A (1.69) BS02 LYS ? GO:0005515 ... A0A0D5YCX7
    P0AEX9
    30413536
    414501 5vaw:A (1.69) BS03 SER ? GO:0005515 ... A0A0D5YCX7
    P0AEX9
    30413536
    414502 5vax:A (2.0) BS01 peptide ? GO:0042981 ... P10415 N/A
    414503 5vax:B (2.0) BS01 peptide ? GO:0042981 ... P10415 N/A
    414504 5vax:C (2.0) BS01 peptide ? GO:0042981 ... P10415 N/A
    414505 5vax:D (2.0) BS01 peptide ? GO:0042981 ... P10415 N/A
    414506 5vay:A (1.804) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    N/A
    414507 5vay:A (1.804) BS02 peptide ? GO:0042981 ... P10415
    Q07817
    N/A
    414508 5vay:B (1.804) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    N/A
    414509 5vay:C (1.804) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    N/A
    414510 5vay:C (1.804) BS02 peptide ? GO:0042981 ... P10415
    Q07817
    N/A
    414511 5vay:D (1.804) BS01 peptide ? GO:0042981 ... P10415
    Q07817
    N/A
    414512 5vb0:A (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414513 5vb0:B (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414514 5vb0:C (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414515 5vb0:D (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414516 5vb0:E (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414517 5vb0:F (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414518 5vb0:G (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414519 5vb0:H (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    414520 5vb5:A (2.226) BS01 92A ? GO:0003677 ... P51449
    Q15596
    28546429 MOAD: Kd=0.35uM
    414521 5vb6:A (2.041) BS01 927 ? GO:0003677 ... P51449
    Q15596
    28546429 MOAD: Kd=0.43uM
    414522 5vb7:A (2.335) BS01 921 ? GO:0003677 ... P51449
    Q15596
    28546429 MOAD: Kd=0.19uM
    414523 5vb9:A (1.7) BS01 peptide ? GO:0005125 ... Q16552 29329326
    414524 5vb9:B (1.7) BS01 peptide ? GO:0005125 ... Q16552 29329326
    414525 5vbc:A (2.1) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414526 5vbc:A (2.1) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414527 5vbc:B (2.1) BS01 peptide 2.1.1.369 N/A B9RU15 28383693
    414528 5vbc:B (2.1) BS02 SAH 2.1.1.369 N/A B9RU15 28383693
    414529 5vbe:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 29033317
    414530 5vbe:A (1.57) BS02 92V 3.6.5.2 GO:0003924 ... P01112 29033317
    414531 5vbi:A (1.75) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    414532 5vbi:B (1.75) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    414533 5vbl:B (2.6) BS01 peptide ? GO:0004930 ... P00268
    P35414
    28528775
    414534 5vbl:B (2.6) BS02 ZN ? GO:0004930 ... P00268
    P35414
    28528775
    414535 5vbm:A (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 29033317
    414536 5vbm:A (1.49) BS02 92V 3.6.5.2 GO:0003924 ... P01116 29033317
    414537 5vbn:B (2.35) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    414538 5vbn:B (2.35) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    414539 5vbn:F (2.35) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    414540 5vbn:F (2.35) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    414541 5vbo:A (1.3) BS01 4K4 ? N/A O60885 34710325
    414542 5vbp:A (1.83) BS01 79C ? N/A O60885 34710325
    414543 5vbp:A (1.83) BS02 79C ? N/A O60885 34710325
    414544 5vbp:B (1.83) BS01 79C ? N/A O60885 34710325
    414545 5vbp:B (1.83) BS02 79C ? N/A O60885 34710325
    414546 5vbq:A (1.65) BS01 R78 ? N/A Q58F21 34710325 BindingDB: IC50=1400nM
    414547 5vbq:B (1.65) BS01 R78 ? N/A Q58F21 34710325 BindingDB: IC50=1400nM
    414548 5vbr:A (1.9) BS01 IBI ? N/A Q58F21 34710325
    414549 5vbr:B (1.9) BS01 IBI ? N/A Q58F21 34710325
    414550 5vbs:A (1.749) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 28752992
    414551 5vbs:A (1.749) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 28752992
    414552 5vbu:A (3.31) BS01 HEM 1.14.14.16 GO:0004497 ... P08686 28539365
    414553 5vbu:A (3.31) BS02 3QZ 1.14.14.16 GO:0004497 ... P08686 28539365
    414554 5vbu:B (3.31) BS01 HEM 1.14.14.16 GO:0004497 ... P08686 28539365
    414555 5vbu:B (3.31) BS02 3QZ 1.14.14.16 GO:0004497 ... P08686 28539365
    414556 5vbu:C (3.31) BS01 HEM 1.14.14.16 GO:0004497 ... P08686 28539365
    414557 5vbu:C (3.31) BS02 3QZ 1.14.14.16 GO:0004497 ... P08686 28539365
    414558 5vbz:A (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29033317
    414559 5vbz:A (2.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29033317
    414560 5vbz:B (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29033317
    414561 5vbz:C (2.2) BS01 92V 3.6.5.2 GO:0003924 ... P01112 29033317
    414562 5vbz:C (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29033317
    414563 5vbz:C (2.2) BS03 MG 3.6.5.2 GO:0003924 ... P01112 29033317
    414564 5vc0:A (2.7) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 28590129
    414565 5vc0:A (2.7) BS02 RIT 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 28590129 BindingDB: IC50=100nM, Ki=170nM
    414566 5vc1:A (1.94) BS01 CA ? N/A P14151 28489325
    414567 5vc3:A (1.97) BS01 DB8 2.7.10.2 GO:0004672 ... P30291 28792760 MOAD: Kd=77.5nM
    BindingDB: Kd=510nM
    414568 5vc4:A (2.1) BS01 XZN 2.7.10.2 GO:0004672 ... P30291 28792760 MOAD: Kd=43.7nM
    BindingDB: Kd=44nM
    414569 5vc5:A (1.93) BS01 96M 2.7.10.2 GO:0004672 ... P30291 28792760 MOAD: Kd=11nM
    BindingDB: IC50=165nM, Kd=11nM
    414570 5vc6:A (2.0) BS01 P48 2.7.10.2 GO:0004672 ... P30291 28792760 MOAD: Kd=13.6nM
    BindingDB: Kd=14nM
    414571 5vc7:A (3.9) BS01 ATP ? GO:0005524 ... O05209 28390173
    414572 5vc7:A (3.9) BS02 ATP ? GO:0005524 ... O05209 28390173
    414573 5vc7:C (3.9) BS01 ATP ? GO:0005524 ... O05209 28390173
    414574 5vc7:C (3.9) BS02 ATP ? GO:0005524 ... O05209 28390173
    414575 5vc7:D (3.9) BS01 ATP ? GO:0005524 ... O05209 28390173
    414576 5vc7:D (3.9) BS02 ATP ? GO:0005524 ... O05209 28390173
    414577 5vc7:E (3.9) BS01 ATP ? GO:0005524 ... O05209 28390173
    414578 5vc7:E (3.9) BS02 ATP ? GO:0005524 ... O05209 28390173
    414579 5vc7:F (3.9) BS01 ATP ? GO:0005524 ... O05209 28390173
    414580 5vc7:F (3.9) BS02 ATP ? GO:0005524 ... O05209 28390173
    414581 5vc7:G (3.9) BS01 ATP ? GO:0005524 ... O05209 28390173
    414582 5vc7:G (3.9) BS02 ATP ? GO:0005524 ... O05209 28390173
    414583 5vc8:A (1.8) BS01 dna 2.1.1.357 N/A O96028 34271259
    414584 5vc9:C (2.1) BS01 dna ? GO:0003677 ... Q9H2H0 29276034
    414585 5vc9:C (2.1) BS02 ZN ? GO:0003677 ... Q9H2H0 29276034
    414586 5vc9:C (2.1) BS03 ZN ? GO:0003677 ... Q9H2H0 29276034
    414587 5vc9:F (2.1) BS01 dna ? GO:0003677 ... Q9H2H0 29276034
    414588 5vc9:F (2.1) BS02 dna ? GO:0003677 ... Q9H2H0 29276034
    414589 5vc9:F (2.1) BS03 ZN ? GO:0003677 ... Q9H2H0 29276034
    414590 5vc9:F (2.1) BS04 ZN ? GO:0003677 ... Q9H2H0 29276034
    414591 5vcb:B (4.1) BS01 PNS 2.7.8.7 GO:0000287 ... P24224 29054754
    414592 5vcb:D (4.1) BS01 PNS ? GO:0000035 ... P0A6A8 29054754
    414593 5vcb:F (4.1) BS01 PNS ? GO:0000035 ... P0A6A8 29054754
    414594 5vcb:M (4.1) BS01 PNS 2.7.8.7 GO:0000287 ... P24224 29054754
    414595 5vcb:S (4.1) BS01 PNS 2.7.8.7 GO:0000287 ... P24224 29054754
    414596 5vcb:U (4.1) BS01 PNS 2.7.8.7 GO:0000287 ... P24224 29054754
    414597 5vcb:U (4.1) BS02 PNS 2.7.8.7 GO:0000287 ... P24224 29054754
    414598 5vcb:X (4.1) BS01 PNS ? GO:0000035 ... P0A6A8 29054754
    414599 5vcb:c (4.1) BS01 PNS 2.7.8.7 GO:0000287 ... P24224 29054754
    414600 5vcb:c (4.1) BS02 PNS 2.7.8.7 GO:0000287 ... P24224 29054754

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).