SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    415001 5vgd:A (2.32) BS01 peptide ? N/A P10321 28649982
    415002 5vge:A (2.6) BS01 peptide ? N/A P10321 28649982
    415003 5vge:A (2.6) BS02 ZN ? N/A P10321 28649982
    415004 5vge:A (2.6) BS03 ZN ? N/A P10321 28649982
    415005 5vge:A (2.6) BS04 ZN ? N/A P10321 28649982
    415006 5vgi:A (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    415007 5vgi:A (2.07) BS02 9DJ 1.14.11.66
    1.14.11.69
    N/A O75164 28835804 BindingDB: IC50=104nM
    415008 5vgi:B (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    415009 5vgi:B (2.07) BS02 9DJ 1.14.11.66
    1.14.11.69
    N/A O75164 28835804 BindingDB: IC50=104nM
    415010 5vgi:C (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    415011 5vgi:C (2.07) BS02 9DJ 1.14.11.66
    1.14.11.69
    N/A O75164 28835804 BindingDB: IC50=104nM
    415012 5vgi:D (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    415013 5vgi:D (2.07) BS02 9DJ 1.14.11.66
    1.14.11.69
    N/A O75164 28835804 BindingDB: IC50=104nM
    415014 5vgj:H (3.456) BS01 MAN N/A N/A N/A 28514685
    415015 5vgm:A (1.95) BS01 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    415016 5vgm:A (1.95) BS02 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    415017 5vgm:B (1.95) BS01 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    415018 5vgm:B (1.95) BS02 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    415019 5vgo:A (1.621) BS01 9B1 2.7.10.2 GO:0004672 ... Q06187 28626519 MOAD: Ki=1.28nM
    BindingDB: Ki=1.3nM, EC50=33nM, IC50=87nM
    415020 5vgp:A (2.116) BS01 BMA ? N/A Q6PYX1 30198883
    415021 5vgp:A (2.116) BS02 GAL ? N/A Q6PYX1 30198883
    415022 5vgp:B (2.116) BS01 BMA ? N/A Q6PYX1 30198883
    415023 5vgr:A (2.096) BS01 GDP 3.6.5.- GO:0003924 ... Q6DD88 28602821
    415024 5vgr:B (2.096) BS01 GDP 3.6.5.- GO:0003924 ... Q6DD88 28602821
    415025 5vgs:A (1.9) BS01 9A4 5.3.99.12 N/A P59082 28708375
    415026 5vgs:A (1.9) BS02 9A7 5.3.99.12 N/A P59082 28708375
    415027 5vgt:A (1.776) BS01 CA ? N/A Q716G8 29279385
    415028 5vgt:A (1.776) BS02 MG ? N/A Q716G8 29279385
    415029 5vgt:B (1.776) BS01 CA ? N/A Q716G8 29279385
    415030 5vgv:A (2.6) BS01 CU 3.4.24.69 GO:0004222 ... P0DPI1 28475321
    415031 5vgy:A (1.39) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28817930
    415032 5vgy:A (1.39) BS02 9AA 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28817930 MOAD: Kd=65.5uM
    BindingDB: Kd=43600nM
    415033 5vh0:A (2.055) BS01 8P0 ? N/A Q54436 30705306
    415034 5vh0:A (2.055) BS02 8P0 ? N/A Q54436 30705306
    415035 5vh0:B (2.055) BS01 8P0 ? N/A Q54436 30705306
    415036 5vh0:C (2.055) BS01 8P0 ? N/A Q54436 30705306
    415037 5vh0:D (2.055) BS01 8P0 ? N/A Q54436 30705306
    415038 5vh0:D (2.055) BS02 8P0 ? N/A Q54436 30705306
    415039 5vh2:A (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    415040 5vh2:A (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    415041 5vh2:A (2.84) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    415042 5vh2:B (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    415043 5vh2:B (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    415044 5vh2:B (2.84) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    415045 5vh2:C (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    415046 5vh2:C (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    415047 5vh2:D (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    415048 5vh2:D (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    415049 5vh4:A (2.0) BS01 NAD N/A N/A N/A 28421849
    415050 5vh4:H (2.0) BS01 NAD N/A N/A N/A 28421849
    415051 5vh5:A (1.75) BS01 BMA N/A N/A N/A 28421849
    415052 5vh5:A (1.75) BS02 GAL N/A N/A N/A 28421849
    415053 5vh5:A (1.75) BS03 ZN N/A N/A N/A 28421849
    415054 5vhb:A (1.61) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 29314498
    415055 5vhb:A (1.61) BS02 9CY 2.7.11.11 GO:0000287 ... P00517 29314498
    415056 5vhc:D (2.49) BS01 MG 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    415057 5vhc:D (2.49) BS02 BEF 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    415058 5vhc:D (2.49) BS03 ADP 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    415059 5vhd:D (2.55) BS01 ADP 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    415060 5vhd:D (2.55) BS02 ALF 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    415061 5vhe:A (3.793) BS01 dna 3.6.4.12
    3.6.4.13
    GO:0000287 ... Q05B79 29899445
    415062 5vhv:A (1.799) BS01 dna ? N/A C3K795 29054852
    415063 5vhv:A (1.799) BS02 dna ? N/A C3K795 29054852
    415064 5vhv:B (1.799) BS01 dna ? N/A C3K795 29054852
    415065 5vhv:B (1.799) BS02 dna ? N/A C3K795 29054852
    415066 5vhw:A (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415067 5vhw:B (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415068 5vhw:C (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415069 5vhw:D (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415070 5vhx:A (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415071 5vhx:B (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415072 5vhx:C (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415073 5vhx:D (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415074 5vhy:A (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415075 5vhy:B (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415076 5vhy:C (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415077 5vhy:D (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415078 5vhz:A (8.4) BS01 QUS ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415079 5vhz:B (8.4) BS01 QUS ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415080 5vhz:C (8.4) BS01 QUS ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415081 5vhz:D (8.4) BS01 QUS ? GO:0000149 ... D3ZK93
    P19491
    28472657
    415082 5vi0:A (2.396) BS01 dna ? N/A C3K795 29054852
    415083 5vi0:A (2.396) BS02 dna ? N/A C3K795 29054852
    415084 5vi0:A (2.396) BS03 P4K ? N/A C3K795 29054852
    415085 5vi0:B (2.396) BS01 dna ? N/A C3K795 29054852
    415086 5vi0:B (2.396) BS02 dna ? N/A C3K795 29054852
    415087 5vi5:C (3.196) BS01 dna 2.7.7.6 GO:0000428 ... P60281 28703128
    415088 5vi5:C (3.196) BS02 dna 2.7.7.6 GO:0000428 ... P60281 28703128
    415089 5vi5:C (3.196) BS03 rna 2.7.7.6 GO:0000428 ... P60281 28703128
    415090 5vi5:D (3.196) BS01 dna 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415091 5vi5:D (3.196) BS02 dna 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415092 5vi5:D (3.196) BS03 rna 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415093 5vi5:D (3.196) BS04 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415094 5vi5:D (3.196) BS05 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415095 5vi5:F (3.196) BS01 dna ? GO:0003677 ... A0QW02 28703128
    415096 5vi5:F (3.196) BS02 dna ? GO:0003677 ... A0QW02 28703128
    415097 5vi6:A (1.237) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 28846375
    415098 5vi6:A (1.237) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 28846375
    415099 5vi8:D (2.76) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415100 5vi8:D (2.76) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415101 5vi8:D (2.76) BS03 MG 2.7.7.6 GO:0000287 ... A0QS66 28703128
    415102 5vi8:F (2.76) BS01 dna ? GO:0003677 ... A0QW02 28703128
    415103 5vi8:F (2.76) BS02 dna ? GO:0003677 ... A0QW02 28703128
    415104 5vi8:T (2.76) BS01 dna 2.7.7.6 GO:0003677 ... A0QSL8 28703128
    415105 5vi8:T (2.76) BS02 dna 2.7.7.6 GO:0003677 ... A0QSL8 28703128
    415106 5vi9:A (1.95) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 29314498
    415107 5vi9:A (1.95) BS02 9D4 2.7.11.11 GO:0000287 ... P00517 29314498
    415108 5via:A (1.764) BS01 HEM ? GO:0004601 ... Q4QC30 28584975
    415109 5vib:A (2.37) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 29314498
    415110 5vib:A (2.37) BS02 9D1 2.7.11.11 GO:0000287 ... P00517 29314498 MOAD: ic50=0.102uM
    415111 5vie:A (2.6) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 29058723
    415112 5vie:A (2.6) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 29058723 BindingDB: IC50=1800nM
    415113 5vie:A (2.6) BS03 9C1 2.4.1.255 GO:0006493 ... O15294 29058723
    415114 5vie:C (2.6) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 29058723
    415115 5vie:C (2.6) BS02 peptide 2.4.1.255 GO:0006493 ... O15294 29058723
    415116 5vie:C (2.6) BS03 UDP 2.4.1.255 GO:0006493 ... O15294 29058723 BindingDB: IC50=1800nM
    415117 5vie:C (2.6) BS04 9CD 2.4.1.255 GO:0006493 ... O15294 29058723
    415118 5vif:A (2.25) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 29058723
    415119 5vif:A (2.25) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 29058723 BindingDB: IC50=1800nM
    415120 5vif:A (2.25) BS03 9C1 2.4.1.255 GO:0006493 ... O15294 29058723
    415121 5vih:A (2.4) BS01 GLY ? GO:0015276 ... P35439 28760974
    415122 5vih:B (2.4) BS01 5DZ ? GO:0015276 ... Q00959 28760974 MOAD: Ki=32.2nM
    415123 5vii:A (1.951) BS01 GLY ? GO:0015276 ... P35439 28760974
    415124 5vii:B (1.951) BS01 5DY ? GO:0015276 ... Q00959 28760974 MOAD: Ki=51.8nM
    415125 5vij:A (2.105) BS01 GLY ? GO:0015276 ... P35439 28760974
    415126 5vij:B (2.105) BS01 5DX ? GO:0015276 ... Q00959 28760974 MOAD: Ki=24.3nM
    415127 5vik:A (1.35) BS01 BLA N/A GO:0006355 ... N/A 28936332
    415128 5vil:A (2.64) BS01 9E1 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=736nM
    415129 5vil:B (2.64) BS01 9E1 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=736nM
    415130 5vil:C (2.64) BS01 9E1 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=736nM
    415131 5vil:D (2.64) BS01 9E1 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=736nM
    415132 5vim:A (2.1) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... Q32ZE1 28876240
    415133 5vim:B (2.1) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... Q32ZE1 28876240
    415134 5vin:A (2.60004) BS01 CO 5.4.2.2 GO:0000287 ... P36871 30122451
    415135 5vin:B (2.60004) BS01 CO 5.4.2.2 GO:0000287 ... P36871 30122451
    415136 5vio:A (2.84) BS01 9E4 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=272nM
    415137 5vio:B (2.84) BS01 9E4 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=272nM
    415138 5vio:D (2.84) BS01 9E4 2.7.11.25 GO:0004672 ... Q99683 29348070 BindingDB: IC50=272nM
    415139 5viq:A (1.34) BS01 BLA N/A GO:0006355 ... N/A 28936332
    415140 5vir:A (1.7) BS01 9CG 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    415141 5vir:A (1.7) BS02 NAP 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    415142 5vir:A (1.7) BS03 9CG 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    415143 5vir:B (1.7) BS01 9CG 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    415144 5vir:B (1.7) BS02 9CG 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    415145 5vir:B (1.7) BS03 NAP 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    415146 5vit:A (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    415147 5vit:I (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    415148 5vit:P (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    415149 5vit:V (2.203) BS01 MLI ? GO:0016740 ... Q9I6T0 28757619
    415150 5viv:A (1.33) BS01 9UY ? GO:0006355 ... A0A161I5N6 28936332
    415151 5viv:A (1.33) BS02 9V1 ? GO:0006355 ... A0A161I5N6 28936332
    415152 5viy:H (6.2) BS01 MAN ? N/A S6B291 28548638
    415153 5viy:H (6.2) BS02 MAN ? N/A S6B291 28548638
    415154 5viy:I (6.2) BS01 MAN ? GO:0002250 ... P01834 28548638
    415155 5viy:J (6.2) BS01 MAN ? N/A S6B291 28548638
    415156 5viy:K (6.2) BS01 MAN ? N/A S6B291 28548638
    415157 5viy:O (6.2) BS01 MAN ? N/A S6B291 28548638
    415158 5vj0:A (1.93) BS01 HEM ? GO:0004601 ... E3G9I4 29308295
    415159 5vj0:B (1.93) BS01 HEM ? GO:0004601 ... E3G9I4 29308295
    415160 5vj0:C (1.93) BS01 HEM ? GO:0004601 ... E3G9I4 29308295
    415161 5vj0:D (1.93) BS01 HEM ? GO:0004601 ... E3G9I4 29308295
    415162 5vj1:D (2.995) BS01 COA 2.1.3.1
    2.1.3.10
    GO:0005975 ... Q9I6S7 28757619
    415163 5vj1:E (2.995) BS01 COA 2.1.3.10 GO:0005975 ... Q9I6S6 28757619
    415164 5vj1:L (2.995) BS01 COA 2.1.3.1
    2.1.3.10
    GO:0005975 ... Q9I6S7 28757619
    415165 5vj3:A (2.0) BS01 HV9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 N/A
    415166 5vj5:A (1.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    415167 5vj5:A (1.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    415168 5vj5:A (1.9) BS03 PHN 1.1.1.1 GO:0004022 ... P00327 28640600
    415169 5vj5:B (1.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    415170 5vj5:B (1.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    415171 5vj5:B (1.9) BS03 PHN 1.1.1.1 GO:0004022 ... P00327 28640600
    415172 5vj7:A (2.55) BS01 SF4 ? GO:0000166 ... I6V148 28705933
    415173 5vj7:A (2.55) BS02 SF4 ? GO:0000166 ... I6V148 28705933
    415174 5vj7:A (2.55) BS03 FAD ? GO:0000166 ... I6V148 28705933
    415175 5vj7:B (2.55) BS01 FAD 1.18.1.2 GO:0000166 ... I6TYZ3 28705933
    415176 5vj7:B (2.55) BS02 FES 1.18.1.2 GO:0000166 ... I6TYZ3 28705933
    415177 5vja:A (2.46) BS01 DUK 2.7.11.1 GO:0004672 ... O43293 30033129
    415178 5vja:B (2.46) BS01 DUK 2.7.11.1 GO:0004672 ... O43293 30033129
    415179 5vja:C (2.46) BS01 DUK 2.7.11.1 GO:0004672 ... O43293 30033129
    415180 5vja:D (2.46) BS01 ILE 2.7.11.1 GO:0004672 ... O43293 30033129
    415181 5vja:D (2.46) BS02 DUK 2.7.11.1 GO:0004672 ... O43293 30033129
    415182 5vjd:A (1.701) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 29593097
    415183 5vjd:B (1.701) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 29593097
    415184 5vje:A (1.65) BS01 GOS 4.1.2.13 GO:0004332 ... P0AB71 29593097 MOAD: Ki=60uM
    415185 5vje:B (1.65) BS01 GOS 4.1.2.13 GO:0004332 ... P0AB71 29593097 MOAD: Ki=60uM
    415186 5vjf:A (1.85) BS01 ZN 4.1.2.13 GO:0004332 ... P56109 29593097
    415187 5vjf:A (1.85) BS02 CA 4.1.2.13 GO:0004332 ... P56109 29593097
    415188 5vjf:B (1.85) BS01 ZN 4.1.2.13 GO:0004332 ... P56109 29593097
    415189 5vjf:B (1.85) BS02 CA 4.1.2.13 GO:0004332 ... P56109 29593097
    415190 5vjg:A (1.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    415191 5vjg:A (1.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    415192 5vjg:A (1.9) BS03 0BP 1.1.1.1 GO:0004022 ... P00327 28640600 MOAD: Kd=0.31mM
    415193 5vjh:A (4.0) BS01 peptide ? GO:0005515 ... P31539 28619716
    415194 5vjh:A (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    415195 5vjh:A (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    415196 5vjh:A (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    415197 5vjh:B (4.0) BS01 peptide ? GO:0005515 ... P31539 28619716
    415198 5vjh:B (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    415199 5vjh:B (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    415200 5vjh:C (4.0) BS01 peptide ? GO:0005515 ... P31539 28619716

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).