SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    415601 5vn3:G (3.7) BS01 MAN ? GO:0019031 ... B3UES2 28700571
    415602 5vn3:I (3.7) BS01 MAN ? GO:0019031 ... B3UES2 28700571
    415603 5vn3:J (3.7) BS01 MAN ? GO:0019031 ... B3UES2 28700571
    415604 5vn4:A (1.35) BS01 ADE 2.4.2.7 GO:0003999 ... Q57V32 N/A
    415605 5vn4:A (1.35) BS02 HSX 2.4.2.7 GO:0003999 ... Q57V32 N/A
    415606 5vn4:B (1.35) BS01 ADE 2.4.2.7 GO:0003999 ... Q57V32 N/A
    415607 5vn4:B (1.35) BS02 HSX 2.4.2.7 GO:0003999 ... Q57V32 N/A
    415608 5vn5:A (1.9) BS01 ZN ? GO:0005737 ... G2IN02 28935670
    415609 5vn5:B (1.9) BS01 ZN ? GO:0005737 ... G2IN02 28935670
    415610 5vn5:C (1.9) BS01 ZN ? GO:0005737 ... G2IN02 28935670
    415611 5vn6:A (2.1) BS01 MG 1.14.11.17 GO:0000908 ... B1YQF4 N/A
    415612 5vn6:B (2.1) BS01 MG 1.14.11.17 GO:0000908 ... B1YQF4 N/A
    415613 5vnb:A (2.4) BS01 peptide ? GO:0006355 ... O95619 30071723
    415614 5vnb:B (2.4) BS01 peptide ? GO:0006355 ... O95619 30071723
    415615 5vnb:D (2.4) BS01 peptide ? GO:0006355 ... O95619 30071723
    415616 5vnc:A (2.98) BS01 UDP 2.4.1.11 GO:0004373 ... P27472 N/A
    415617 5vnc:A (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    415618 5vnc:B (2.98) BS01 UDP 2.4.1.11 GO:0004373 ... P27472 N/A
    415619 5vnc:B (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    415620 5vnc:C (2.98) BS01 GCS 2.4.1.11 GO:0004373 ... P27472 N/A
    415621 5vnc:C (2.98) BS02 UDP 2.4.1.11 GO:0004373 ... P27472 N/A
    415622 5vnc:C (2.98) BS03 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    415623 5vnc:D (2.98) BS01 UDP 2.4.1.11 GO:0004373 ... P27472 N/A
    415624 5vnc:D (2.98) BS02 G6P 2.4.1.11 GO:0004373 ... P27472 N/A
    415625 5vnd:A (2.2) BS01 9ES 2.7.10.1 GO:0004672 ... P11362 29247039
    415626 5vnd:B (2.2) BS01 9ES 2.7.10.1 GO:0004672 ... P11362 29247039
    415627 5vne:A (2.698) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415628 5vne:B (2.698) BS01 peptide ? GO:0006886 ... O95486 28594326
    415629 5vne:B (2.698) BS02 ZN ? GO:0006886 ... O95486 28594326
    415630 5vnf:A (2.407) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415631 5vnf:B (2.407) BS01 peptide ? GO:0006886 ... O95486 28594326
    415632 5vnf:B (2.407) BS02 ZN ? GO:0006886 ... O95486 28594326
    415633 5vng:A (2.6) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415634 5vng:B (2.6) BS01 peptide ? GO:0006886 ... O95486 28594326
    415635 5vng:B (2.6) BS02 ZN ? GO:0006886 ... O95486 28594326
    415636 5vnh:A (2.6) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415637 5vnh:B (2.6) BS01 peptide ? GO:0006886 ... O95486 28594326
    415638 5vnh:B (2.6) BS02 ZN ? GO:0006886 ... O95486 28594326
    415639 5vni:A (2.788) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415640 5vni:B (2.788) BS01 peptide ? GO:0006886 ... O95486 28594326
    415641 5vni:B (2.788) BS02 ZN ? GO:0006886 ... O95486 28594326
    415642 5vnj:A (2.806) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415643 5vnj:B (2.806) BS01 peptide ? GO:0006886 ... O95486 28594326
    415644 5vnj:B (2.806) BS02 ZN ? GO:0006886 ... O95486 28594326
    415645 5vnk:A (2.55) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415646 5vnk:B (2.55) BS01 peptide ? GO:0006886 ... O95486 28594326
    415647 5vnk:B (2.55) BS02 ZN ? GO:0006886 ... O95486 28594326
    415648 5vnl:A (2.394) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415649 5vnl:B (2.394) BS01 ZN ? GO:0006886 ... O95486 28594326
    415650 5vnl:B (2.394) BS02 CLT ? GO:0006886 ... O95486 28594326
    415651 5vnm:A (2.765) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415652 5vnm:B (2.765) BS01 ZN ? GO:0006886 ... O95486 28594326
    415653 5vnm:B (2.765) BS02 CLT ? GO:0006886 ... O95486 28594326
    415654 5vnn:A (2.501) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415655 5vnn:B (2.501) BS01 CLT ? GO:0006886 ... O95486 28594326
    415656 5vnn:B (2.501) BS02 ZN ? GO:0006886 ... O95486 28594326
    415657 5vno:A (2.905) BS01 ZN ? GO:0000139 ... Q15436 28594326
    415658 5vno:B (2.905) BS01 ZN ? GO:0006886 ... O95486 28594326
    415659 5vnp:A (2.23) BS01 9FM 3.8.1.5 GO:0003824 ... P0A3G2 28557281
    415660 5vnp:B (2.23) BS01 9FM 3.8.1.5 GO:0003824 ... P0A3G2 28557281
    415661 5vns:A (1.45) BS01 DH9 2.3.1.122
    2.3.1.20
    GO:0004144 ... P9WQN9 29352107
    415662 5vnu:A (1.584) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28768416
    415663 5vnu:A (1.584) BS02 MN 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28768416
    415664 5vnw:B (2.6) BS01 BUA ? GO:0003677 ... P02768 29434346
    415665 5vnz:A (3.41) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415666 5vnz:A (3.41) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415667 5vnz:A (3.41) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415668 5vnz:D (3.41) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415669 5vnz:D (3.41) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415670 5vnz:D (3.41) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415671 5vo0:A (3.9) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415672 5vo0:A (3.9) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415673 5vo0:A (3.9) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415674 5vo0:D (3.9) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415675 5vo0:D (3.9) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415676 5vo0:D (3.9) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415677 5vo0:D (3.9) BS04 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415678 5vo0:D (3.9) BS05 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    415679 5vo1:A (2.45) BS01 9FS 2.7.11.25 GO:0004672 ... Q12852 28929759 MOAD: Ki=0.007uM
    415680 5vo2:A (2.96) BS01 9FV 2.7.11.25 GO:0004672 ... Q12852 28929759 BindingDB: Ki=154nM, IC50=1900nM
    415681 5vo3:A (1.954) BS01 SIN 3.5.1.18 GO:0005829 ... P44514 29272107
    415682 5vo3:A (1.954) BS02 API 3.5.1.18 GO:0005829 ... P44514 29272107
    415683 5vo3:A (1.954) BS03 ZN 3.5.1.18 GO:0005829 ... P44514 29272107
    415684 5vo3:A (1.954) BS04 ZN 3.5.1.18 GO:0005829 ... P44514 29272107
    415685 5vo4:A (2.35) BS01 9FG ? N/A P10275 28696695 MOAD: ic50=3.2nM
    BindingDB: EC50=0.340000nM, IC50=3.2nM
    415686 5vo6:A (2.65) BS01 9J4 2.7.10.2 GO:0004672 ... P52333 28539220 BindingDB: IC50=0.900000nM
    415687 5vo8:B (3.3) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 28652344
    415688 5vo8:C (3.3) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 28652344
    415689 5vo8:C (3.3) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 28652344
    415690 5vo8:D (3.3) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415691 5vo8:D (3.3) BS02 dna 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415692 5vo8:D (3.3) BS03 rna 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415693 5vo8:D (3.3) BS04 POP 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415694 5vo8:D (3.3) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415695 5vo8:D (3.3) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415696 5vo8:D (3.3) BS07 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415697 5vo8:F (3.3) BS01 dna ? GO:0003677 ... Q5SKW1 28652344
    415698 5vo8:F (3.3) BS02 dna ? GO:0003677 ... Q5SKW1 28652344
    415699 5voe:H (2.0) BS01 rna 3.4.21.6 GO:0004252 ... P00742 29863725
    415700 5voe:H (2.0) BS02 CA 3.4.21.6 GO:0004252 ... P00742 29863725
    415701 5vof:H (2.25) BS01 rna 3.4.21.6 GO:0004252 ... P00742 29863725
    415702 5vof:H (2.25) BS02 RIV 3.4.21.6 GO:0004252 ... P00742 29863725 BindingDB: IC50=700nM, Ki=0.400000nM
    415703 5vof:H (2.25) BS03 CA 3.4.21.6 GO:0004252 ... P00742 29863725
    415704 5vog:A (1.5) BS01 G4P ? GO:0016757 ... A0A1D3HIA2 N/A
    415705 5voh:A (2.302) BS01 FAD ? GO:0000166 ... M5B0V2 28805804
    415706 5voh:A (2.302) BS02 NDP ? GO:0000166 ... M5B0V2 28805804
    415707 5voh:B (2.302) BS01 FAD ? GO:0000166 ... M5B0V2 28805804
    415708 5voh:B (2.302) BS02 NDP ? GO:0000166 ... M5B0V2 28805804
    415709 5voh:C (2.302) BS01 FAD ? GO:0000166 ... M5B0V2 28805804
    415710 5voh:C (2.302) BS02 NDP ? GO:0000166 ... M5B0V2 28805804
    415711 5voh:D (2.302) BS01 FAD ? GO:0000166 ... M5B0V2 28805804
    415712 5voh:D (2.302) BS02 NDP ? GO:0000166 ... M5B0V2 28805804
    415713 5voi:C (2.8) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 28652344
    415714 5voi:C (2.8) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 28652344
    415715 5voi:D (2.8) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415716 5voi:D (2.8) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415717 5voi:D (2.8) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415718 5voi:D (2.8) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    415719 5voi:F (2.8) BS01 dna ? GO:0003677 ... Q5SKW1 28652344
    415720 5voi:F (2.8) BS02 dna ? GO:0003677 ... Q5SKW1 28652344
    415721 5voj:A (1.799) BS01 9H4 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 28594175 MOAD: Ki=3.6nM
    415722 5voj:A (1.799) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 28594175
    415723 5vol:A (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415724 5vol:B (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415725 5vol:C (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415726 5vol:D (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415727 5vol:E (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415728 5vol:F (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415729 5vol:G (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415730 5vol:H (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    415731 5vom:A (1.67) BS01 9GY ? N/A O60885 28835800 MOAD: ic50=0.79uM
    BindingDB: IC50=790nM
    415732 5vom:B (1.67) BS01 9GY ? N/A O60885 28835800 MOAD: ic50=0.79uM
    BindingDB: IC50=790nM
    415733 5voo:A (2.4) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415734 5voo:B (2.4) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415735 5voo:C (2.4) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415736 5voo:D (2.4) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415737 5voo:E (2.4) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415738 5voo:F (2.4) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415739 5vop:A (2.1) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415740 5vop:B (2.1) BS01 C2F 2.1.1.13 GO:0042558 ... Q5SKM5 29372898
    415741 5vp0:A (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28796496
    415742 5vp0:A (2.2) BS02 9GJ 3.1.4.17 GO:0004114 ... O00408 28796496 MOAD: ic50=0.61nM
    BindingDB: IC50=0.610000nM
    415743 5vp0:B (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28796496
    415744 5vp0:B (2.2) BS02 9GJ 3.1.4.17 GO:0004114 ... O00408 28796496 MOAD: ic50=0.61nM
    BindingDB: IC50=0.610000nM
    415745 5vp0:C (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28796496
    415746 5vp0:C (2.2) BS02 9GJ 3.1.4.17 GO:0004114 ... O00408 28796496 MOAD: ic50=0.61nM
    BindingDB: IC50=0.610000nM
    415747 5vp1:A (1.86) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29093293
    415748 5vp1:A (1.86) BS02 9GA 3.1.4.17 GO:0004114 ... O00408 29093293 MOAD: ic50=0.51nM
    415749 5vp1:B (1.86) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29093293
    415750 5vp1:B (1.86) BS02 9GA 3.1.4.17 GO:0004114 ... O00408 29093293 MOAD: ic50=0.51nM
    415751 5vp1:C (1.86) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29093293
    415752 5vp1:C (1.86) BS02 9GA 3.1.4.17 GO:0004114 ... O00408 29093293 MOAD: ic50=0.51nM
    415753 5vp2:10 (2.8) BS01 rna ? GO:0003735 ... P60493 28505372
    415754 5vp2:10 (2.8) BS02 rna ? GO:0003735 ... P60493 28505372
    415755 5vp2:10 (2.8) BS03 rna ? GO:0003735 ... P60493 28505372
    415756 5vp2:10 (2.8) BS04 MG ? GO:0003735 ... P60493 28505372
    415757 5vp2:10 (2.8) BS05 MG ? GO:0003735 ... P60493 28505372
    415758 5vp2:10 (2.8) BS06 MG ? GO:0003735 ... P60493 28505372
    415759 5vp2:11 (2.8) BS01 rna ? GO:0003735 ... P60494 28505372
    415760 5vp2:11 (2.8) BS02 MG ? GO:0003735 ... P60494 28505372
    415761 5vp2:12 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 28505372
    415762 5vp2:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 28505372
    415763 5vp2:13 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 28505372
    415764 5vp2:13 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 28505372
    415765 5vp2:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 28505372
    415766 5vp2:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 28505372
    415767 5vp2:14 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 28505372
    415768 5vp2:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 28505372
    415769 5vp2:15 (2.8) BS01 rna ? GO:0003735 ... P80339 28505372
    415770 5vp2:15 (2.8) BS02 MG ? GO:0003735 ... P80339 28505372
    415771 5vp2:15 (2.8) BS03 ZN ? GO:0003735 ... P80339 28505372
    415772 5vp2:16 (2.8) BS01 rna ? GO:0000049 ... P35871 28505372
    415773 5vp2:16 (2.8) BS02 MG ? GO:0000049 ... P35871 28505372
    415774 5vp2:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 28505372
    415775 5vp2:16 (2.8) BS04 MG ? GO:0000049 ... P35871 28505372
    415776 5vp2:17 (2.8) BS01 rna ? GO:0003735 ... P80340 28505372
    415777 5vp2:17 (2.8) BS02 MG ? GO:0003735 ... P80340 28505372
    415778 5vp2:18 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 28505372
    415779 5vp2:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 28505372
    415780 5vp2:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 28505372
    415781 5vp2:18 (2.8) BS04 MG ? GO:0003735 ... Q5SKU1 28505372
    415782 5vp2:19 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 28505372
    415783 5vp2:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 28505372
    415784 5vp2:1D (2.8) BS01 rna ? GO:0002181 ... P60405 28505372
    415785 5vp2:1D (2.8) BS02 rna ? GO:0002181 ... P60405 28505372
    415786 5vp2:1D (2.8) BS03 MG ? GO:0002181 ... P60405 28505372
    415787 5vp2:1D (2.8) BS04 MG ? GO:0002181 ... P60405 28505372
    415788 5vp2:1D (2.8) BS05 MG ? GO:0002181 ... P60405 28505372
    415789 5vp2:1D (2.8) BS06 MG ? GO:0002181 ... P60405 28505372
    415790 5vp2:1D (2.8) BS07 MG ? GO:0002181 ... P60405 28505372
    415791 5vp2:1D (2.8) BS08 MG ? GO:0002181 ... P60405 28505372
    415792 5vp2:1D (2.8) BS09 MG ? GO:0002181 ... P60405 28505372
    415793 5vp2:1D (2.8) BS10 MG ? GO:0002181 ... P60405 28505372
    415794 5vp2:1D (2.8) BS11 MG ? GO:0002181 ... P60405 28505372
    415795 5vp2:1D (2.8) BS12 MG ? GO:0002181 ... P60405 28505372
    415796 5vp2:1E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 28505372
    415797 5vp2:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 28505372
    415798 5vp2:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 28505372
    415799 5vp2:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 28505372
    415800 5vp2:1F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 28505372

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).