SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    415801 5vp2:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 28505372
    415802 5vp2:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 28505372
    415803 5vp2:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 28505372
    415804 5vp2:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 28505372
    415805 5vp2:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 28505372
    415806 5vp2:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 28505372
    415807 5vp2:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 28505372
    415808 5vp2:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 28505372
    415809 5vp2:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 28505372
    415810 5vp2:1G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 28505372
    415811 5vp2:1G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 28505372
    415812 5vp2:1G (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 28505372
    415813 5vp2:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 28505372
    415814 5vp2:1H (2.8) BS01 rna ? GO:0002181 ... P0DOY8 28505372
    415815 5vp2:1I (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 28505372
    415816 5vp2:1N (2.8) BS01 rna ? GO:0003729 ... P60488 28505372
    415817 5vp2:1N (2.8) BS02 MG ? GO:0003729 ... P60488 28505372
    415818 5vp2:1N (2.8) BS03 MG ? GO:0003729 ... P60488 28505372
    415819 5vp2:1N (2.8) BS04 MG ? GO:0003729 ... P60488 28505372
    415820 5vp2:1O (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 28505372
    415821 5vp2:1O (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 28505372
    415822 5vp2:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 28505372
    415823 5vp2:1P (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 28505372
    415824 5vp2:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 28505372
    415825 5vp2:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 28505372
    415826 5vp2:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 28505372
    415827 5vp2:1P (2.8) BS05 MG ? GO:0003735 ... Q5SHQ7 28505372
    415828 5vp2:1Q (2.8) BS01 rna ? GO:0000049 ... P60489 28505372
    415829 5vp2:1Q (2.8) BS02 rna ? GO:0000049 ... P60489 28505372
    415830 5vp2:1Q (2.8) BS03 rna ? GO:0000049 ... P60489 28505372
    415831 5vp2:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 28505372
    415832 5vp2:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 28505372
    415833 5vp2:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 28505372
    415834 5vp2:1Q (2.8) BS07 MG ? GO:0000049 ... P60489 28505372
    415835 5vp2:1Q (2.8) BS08 MG ? GO:0000049 ... P60489 28505372
    415836 5vp2:1R (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 28505372
    415837 5vp2:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 28505372
    415838 5vp2:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 28505372
    415839 5vp2:1S (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 28505372
    415840 5vp2:1S (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 28505372
    415841 5vp2:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 28505372
    415842 5vp2:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 28505372
    415843 5vp2:1T (2.8) BS01 rna ? GO:0003735 ... P60490 28505372
    415844 5vp2:1T (2.8) BS02 rna ? GO:0003735 ... P60490 28505372
    415845 5vp2:1T (2.8) BS03 MG ? GO:0003735 ... P60490 28505372
    415846 5vp2:1U (2.8) BS01 rna ? GO:0000027 ... P60491 28505372
    415847 5vp2:1U (2.8) BS02 MG ? GO:0000027 ... P60491 28505372
    415848 5vp2:1U (2.8) BS03 MG ? GO:0000027 ... P60491 28505372
    415849 5vp2:1U (2.8) BS04 MG ? GO:0000027 ... P60491 28505372
    415850 5vp2:1U (2.8) BS05 MG ? GO:0000027 ... P60491 28505372
    415851 5vp2:1U (2.8) BS06 MG ? GO:0000027 ... P60491 28505372
    415852 5vp2:1U (2.8) BS07 MG ? GO:0000027 ... P60491 28505372
    415853 5vp2:1V (2.8) BS01 rna ? GO:0003723 ... P60492 28505372
    415854 5vp2:1V (2.8) BS02 MG ? GO:0003723 ... P60492 28505372
    415855 5vp2:1V (2.8) BS03 MG ? GO:0003723 ... P60492 28505372
    415856 5vp2:1V (2.8) BS04 MG ? GO:0003723 ... P60492 28505372
    415857 5vp2:1V (2.8) BS05 MG ? GO:0003723 ... P60492 28505372
    415858 5vp2:1V (2.8) BS06 MG ? GO:0003723 ... P60492 28505372
    415859 5vp2:1W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 28505372
    415860 5vp2:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 28505372
    415861 5vp2:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 28505372
    415862 5vp2:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 28505372
    415863 5vp2:1X (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 28505372
    415864 5vp2:1X (2.8) BS02 MG ? GO:0003735 ... Q5SHP0 28505372
    415865 5vp2:1X (2.8) BS03 MG ? GO:0003735 ... Q5SHP0 28505372
    415866 5vp2:1X (2.8) BS04 MG ? GO:0003735 ... Q5SHP0 28505372
    415867 5vp2:1X (2.8) BS05 MG ? GO:0003735 ... Q5SHP0 28505372
    415868 5vp2:1X (2.8) BS06 MG ? GO:0003735 ... Q5SHP0 28505372
    415869 5vp2:1Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 28505372
    415870 5vp2:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 28505372
    415871 5vp2:1Y (2.8) BS03 MG ? GO:0003723 ... Q5SHP9 28505372
    415872 5vp2:1Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 28505372
    415873 5vp2:1Z (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 28505372
    415874 5vp2:1b (2.8) BS01 rna ? GO:0003735 ... P80371 28505372
    415875 5vp2:1b (2.8) BS02 MG ? GO:0003735 ... P80371 28505372
    415876 5vp2:1c (2.8) BS01 rna ? GO:0003676 ... P80372 28505372
    415877 5vp2:1d (2.8) BS01 rna ? GO:0003723 ... P80373 28505372
    415878 5vp2:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 28505372
    415879 5vp2:1e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 28505372
    415880 5vp2:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 28505372
    415881 5vp2:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 28505372
    415882 5vp2:1f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 28505372
    415883 5vp2:1f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 28505372
    415884 5vp2:1g (2.8) BS01 rna ? GO:0000049 ... P17291 28505372
    415885 5vp2:1g (2.8) BS02 rna ? GO:0000049 ... P17291 28505372
    415886 5vp2:1h (2.8) BS01 rna ? GO:0003735 ... P0DOY9 28505372
    415887 5vp2:1i (2.8) BS01 rna ? GO:0000049 ... P80374 28505372
    415888 5vp2:1i (2.8) BS02 rna ? GO:0000049 ... P80374 28505372
    415889 5vp2:1j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 28505372
    415890 5vp2:1k (2.8) BS01 rna ? GO:0003735 ... P80376 28505372
    415891 5vp2:1k (2.8) BS02 MG ? GO:0003735 ... P80376 28505372
    415892 5vp2:1l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 28505372
    415893 5vp2:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 28505372
    415894 5vp2:1m (2.8) BS01 rna ? GO:0000049 ... P80377 28505372
    415895 5vp2:1m (2.8) BS02 rna ? GO:0000049 ... P80377 28505372
    415896 5vp2:1m (2.8) BS03 rna ? GO:0000049 ... P80377 28505372
    415897 5vp2:1m (2.8) BS04 rna ? GO:0000049 ... P80377 28505372
    415898 5vp2:1n (2.8) BS01 rna ? GO:0003735 ... P0DOY6 28505372
    415899 5vp2:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 28505372
    415900 5vp2:1n (2.8) BS03 MG ? GO:0003735 ... P0DOY6 28505372
    415901 5vp2:1o (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 28505372
    415902 5vp2:1o (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 28505372
    415903 5vp2:1p (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 28505372
    415904 5vp2:1q (2.8) BS01 rna ? GO:0003735 ... P0DOY7 28505372
    415905 5vp2:1r (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 28505372
    415906 5vp2:1s (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 28505372
    415907 5vp2:1t (2.8) BS01 rna ? GO:0003723 ... P80380 28505372
    415908 5vp2:20 (2.8) BS01 rna ? GO:0003735 ... P60493 28505372
    415909 5vp2:20 (2.8) BS02 rna ? GO:0003735 ... P60493 28505372
    415910 5vp2:21 (2.8) BS01 rna ? GO:0003735 ... P60494 28505372
    415911 5vp2:21 (2.8) BS02 rna ? GO:0003735 ... P60494 28505372
    415912 5vp2:21 (2.8) BS03 MG ? GO:0003735 ... P60494 28505372
    415913 5vp2:22 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 28505372
    415914 5vp2:23 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 28505372
    415915 5vp2:23 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 28505372
    415916 5vp2:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 28505372
    415917 5vp2:23 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 28505372
    415918 5vp2:24 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 28505372
    415919 5vp2:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 28505372
    415920 5vp2:25 (2.8) BS01 rna ? GO:0003735 ... P80339 28505372
    415921 5vp2:25 (2.8) BS02 MG ? GO:0003735 ... P80339 28505372
    415922 5vp2:25 (2.8) BS03 ZN ? GO:0003735 ... P80339 28505372
    415923 5vp2:26 (2.8) BS01 rna ? GO:0000049 ... P35871 28505372
    415924 5vp2:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 28505372
    415925 5vp2:26 (2.8) BS03 MG ? GO:0000049 ... P35871 28505372
    415926 5vp2:27 (2.8) BS01 rna ? GO:0003735 ... P80340 28505372
    415927 5vp2:28 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 28505372
    415928 5vp2:29 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 28505372
    415929 5vp2:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 28505372
    415930 5vp2:2D (2.8) BS01 rna ? GO:0002181 ... P60405 28505372
    415931 5vp2:2D (2.8) BS02 rna ? GO:0002181 ... P60405 28505372
    415932 5vp2:2D (2.8) BS03 MG ? GO:0002181 ... P60405 28505372
    415933 5vp2:2D (2.8) BS04 MG ? GO:0002181 ... P60405 28505372
    415934 5vp2:2D (2.8) BS05 MG ? GO:0002181 ... P60405 28505372
    415935 5vp2:2D (2.8) BS06 MG ? GO:0002181 ... P60405 28505372
    415936 5vp2:2D (2.8) BS07 MG ? GO:0002181 ... P60405 28505372
    415937 5vp2:2E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 28505372
    415938 5vp2:2F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 28505372
    415939 5vp2:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 28505372
    415940 5vp2:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 28505372
    415941 5vp2:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 28505372
    415942 5vp2:2G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 28505372
    415943 5vp2:2G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 28505372
    415944 5vp2:2G (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 28505372
    415945 5vp2:2H (2.8) BS01 rna ? GO:0002181 ... P0DOY8 28505372
    415946 5vp2:2I (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 28505372
    415947 5vp2:2N (2.8) BS01 rna ? GO:0003729 ... P60488 28505372
    415948 5vp2:2O (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 28505372
    415949 5vp2:2O (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 28505372
    415950 5vp2:2P (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 28505372
    415951 5vp2:2Q (2.8) BS01 rna ? GO:0000049 ... P60489 28505372
    415952 5vp2:2Q (2.8) BS02 rna ? GO:0000049 ... P60489 28505372
    415953 5vp2:2Q (2.8) BS03 rna ? GO:0000049 ... P60489 28505372
    415954 5vp2:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 28505372
    415955 5vp2:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 28505372
    415956 5vp2:2Q (2.8) BS06 MG ? GO:0000049 ... P60489 28505372
    415957 5vp2:2R (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 28505372
    415958 5vp2:2S (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 28505372
    415959 5vp2:2S (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 28505372
    415960 5vp2:2T (2.8) BS01 rna ? GO:0003735 ... P60490 28505372
    415961 5vp2:2T (2.8) BS02 rna ? GO:0003735 ... P60490 28505372
    415962 5vp2:2U (2.8) BS01 rna ? GO:0000027 ... P60491 28505372
    415963 5vp2:2U (2.8) BS02 MG ? GO:0000027 ... P60491 28505372
    415964 5vp2:2U (2.8) BS03 MG ? GO:0000027 ... P60491 28505372
    415965 5vp2:2U (2.8) BS04 MG ? GO:0000027 ... P60491 28505372
    415966 5vp2:2V (2.8) BS01 rna ? GO:0003723 ... P60492 28505372
    415967 5vp2:2V (2.8) BS02 MG ? GO:0003723 ... P60492 28505372
    415968 5vp2:2W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 28505372
    415969 5vp2:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 28505372
    415970 5vp2:2X (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 28505372
    415971 5vp2:2X (2.8) BS02 MG ? GO:0003735 ... Q5SHP0 28505372
    415972 5vp2:2Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 28505372
    415973 5vp2:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 28505372
    415974 5vp2:2Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 28505372
    415975 5vp2:2Z (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 28505372
    415976 5vp2:2Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 28505372
    415977 5vp2:2b (2.8) BS01 rna ? GO:0003735 ... P80371 28505372
    415978 5vp2:2c (2.8) BS01 rna ? GO:0003676 ... P80372 28505372
    415979 5vp2:2d (2.8) BS01 rna ? GO:0003723 ... P80373 28505372
    415980 5vp2:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 28505372
    415981 5vp2:2d (2.8) BS03 MG ? GO:0003723 ... P80373 28505372
    415982 5vp2:2e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 28505372
    415983 5vp2:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 28505372
    415984 5vp2:2f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 28505372
    415985 5vp2:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 28505372
    415986 5vp2:2g (2.8) BS01 rna ? GO:0000049 ... P17291 28505372
    415987 5vp2:2g (2.8) BS02 rna ? GO:0000049 ... P17291 28505372
    415988 5vp2:2h (2.8) BS01 rna ? GO:0003735 ... P0DOY9 28505372
    415989 5vp2:2i (2.8) BS01 rna ? GO:0000049 ... P80374 28505372
    415990 5vp2:2i (2.8) BS02 rna ? GO:0000049 ... P80374 28505372
    415991 5vp2:2j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 28505372
    415992 5vp2:2k (2.8) BS01 rna ? GO:0003735 ... P80376 28505372
    415993 5vp2:2k (2.8) BS02 MG ? GO:0003735 ... P80376 28505372
    415994 5vp2:2l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 28505372
    415995 5vp2:2l (2.8) BS02 rna ? GO:0000049 ... Q5SHN3 28505372
    415996 5vp2:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 28505372
    415997 5vp2:2m (2.8) BS01 rna ? GO:0000049 ... P80377 28505372
    415998 5vp2:2m (2.8) BS02 rna ? GO:0000049 ... P80377 28505372
    415999 5vp2:2m (2.8) BS03 rna ? GO:0000049 ... P80377 28505372
    416000 5vp2:2n (2.8) BS01 rna ? GO:0003735 ... P0DOY6 28505372

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).