SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    417201 5vvr:B (5.8) BS01 dna 2.7.7.6 GO:0000428 ... P08518 29168508
    417202 5vvr:B (5.8) BS02 dna 2.7.7.6 GO:0000428 ... P08518 29168508
    417203 5vvr:B (5.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 29168508
    417204 5vvr:C (5.8) BS01 ZN ? GO:0000428 ... P16370 29168508
    417205 5vvr:I (5.8) BS01 ZN ? GO:0000428 ... P27999 29168508
    417206 5vvr:J (5.8) BS01 ZN ? GO:0000428 ... P22139 29168508
    417207 5vvr:L (5.8) BS01 ZN ? GO:0000428 ... P40422 29168508
    417208 5vvr:M (5.8) BS01 dna 3.6.4.12 GO:0000785 ... P40352 29168508
    417209 5vvr:M (5.8) BS02 dna 3.6.4.12 GO:0000785 ... P40352 29168508
    417210 5vvs:A (6.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 29168508
    417211 5vvs:A (6.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 29168508
    417212 5vvs:A (6.4) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29168508
    417213 5vvs:A (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29168508
    417214 5vvs:B (6.4) BS01 dna 2.7.7.6 GO:0000428 ... P08518 29168508
    417215 5vvs:B (6.4) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 29168508
    417216 5vvs:C (6.4) BS01 ZN ? GO:0000428 ... P16370 29168508
    417217 5vvs:I (6.4) BS01 ZN ? GO:0000428 ... P27999 29168508
    417218 5vvs:J (6.4) BS01 ZN ? GO:0000428 ... P22139 29168508
    417219 5vvs:L (6.4) BS01 ZN ? GO:0000428 ... P40422 29168508
    417220 5vvt:A (2.8) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417221 5vvt:C (2.8) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417222 5vvt:C (2.8) BS02 peptide 3.2.1.169 N/A O60502 28939839
    417223 5vvu:A (2.7) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417224 5vvu:A (2.7) BS02 peptide 3.2.1.169 N/A O60502 28939839
    417225 5vvu:C (2.7) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417226 5vvu:C (2.7) BS02 peptide 3.2.1.169 N/A O60502 28939839
    417227 5vvv:A (2.8) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417228 5vvv:C (2.8) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417229 5vvv:C (2.8) BS02 peptide 3.2.1.169 N/A O60502 28939839
    417230 5vvx:C (2.9) BS01 peptide 3.2.1.169 N/A O60502 28939839
    417231 5vvx:C (2.9) BS02 peptide 3.2.1.169 N/A O60502 28939839
    417232 5vw1:A (2.598) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 28602637
    417233 5vw2:A (1.451) BS01 FDA 1.18.1.2 GO:0016491 ... B4G043 28783258
    417234 5vw2:A (1.451) BS02 NAP 1.18.1.2 GO:0016491 ... B4G043 28783258 MOAD: Kd<0.02uM
    417235 5vw3:A (1.453) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417236 5vw3:A (1.453) BS02 NAP 1.18.1.2 GO:0016491 ... B4G043 28783258 MOAD: Kd<0.02uM
    417237 5vw4:A (1.351) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417238 5vw4:A (1.351) BS02 NCA 1.18.1.2 GO:0016491 ... B4G043 28783258
    417239 5vw5:A (1.953) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417240 5vw5:A (1.953) BS02 NCA 1.18.1.2 GO:0016491 ... B4G043 28783258
    417241 5vw6:A (1.5) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417242 5vw6:A (1.5) BS02 NAP 1.18.1.2 GO:0016491 ... B4G043 28783258
    417243 5vw7:A (1.608) BS01 NAP 1.18.1.2 GO:0016491 ... B4G043 28783258
    417244 5vw7:A (1.608) BS02 FDA 1.18.1.2 GO:0016491 ... B4G043 28783258
    417245 5vw8:A (1.808) BS01 NAP 1.18.1.2 GO:0016491 ... B4G043 28783258 MOAD: Kd<0.02uM
    417246 5vw8:A (1.808) BS02 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417247 5vw9:A (1.894) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417248 5vw9:A (1.894) BS02 NCA 1.18.1.2 GO:0016491 ... B4G043 28783258
    417249 5vwa:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417250 5vwb:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28783258
    417251 5vwb:A (1.8) BS02 NAP 1.18.1.2 GO:0016491 ... B4G043 28783258
    417252 5vwd:A (1.8) BS01 peptide ? N/A P01889 30410026
    417253 5vwf:A (1.8) BS01 peptide ? N/A P01889 30410026
    417254 5vwg:A (2.1) BS01 9QG ? GO:0030246 ... O00214 N/A
    417255 5vwh:A (1.648) BS01 peptide ? N/A P01889 30410026
    417256 5vwi:A (1.75) BS01 peptide ? N/A Q14160 29061852
    417257 5vwi:B (1.75) BS01 peptide ? N/A Q14160 29061852
    417258 5vwj:A (2.0) BS01 peptide ? N/A P01889 30410026
    417259 5vwk:A (2.35) BS01 peptide ? N/A Q14160 29061852
    417260 5vwk:B (2.35) BS01 peptide ? N/A Q14160 29061852
    417261 5vwk:C (2.35) BS01 peptide ? N/A Q14160 29061852
    417262 5vwk:D (2.35) BS01 peptide ? N/A Q14160 29061852
    417263 5vwm:A (1.8) BS01 C90 3.5.1.108 GO:0006796 ... P47205 N/A BindingDB: IC50=<2.1nM, Kd=0.480000nM
    417264 5vwm:A (1.8) BS02 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    417265 5vwm:A (1.8) BS03 CA 3.5.1.108 GO:0006796 ... P47205 N/A
    417266 5vwo:A (1.773) BS01 9QJ 2.6.1.13 GO:0004587 ... P04181 28816437
    417267 5vwo:B (1.773) BS01 9QJ 2.6.1.13 GO:0004587 ... P04181 28816437
    417268 5vwo:C (1.773) BS01 9QJ 2.6.1.13 GO:0004587 ... P04181 28816437
    417269 5vwq:A (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    417270 5vwq:D (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    417271 5vwq:G (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    417272 5vwq:J (1.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 28816437
    417273 5vwr:A (1.72) BS01 PL6 2.6.1.1 GO:0003824 ... P00509 28816437
    417274 5vws:A (2.411) BS01 HEM ? GO:0004497 ... D6Y4Z8 28535034
    417275 5vwt:A (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417276 5vwt:A (2.75) BS02 NDP 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417277 5vwt:B (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417278 5vwt:B (2.75) BS02 NDP 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417279 5vwt:C (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417280 5vwt:C (2.75) BS02 NDP 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417281 5vwt:D (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417282 5vwt:D (2.75) BS02 NDP 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417283 5vwu:A (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417284 5vwu:A (2.75) BS02 NAI 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417285 5vwu:B (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417286 5vwu:B (2.75) BS02 NAI 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417287 5vwu:C (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417288 5vwu:D (2.75) BS01 FAD 5.4.99.9 GO:0000166 ... Q4W1X2 23036087
    417289 5vwv:A (1.897) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417290 5vwv:A (1.897) BS02 TFA ? GO:0042981 ... Q16611 29149594
    417291 5vww:A (2.802) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417292 5vww:B (2.802) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417293 5vww:B (2.802) BS02 peptide ? GO:0042981 ... Q16611 29149594
    417294 5vwx:A (2.489) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417295 5vwx:C (2.489) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417296 5vwy:A (1.555) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417297 5vwz:A (1.622) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417298 5vwz:A (1.622) BS02 peptide ? GO:0042981 ... Q16611 29149594
    417299 5vwz:C (1.622) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417300 5vwz:C (1.622) BS02 peptide ? GO:0042981 ... Q16611 29149594
    417301 5vx0:A (1.599) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417302 5vx0:A (1.599) BS02 MG ? GO:0042981 ... Q16611 29149594
    417303 5vx0:A (1.599) BS03 MG ? GO:0042981 ... Q16611 29149594
    417304 5vx0:A (1.599) BS04 MG ? GO:0042981 ... Q16611 29149594
    417305 5vx0:C (1.599) BS01 peptide ? GO:0042981 ... Q16611 29149594
    417306 5vx2:A (1.851) BS01 peptide ? GO:0042981 ... P97287
    Q07820
    29149594
    417307 5vx2:A (1.851) BS02 peptide ? GO:0042981 ... P97287
    Q07820
    29149594
    417308 5vx2:C (1.851) BS01 peptide ? GO:0042981 ... P97287
    Q07820
    29149594
    417309 5vx2:C (1.851) BS02 peptide ? GO:0042981 ... P97287
    Q07820
    29149594
    417310 5vx3:A (1.945) BS01 peptide ? GO:0042981 ... Q07817 29149594
    417311 5vx3:C (1.945) BS01 peptide ? GO:0042981 ... Q07817 29149594
    417312 5vx3:E (1.945) BS01 peptide ? GO:0042981 ... Q07817 29149594
    417313 5vx3:G (1.945) BS01 peptide ? GO:0042981 ... Q07817 29149594
    417314 5vx5:A (1.285) BS01 GAL ? GO:0019028 ... Q2VE61 29980685
    417315 5vx6:A (3.197) BS01 C2E ? GO:0035438 ... P38491 29196522
    417316 5vx6:A (3.197) BS02 C2E ? GO:0035438 ... P38491 29196522
    417317 5vx6:B (3.197) BS01 C2E ? GO:0035438 ... P38491 29196522
    417318 5vx6:B (3.197) BS02 C2E ? GO:0035438 ... P38491 29196522
    417319 5vx9:A (1.822) BS01 BGC ? GO:0019028 ... D7F7M7 29980685
    417320 5vx9:A (1.822) BS02 GAL ? GO:0019028 ... D7F7M7 29980685
    417321 5vxa:A (2.1) BS01 ZN 3.1.7.2 GO:0005515 ... Q8N4P3 32462112
    417322 5vxa:A (2.1) BS02 NDP 3.1.7.2 GO:0005515 ... Q8N4P3 32462112
    417323 5vxa:B (2.1) BS01 ZN 3.1.7.2 GO:0005515 ... Q8N4P3 32462112
    417324 5vxa:B (2.1) BS02 NDP 3.1.7.2 GO:0005515 ... Q8N4P3 32462112
    417325 5vxc:A (1.872) BS01 COA 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417326 5vxc:A (1.872) BS02 MG 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417327 5vxe:A (1.66) BS01 CER 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    417328 5vxe:A (1.66) BS02 MN 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    417329 5vxg:A (2.07) BS01 CER 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    417330 5vxg:A (2.07) BS02 MN 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    417331 5vxi:A (2.08) BS01 MN 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    417332 5vxi:A (2.08) BS02 CER 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    417333 5vxn:A (3.375) BS01 dna ? GO:0000160 ... P0DMC7 29487239
    417334 5vxn:A (3.375) BS02 dna ? GO:0000160 ... P0DMC7 29487239
    417335 5vxn:B (3.375) BS01 dna ? GO:0000160 ... P0DMC7 29487239
    417336 5vxn:B (3.375) BS02 dna ? GO:0000160 ... P0DMC7 29487239
    417337 5vxn:C (3.375) BS01 dna ? GO:0000160 ... P0DMC7 29487239
    417338 5vxn:C (3.375) BS02 dna ? GO:0000160 ... P0DMC7 29487239
    417339 5vxn:D (3.375) BS01 dna ? GO:0000160 ... P0DMC7 29487239
    417340 5vxn:D (3.375) BS02 dna ? GO:0000160 ... P0DMC7 29487239
    417341 5vxo:A (2.266) BS01 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417342 5vxo:B (2.266) BS01 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417343 5vxo:B (2.266) BS02 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417344 5vxo:C (2.266) BS01 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417345 5vxo:C (2.266) BS02 1VU 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25
    GO:0000287 ... Q8N0X4 29056341
    417346 5vxr:H (1.4) BS01 peptide ? N/A Q569X1 29467319
    417347 5vxr:L (1.4) BS01 peptide ? N/A A0A125T908 29467319
    417348 5vxt:A (1.75) BS01 FE 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    417349 5vxt:A (1.75) BS02 CAQ 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    417350 5vxt:B (1.75) BS01 FE 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    417351 5vxt:B (1.75) BS02 CAQ 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    417352 5vxx:A (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417353 5vxx:A (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417354 5vxx:B (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417355 5vxx:B (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417356 5vxx:C (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417357 5vxx:C (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417358 5vxx:D (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417359 5vxx:D (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417360 5vxx:E (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417361 5vxx:E (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417362 5vxx:F (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417363 5vxx:F (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417364 5vxx:G (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417365 5vxx:G (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417366 5vxx:H (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417367 5vxx:H (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417368 5vxx:I (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417369 5vxx:I (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417370 5vxx:J (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417371 5vxx:J (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417372 5vxx:K (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417373 5vxx:K (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417374 5vxx:L (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417375 5vxx:L (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417376 5vxx:M (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417377 5vxx:M (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417378 5vxx:N (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417379 5vxx:N (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417380 5vxx:O (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417381 5vxx:O (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417382 5vxx:P (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417383 5vxx:P (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417384 5vxx:Q (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417385 5vxx:Q (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417386 5vxx:R (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417387 5vxx:R (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417388 5vxx:S (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417389 5vxx:S (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417390 5vxx:T (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417391 5vxx:T (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417392 5vxx:U (5.1) BS01 B6D ? GO:0007155 ... P02974 28877506
    417393 5vxx:U (5.1) BS02 OPE ? GO:0007155 ... P02974 28877506
    417394 5vxz:A (2.3) BS01 CA ? N/A Q14393 27893463
    417395 5vxz:B (2.3) BS01 CA ? N/A Q14393 27893463
    417396 5vy8:A (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    417397 5vy8:A (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    417398 5vy8:B (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    417399 5vy8:B (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    417400 5vy8:C (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).