SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    417601 5vyc:X1 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    417602 5vyc:X2 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    417603 5vyc:X3 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    417604 5vyc:X4 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    417605 5vyc:X5 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    417606 5vyc:X6 (6.0) BS01 rna ? GO:0002181 ... P62266 28723557
    417607 5vyc:Y1 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    417608 5vyc:Y2 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    417609 5vyc:Y3 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    417610 5vyc:Y4 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    417611 5vyc:Y5 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    417612 5vyc:Y6 (6.0) BS01 rna ? GO:0002181 ... P62847 28723557
    417613 5vyc:Z1 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    417614 5vyc:Z2 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    417615 5vyc:Z3 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    417616 5vyc:Z3 (6.0) BS02 rna ? GO:0002181 ... P62851 28723557
    417617 5vyc:Z4 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    417618 5vyc:Z5 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    417619 5vyc:Z5 (6.0) BS02 rna ? GO:0002181 ... P62851 28723557
    417620 5vyc:Z6 (6.0) BS01 rna ? GO:0002181 ... P62851 28723557
    417621 5vyc:a1 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    417622 5vyc:a2 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    417623 5vyc:a3 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    417624 5vyc:a4 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    417625 5vyc:a5 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    417626 5vyc:a6 (6.0) BS01 rna ? GO:0002181 ... P62854 28723557
    417627 5vyc:b1 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    417628 5vyc:b2 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    417629 5vyc:b3 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    417630 5vyc:b4 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    417631 5vyc:b5 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    417632 5vyc:b6 (6.0) BS01 rna ? GO:0000028 ... P42677 28723557
    417633 5vyc:c1 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    417634 5vyc:c2 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    417635 5vyc:c3 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    417636 5vyc:c4 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    417637 5vyc:c5 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    417638 5vyc:c6 (6.0) BS01 rna ? GO:0000028 ... P62857 28723557
    417639 5vyc:d1 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    417640 5vyc:d2 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    417641 5vyc:d3 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    417642 5vyc:d4 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    417643 5vyc:d5 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    417644 5vyc:d6 (6.0) BS01 rna ? GO:0002181 ... P62273 28723557
    417645 5vyc:e1 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    417646 5vyc:e2 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    417647 5vyc:e3 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    417648 5vyc:e4 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    417649 5vyc:e5 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    417650 5vyc:e6 (6.0) BS01 rna ? GO:0003735 ... E9PR30 28723557
    417651 5vyc:f1 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    417652 5vyc:f1 (6.0) BS02 rna ? GO:0003735 ... Q5RKT7 28723557
    417653 5vyc:f2 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    417654 5vyc:f2 (6.0) BS02 rna ? GO:0003735 ... Q5RKT7 28723557
    417655 5vyc:f2 (6.0) BS03 ZN ? GO:0003735 ... Q5RKT7 28723557
    417656 5vyc:f3 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    417657 5vyc:f3 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    417658 5vyc:f4 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    417659 5vyc:f4 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    417660 5vyc:f5 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    417661 5vyc:f5 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    417662 5vyc:f6 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    417663 5vyc:f6 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    417664 5vyc:g1 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    417665 5vyc:g2 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    417666 5vyc:g3 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    417667 5vyc:g4 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    417668 5vyc:g5 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    417669 5vyc:g6 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    417670 5vyc:k1 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    417671 5vyc:k1 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    417672 5vyc:k2 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    417673 5vyc:k2 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    417674 5vyc:k3 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    417675 5vyc:k3 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    417676 5vyc:k4 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    417677 5vyc:k4 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    417678 5vyc:k5 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    417679 5vyc:k5 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    417680 5vyc:k6 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    417681 5vyc:k6 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    417682 5vyc:l1 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    417683 5vyc:l2 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    417684 5vyc:l3 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    417685 5vyc:l4 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    417686 5vyc:l5 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    417687 5vyc:l6 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    417688 5vyd:A (2.3) BS01 ZN 3.1.4.- GO:0004114 ... F2TZN0 28976747
    417689 5vyd:B (2.3) BS01 ZN 3.1.4.- GO:0004114 ... F2TZN0 28976747
    417690 5vye:A (2.275) BS01 PLR 4.1.2.48 GO:0004793 ... A0A166JNM8 N/A
    417691 5vye:B (2.275) BS01 PLR 4.1.2.48 GO:0004793 ... A0A166JNM8 N/A
    417692 5vye:C (2.275) BS01 PLR 4.1.2.48 GO:0004793 ... A0A166JNM8 N/A
    417693 5vye:D (2.275) BS01 PLR 4.1.2.48 GO:0004793 ... A0A166JNM8 N/A
    417694 5vyg:A (2.2) BS01 BGC 3.4.21.22 GO:0005509 ... P00740 28729422
    417695 5vyg:A (2.2) BS02 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    417696 5vyg:A (2.2) BS03 CA 3.4.21.22 GO:0005509 ... P00740 28729422
    417697 5vyg:B (2.2) BS01 BGC 3.4.21.22 GO:0005509 ... P00740 28729422
    417698 5vyg:B (2.2) BS02 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    417699 5vyg:B (2.2) BS03 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    417700 5vyg:B (2.2) BS04 CA 3.4.21.22 GO:0005509 ... P00740 28729422
    417701 5vyg:C (2.2) BS01 BGC 3.4.21.22 GO:0005509 ... P00740 28729422
    417702 5vyg:C (2.2) BS02 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    417703 5vyg:C (2.2) BS03 XYS 3.4.21.22 GO:0005509 ... P00740 28729422
    417704 5vyg:C (2.2) BS04 CA 3.4.21.22 GO:0005509 ... P00740 28729422
    417705 5vyj:A (3.3) BS01 GLY 4.1.1.31 GO:0003824 ... P04711 29743237
    417706 5vyj:B (3.3) BS01 GLY 4.1.1.31 GO:0003824 ... P04711 29743237
    417707 5vyj:B (3.3) BS02 GLY 4.1.1.31 GO:0003824 ... P04711 29743237
    417708 5vyj:B (3.3) BS03 GLY 4.1.1.31 GO:0003824 ... P04711 29743237
    417709 5vyj:C (3.3) BS01 GLY 4.1.1.31 GO:0003824 ... P04711 29743237
    417710 5vyj:D (3.3) BS01 GLY 4.1.1.31 GO:0003824 ... P04711 29743237
    417711 5vyo:A (2.49) BS01 peptide ? GO:0016491 ... Q63Y08 29440370
    417712 5vyo:A (2.49) BS02 peptide ? GO:0016491 ... Q63Y08 29440370
    417713 5vyo:B (2.49) BS01 peptide ? GO:0016491 ... Q63Y08 29440370
    417714 5vyo:B (2.49) BS02 peptide ? GO:0016491 ... Q63Y08 29440370
    417715 5vyo:C (2.49) BS01 peptide ? GO:0016491 ... Q63Y08 29440370
    417716 5vyo:D (2.49) BS01 peptide ? GO:0016491 ... Q63Y08 29440370
    417717 5vyp:A (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417718 5vyp:B (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417719 5vyp:C (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417720 5vyp:C (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417721 5vyp:D (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417722 5vyp:D (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417723 5vyp:D (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    417724 5vyp:E (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417725 5vyp:F (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417726 5vyp:G (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417727 5vyp:G (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417728 5vyp:H (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417729 5vyp:H (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417730 5vyp:H (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    417731 5vyp:I (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417732 5vyp:I (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417733 5vyp:J (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417734 5vyp:J (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417735 5vyp:K (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417736 5vyp:L (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417737 5vyp:L (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417738 5vyp:M (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417739 5vyp:M (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417740 5vyp:N (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417741 5vyp:N (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417742 5vyp:O (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417743 5vyp:O (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417744 5vyp:P (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417745 5vyp:P (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417746 5vyp:Q (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417747 5vyp:Q (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417748 5vyp:Q (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    417749 5vyp:R (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417750 5vyp:S (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417751 5vyp:S (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417752 5vyp:T (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417753 5vyp:T (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417754 5vyp:T (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    417755 5vyp:U (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417756 5vyp:U (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417757 5vyp:U (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    417758 5vyp:V (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417759 5vyp:V (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417760 5vyp:W (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417761 5vyp:X (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    417762 5vyp:X (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    417763 5vyq:A (1.6) BS01 FON 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    417764 5vyq:A (1.6) BS02 0FX 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    417765 5vyq:A (1.6) BS03 EP1 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    417766 5vyq:B (1.6) BS01 TYD 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    417767 5vyq:B (1.6) BS02 EP1 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    417768 5vyr:A (1.7) BS01 B62 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417769 5vyr:A (1.7) BS02 GMP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417770 5vyr:B (1.7) BS01 B62 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417771 5vyr:B (1.7) BS02 GMP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417772 5vyr:B (1.7) BS03 GMP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417773 5vys:A (2.2) BS01 1YJ 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417774 5vys:A (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417775 5vys:B (2.2) BS01 1YJ 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417776 5vys:B (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417777 5vys:B (2.2) BS03 GMP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417778 5vyt:A (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417779 5vyt:A (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417780 5vyt:B (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417781 5vyt:B (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417782 5vyt:C (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417783 5vyt:C (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417784 5vyt:D (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417785 5vyt:D (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417786 5vyu:A (2.2) BS01 1YA 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417787 5vyu:A (2.2) BS02 JB2 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417788 5vyu:B (2.2) BS01 1YA 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417789 5vyu:B (2.2) BS02 GDP 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    417790 5vyw:A (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    417791 5vyw:A (3.1) BS02 BTN N/A GO:0003824 ... N/A 28808024
    417792 5vyw:B (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    417793 5vyw:C (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    417794 5vyw:D (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    417795 5vyy:A (1.792) BS01 9QY 3.6.4.10 GO:0005524 ... P07900 29528635 MOAD: Kd=0.62uM
    BindingDB: Kd=620nM, IC50=13200nM, Ki=1800nM
    417796 5vyz:A (2.3) BS01 MN N/A GO:0003824 ... N/A 28808024
    417797 5vyz:A (2.3) BS02 ADP N/A GO:0003824 ... N/A 28808024
    417798 5vyz:A (2.3) BS03 MG N/A GO:0003824 ... N/A 28808024
    417799 5vyz:A (2.3) BS04 2BA N/A GO:0003824 ... N/A 28808024
    417800 5vyz:B (2.3) BS01 2BA N/A GO:0003824 ... N/A 28808024

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).