SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41601 1peg:B (2.59) BS03 SAH 2.1.1.355 GO:0003690 ... Q8X225 12887903
    41602 1pek:E (2.2) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 8340410
    41603 1pek:E (2.2) BS02 peptide 3.4.21.64 GO:0004252 ... P06873 8340410
    41604 1peo:A (3.0) BS01 DCP 1.17.4.1 GO:0004748 ... Q08698 12818204
    41605 1peq:A (2.8) BS01 TTP 1.17.4.1 GO:0004748 ... Q08698 12818204
    41606 1per:L (2.5) BS01 dna ? GO:0003677 ... P16117 8081737
    41607 1per:L (2.5) BS02 dna ? GO:0003677 ... P16117 8081737
    41608 1per:R (2.5) BS01 dna ? GO:0003677 ... P16117 8081737
    41609 1per:R (2.5) BS02 dna ? GO:0003677 ... P16117 8081737
    41610 1peu:A (3.2) BS01 DTP 1.17.4.1 GO:0004748 ... Q08698 12818204
    41611 1pex:A (2.7) BS01 CL 3.4.24.- N/A P45452 8969305
    41612 1pex:A (2.7) BS02 CA 3.4.24.- N/A P45452 8969305
    41613 1pex:A (2.7) BS03 CA 3.4.24.- N/A P45452 8969305
    41614 1pey:A (2.25) BS01 MN 2.7.-.- GO:0000156 ... P06628 15039551
    41615 1pey:B (2.25) BS01 MN 2.7.-.- GO:0000156 ... P06628 15039551
    41616 1pey:C (2.25) BS01 MN 2.7.-.- GO:0000156 ... P06628 15039551
    41617 1pez:A (2.32) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12809508
    41618 1pez:A (2.32) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41619 1pez:A (2.32) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41620 1pez:A (2.32) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41621 1pez:A (2.32) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41622 1pez:A (2.32) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41623 1pez:A (2.32) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41624 1pez:A (2.32) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12809508
    41625 1pez:A (2.32) BS09 CA 2.4.1.19 GO:0003824 ... P43379 12809508
    41626 1pez:A (2.32) BS10 CA 2.4.1.19 GO:0003824 ... P43379 12809508
    41627 1pez:A (2.32) BS11 CA 2.4.1.19 GO:0003824 ... P43379 12809508
    41628 1pf3:A (1.5) BS01 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    41629 1pf3:A (1.5) BS02 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    41630 1pf3:A (1.5) BS03 C2C 1.16.3.4 GO:0004322 ... P36649 12794077
    41631 1pf7:E (2.6) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 13679061
    41632 1pf8:A (2.51) BS01 SU9 2.7.11.22 GO:0000082 ... P24941 14550307 BindingDB: IC50=22nM
    41633 1pf9:A (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41634 1pf9:B (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41635 1pf9:C (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41636 1pf9:D (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41637 1pf9:E (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41638 1pf9:F (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41639 1pf9:G (2.993) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    41640 1pfb:A (1.4) BS01 peptide ? N/A P26017 12897052
    41641 1pfd:A (-1.00) BS01 FES 1.7.7.2 GO:0006124 ... Q7M1S1 9874213
    41642 1pfg:A (2.5) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 8976553
    41643 1pfi:B (3.0) BS01 dna ? N/A P03621 8036516
    41644 1pfk:A (2.4) BS01 FBP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41645 1pfk:A (2.4) BS02 MG 2.7.1.11 GO:0000287 ... P0A796 2975709
    41646 1pfk:A (2.4) BS03 ADP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41647 1pfk:A (2.4) BS04 ADP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41648 1pfk:A (2.4) BS05 ADP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41649 1pfk:B (2.4) BS01 ADP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41650 1pfk:B (2.4) BS02 FBP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41651 1pfk:B (2.4) BS03 MG 2.7.1.11 GO:0000287 ... P0A796 2975709
    41652 1pfk:B (2.4) BS04 ADP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41653 1pfk:B (2.4) BS05 ADP 2.7.1.11 GO:0000287 ... P0A796 2975709
    41654 1pfr:A (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    41655 1pfr:A (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    41656 1pfr:B (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    41657 1pfr:B (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    41658 1pft:A (-1.00) BS01 ZN ? GO:0006352 ... P61998 8564536
    41659 1pfu:A (1.91) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 12946347
    41660 1pfu:A (1.91) BS02 MPJ 6.1.1.10 GO:0000166 ... P00959 12946347 MOAD: Kd=1900uM
    41661 1pfv:A (1.7) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 12946347
    41662 1pfv:A (1.7) BS02 2FM 6.1.1.10 GO:0000166 ... P00959 12946347
    41663 1pfw:A (1.78) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 12946347
    41664 1pfw:A (1.78) BS02 MF3 6.1.1.10 GO:0000166 ... P00959 12946347
    41665 1pfx:C (3.0) BS01 0G6 3.4.21.22 GO:0004252 ... P16293 7568220
    41666 1pfy:A (1.93) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 12946347
    41667 1pfy:A (1.93) BS02 MSP 6.1.1.10 GO:0000166 ... P00959 12946347 MOAD: ic50~7nM
    41668 1pg0:A (1.9) BS01 MOD 6.1.1.10 GO:0000166 ... P00959 12946347 MOAD: Kd~1uM
    41669 1pg2:A (1.75) BS01 ADN 6.1.1.10 GO:0000166 ... P00959 12946347
    41670 1pg2:A (1.75) BS02 MET 6.1.1.10 GO:0000166 ... P00959 12946347
    41671 1pg3:A (2.3) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41672 1pg3:A (2.3) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41673 1pg3:A (2.3) BS03 PRX 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41674 1pg3:B (2.3) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41675 1pg3:B (2.3) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41676 1pg3:B (2.3) BS03 PRX 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41677 1pg4:A (1.75) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41678 1pg4:A (1.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41679 1pg4:A (1.75) BS03 PRX 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41680 1pg4:B (1.75) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41681 1pg4:B (1.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41682 1pg4:B (1.75) BS03 PRX 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    41683 1pg5:B (2.6) BS01 ZN ? GO:0006207 ... P74766 15165857
    41684 1pg6:A (1.7) BS01 CA N/A N/A N/A N/A
    41685 1pg6:A (1.7) BS02 CA N/A N/A N/A N/A
    41686 1pg8:A (2.68) BS01 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41687 1pg8:A (2.68) BS02 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41688 1pg8:B (2.68) BS01 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41689 1pg8:B (2.68) BS02 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41690 1pg8:C (2.68) BS01 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41691 1pg8:C (2.68) BS02 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41692 1pg8:D (2.68) BS01 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41693 1pg8:D (2.68) BS02 PLP 4.4.1.11
    4.4.1.2
    GO:0003824 ... P13254 N/A
    41694 1pge:A (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    41695 1pge:A (3.5) BS02 ISF 1.14.99.1 GO:0001516 ... P05979 8652509 BindingDB: IC50=1000nM
    41696 1pge:B (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    41697 1pge:B (3.5) BS02 ISF 1.14.99.1 GO:0001516 ... P05979 8652509 BindingDB: IC50=1000nM
    41698 1pgf:A (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    41699 1pgf:A (4.5) BS02 IMM 1.14.99.1 GO:0001516 ... P05979 8652509 BindingDB: IC50=780nM
    41700 1pgf:B (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    41701 1pgf:B (4.5) BS02 IMM 1.14.99.1 GO:0001516 ... P05979 8652509 BindingDB: IC50=780nM
    41702 1pgg:A (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    41703 1pgg:A (4.5) BS02 IMM 1.14.99.1 GO:0001516 ... P05979 8652509 BindingDB: IC50=780nM
    41704 1pgg:B (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    41705 1pgg:B (4.5) BS02 IMM 1.14.99.1 GO:0001516 ... P05979 8652509 BindingDB: IC50=780nM
    41706 1pgl:2 (2.8) BS01 rna ? GO:0005198 ... P23009 14517057
    41707 1pgn:A (2.3) BS01 NBP 1.1.1.44 GO:0004616 ... P00349 7922042
    41708 1pgn:A (2.3) BS02 POP 1.1.1.44 GO:0004616 ... P00349 7922042
    41709 1pgo:A (2.5) BS01 NDP 1.1.1.44 GO:0004616 ... P00349 7922042
    41710 1pgp:A (2.5) BS01 6PG 1.1.1.44 GO:0004616 ... P00349 7922042 MOAD: Kd=2uM
    41711 1pgq:A (3.17) BS01 2AM 1.1.1.44 GO:0004616 ... P00349 7922042
    41712 1pgt:A (1.8) BS01 GTX 2.5.1.18 GO:0000122 ... P09211 9245401
    41713 1pgt:A (1.8) BS02 EPE 2.5.1.18 GO:0000122 ... P09211 9245401
    41714 1pgt:B (1.8) BS01 GTX 2.5.1.18 GO:0000122 ... P09211 9245401
    41715 1pgt:B (1.8) BS02 EPE 2.5.1.18 GO:0000122 ... P09211 9245401
    41716 1pgu:A (2.3) BS01 ZN ? GO:0003779 ... P46680 12807914
    41717 1pgu:A (2.3) BS02 ZN ? GO:0003779 ... P46680 12807914
    41718 1pgu:B (2.3) BS01 ZN ? GO:0003779 ... P46680 12807914
    41719 1pgu:B (2.3) BS02 ZN ? GO:0003779 ... P46680 12807914
    41720 1pgz:A (2.6) BS01 dna ? GO:0003676 ... P09651 12904298
    41721 1ph0:A (2.2) BS01 418 3.1.3.48 GO:0004725 ... P18031 12877578 BindingDB: Ki=120nM
    41722 1ph1:A (2.51) BS01 dna ? GO:0000723 ... P29549 12912928
    41723 1ph1:A (2.51) BS02 dna ? GO:0000723 ... P29549 12912928
    41724 1ph1:B (2.51) BS01 dna ? GO:0000781 ... P16458 12912928
    41725 1ph2:A (3.1) BS01 dna ? GO:0000723 ... P29549 12912928
    41726 1ph2:A (3.1) BS02 dna ? GO:0000723 ... P29549 12912928
    41727 1ph2:B (3.1) BS01 dna ? GO:0000781 ... P16458 12912928
    41728 1ph3:A (2.3) BS01 dna ? GO:0000723 ... P29549 12912928
    41729 1ph3:A (2.3) BS02 dna ? GO:0000723 ... P29549 12912928
    41730 1ph3:B (2.3) BS01 dna ? GO:0000781 ... P16458 12912928
    41731 1ph4:A (2.3) BS01 dna ? GO:0000723 ... P29549 12912928
    41732 1ph4:A (2.3) BS02 dna ? GO:0000723 ... P29549 12912928
    41733 1ph4:B (2.3) BS01 dna ? GO:0000781 ... P16458 12912928
    41734 1ph5:A (2.3) BS01 dna ? GO:0000723 ... P29549 12912928
    41735 1ph5:A (2.3) BS02 dna ? GO:0000723 ... P29549 12912928
    41736 1ph5:B (2.3) BS01 dna ? GO:0000781 ... P16458 12912928
    41737 1ph6:A (2.1) BS01 dna ? GO:0000723 ... P29549 12912928
    41738 1ph6:A (2.1) BS02 dna ? GO:0000723 ... P29549 12912928
    41739 1ph6:B (2.1) BS01 dna ? GO:0000781 ... P16458 12912928
    41740 1ph7:A (2.9) BS01 dna ? GO:0000723 ... P29549 12912928
    41741 1ph7:A (2.9) BS02 dna ? GO:0000723 ... P29549 12912928
    41742 1ph7:B (2.9) BS01 dna ? GO:0000781 ... P16458 12912928
    41743 1ph8:A (2.36) BS01 dna ? GO:0000723 ... P29549 12912928
    41744 1ph8:A (2.36) BS02 dna ? GO:0000723 ... P29549 12912928
    41745 1ph8:B (2.36) BS01 dna ? GO:0000781 ... P16458 12912928
    41746 1ph9:A (2.5) BS01 dna ? GO:0000723 ... P29549 12912928
    41747 1ph9:A (2.5) BS02 dna ? GO:0000723 ... P29549 12912928
    41748 1ph9:B (2.5) BS01 dna ? GO:0000781 ... P16458 12912928
    41749 1pha:A (1.63) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 8485133
    41750 1pha:A (1.63) BS02 PFZ 1.14.15.1 GO:0004497 ... P00183 8485133
    41751 1phb:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 8485133
    41752 1phb:A (1.6) BS02 PFZ 1.14.15.1 GO:0004497 ... P00183 8485133
    41753 1phc:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3768350
    41754 1phd:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    41755 1phd:A (1.6) BS02 PIW 1.14.15.1 GO:0004497 ... P00183 3442650
    41756 1phe:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    41757 1phe:A (1.6) BS02 PIY 1.14.15.1 GO:0004497 ... P00183 3442650
    41758 1phf:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    41759 1phf:A (1.6) BS02 PIM 1.14.15.1 GO:0004497 ... P00183 3442650
    41760 1phg:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    41761 1phg:A (1.6) BS02 MYT 1.14.15.1 GO:0004497 ... P00183 3442650
    41762 1phh:A (2.3) BS01 FAD 1.14.13.2 GO:0016491 ... P00438 3351945
    41763 1phj:A (2.5) BS01 dna ? GO:0000723 ... P29549 12912928
    41764 1phj:A (2.5) BS02 dna ? GO:0000723 ... P29549 12912928
    41765 1phj:B (2.5) BS01 dna ? GO:0000781 ... P16458 12912928
    41766 1phk:A (2.2) BS01 MN 2.7.11.1
    2.7.11.19
    2.7.11.26
    GO:0004672 ... P00518 7663944
    41767 1phk:A (2.2) BS02 ATP 2.7.11.1
    2.7.11.19
    2.7.11.26
    GO:0004672 ... P00518 7663944
    41768 1phm:A (1.9) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 9360928
    41769 1phm:A (1.9) BS02 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 9360928
    41770 1phm:A (1.9) BS03 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 9360928
    41771 1phn:B (1.65) BS01 PEB ? GO:0009535 ... P00311 10354419
    41772 1php:A (1.65) BS01 ADP 2.7.2.3 GO:0004618 ... P18912 15299460
    41773 1phq:A (2.7) BS01 FPE 2.5.1.55 GO:0005737 ... P0A715 N/A
    41774 1phw:A (2.36) BS01 N 2.5.1.55 GO:0005737 ... P0A715 16023668 MOAD: Ki=0.5mM
    41775 1phz:A (2.2) BS01 FE 1.14.16.1 GO:0004497 ... P04176 10331871
    41776 1pi1:A (2.0) BS01 ZN ? N/A Q9H8S9 12962634
    41777 1pi3:A (1.2) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    41778 1pi3:A (1.2) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    41779 1pi3:A (1.2) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    41780 1pi4:A (1.39) BS01 SM3 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=37nM
    41781 1pi4:B (1.39) BS01 SM3 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=37nM
    41782 1pi5:A (1.49) BS01 SM2 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=17nM
    41783 1pi5:B (1.49) BS01 SM2 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=17nM
    41784 1pi5:B (1.49) BS02 SM2 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=17nM
    41785 1pi6:A (2.5) BS01 ZN ? GO:0003779 ... P46680 12807914
    41786 1pic:A (-1.00) BS01 peptide 2.7.1.137 N/A P27986 8670861
    41787 1pie:A (2.1) BS01 GLA 2.7.1.6 GO:0000287 ... Q9R7D7 12796487
    41788 1pie:A (2.1) BS02 PO4 2.7.1.6 GO:0000287 ... Q9R7D7 12796487
    41789 1pif:A (2.3) BS01 CA 3.2.1.1 GO:0003824 ... P00690 8757803
    41790 1pig:A (2.2) BS01 GLC 3.2.1.1 GO:0003824 ... P00690 8757803
    41791 1pig:A (2.2) BS02 AGL 3.2.1.1 GO:0003824 ... P00690 8757803
    41792 1pig:A (2.2) BS03 GLC 3.2.1.1 GO:0003824 ... P00690 8757803
    41793 1pig:A (2.2) BS04 AGL 3.2.1.1 GO:0003824 ... P00690 8757803
    41794 1pig:A (2.2) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 8757803
    41795 1pig:A (2.2) BS06 GLC 3.2.1.1 GO:0003824 ... P00690 8757803
    41796 1pig:A (2.2) BS07 GLC 3.2.1.1 GO:0003824 ... P00690 8757803
    41797 1pig:A (2.2) BS08 BGC 3.2.1.1 GO:0003824 ... P00690 8757803
    41798 1pig:A (2.2) BS09 HMC 3.2.1.1 GO:0003824 ... P00690 8757803
    41799 1pig:A (2.2) BS10 BGC 3.2.1.1 GO:0003824 ... P00690 8757803
    41800 1pig:A (2.2) BS11 CA 3.2.1.1 GO:0003824 ... P00690 8757803

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).