SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    418601 5w4k:2D (2.7) BS05 MG ? GO:0002181 ... P60405 28846667
    418602 5w4k:2D (2.7) BS06 MG ? GO:0002181 ... P60405 28846667
    418603 5w4k:2D (2.7) BS07 MG ? GO:0002181 ... P60405 28846667
    418604 5w4k:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 28846667
    418605 5w4k:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 28846667
    418606 5w4k:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 28846667
    418607 5w4k:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 28846667
    418608 5w4k:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 28846667
    418609 5w4k:2F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 28846667
    418610 5w4k:2F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 28846667
    418611 5w4k:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 28846667
    418612 5w4k:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 28846667
    418613 5w4k:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 28846667
    418614 5w4k:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 28846667
    418615 5w4k:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 28846667
    418616 5w4k:2N (2.7) BS01 rna ? GO:0003729 ... P60488 28846667
    418617 5w4k:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 28846667
    418618 5w4k:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 28846667
    418619 5w4k:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 28846667
    418620 5w4k:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 28846667
    418621 5w4k:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 28846667
    418622 5w4k:2Q (2.7) BS03 rna ? GO:0000049 ... P60489 28846667
    418623 5w4k:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 28846667
    418624 5w4k:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 28846667
    418625 5w4k:2Q (2.7) BS06 MG ? GO:0000049 ... P60489 28846667
    418626 5w4k:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 28846667
    418627 5w4k:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 28846667
    418628 5w4k:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 28846667
    418629 5w4k:2T (2.7) BS01 rna ? GO:0003735 ... P60490 28846667
    418630 5w4k:2T (2.7) BS02 rna ? GO:0003735 ... P60490 28846667
    418631 5w4k:2U (2.7) BS01 rna ? GO:0000027 ... P60491 28846667
    418632 5w4k:2U (2.7) BS02 MG ? GO:0000027 ... P60491 28846667
    418633 5w4k:2U (2.7) BS03 MG ? GO:0000027 ... P60491 28846667
    418634 5w4k:2V (2.7) BS01 rna ? GO:0003723 ... P60492 28846667
    418635 5w4k:2V (2.7) BS02 MG ? GO:0003723 ... P60492 28846667
    418636 5w4k:2V (2.7) BS03 MG ? GO:0003723 ... P60492 28846667
    418637 5w4k:2V (2.7) BS04 MG ? GO:0003723 ... P60492 28846667
    418638 5w4k:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 28846667
    418639 5w4k:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 28846667
    418640 5w4k:2W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 28846667
    418641 5w4k:2X (2.7) BS01 rna ? GO:0003735 ... Q5SHP0 28846667
    418642 5w4k:2X (2.7) BS02 MG ? GO:0003735 ... Q5SHP0 28846667
    418643 5w4k:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 28846667
    418644 5w4k:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 28846667
    418645 5w4k:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 28846667
    418646 5w4k:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 28846667
    418647 5w4k:2Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 28846667
    418648 5w4k:2b (2.7) BS01 rna ? GO:0003735 ... P80371 28846667
    418649 5w4k:2c (2.7) BS01 rna ? GO:0003676 ... P80372 28846667
    418650 5w4k:2d (2.7) BS01 rna ? GO:0003723 ... P80373 28846667
    418651 5w4k:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 28846667
    418652 5w4k:2d (2.7) BS03 MG ? GO:0003723 ... P80373 28846667
    418653 5w4k:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 28846667
    418654 5w4k:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 28846667
    418655 5w4k:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 28846667
    418656 5w4k:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 28846667
    418657 5w4k:2g (2.7) BS01 rna ? GO:0000049 ... P17291 28846667
    418658 5w4k:2g (2.7) BS02 rna ? GO:0000049 ... P17291 28846667
    418659 5w4k:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 28846667
    418660 5w4k:2i (2.7) BS01 rna ? GO:0000049 ... P80374 28846667
    418661 5w4k:2i (2.7) BS02 rna ? GO:0000049 ... P80374 28846667
    418662 5w4k:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 28846667
    418663 5w4k:2k (2.7) BS01 rna ? GO:0003735 ... P80376 28846667
    418664 5w4k:2k (2.7) BS02 MG ? GO:0003735 ... P80376 28846667
    418665 5w4k:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 28846667
    418666 5w4k:2l (2.7) BS02 rna ? GO:0000049 ... Q5SHN3 28846667
    418667 5w4k:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 28846667
    418668 5w4k:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 28846667
    418669 5w4k:2m (2.7) BS01 rna ? GO:0000049 ... P80377 28846667
    418670 5w4k:2m (2.7) BS02 rna ? GO:0000049 ... P80377 28846667
    418671 5w4k:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 28846667
    418672 5w4k:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 28846667
    418673 5w4k:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 28846667
    418674 5w4k:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 28846667
    418675 5w4k:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 28846667
    418676 5w4k:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 28846667
    418677 5w4k:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 28846667
    418678 5w4k:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 28846667
    418679 5w4k:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 28846667
    418680 5w4k:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 28846667
    418681 5w4k:2t (2.7) BS01 rna ? GO:0003723 ... P80380 28846667
    418682 5w4k:2t (2.7) BS02 MG ? GO:0003723 ... P80380 28846667
    418683 5w4l:A (2.92) BS01 peptide ? GO:0019031 ... A0A0M3KKW9 29056481
    418684 5w4l:G (2.92) BS01 peptide ? GO:0019031 ... A0A0M3KKW9 29056481
    418685 5w4r:A (3.002) BS01 9WD ? GO:0003677 ... P51449 29079472 BindingDB: Kd=33nM, IC50=46nM
    418686 5w4r:B (3.002) BS01 9WD ? GO:0003677 ... P51449 29079472 BindingDB: Kd=33nM, IC50=46nM
    418687 5w4s:A (-1.00) BS01 peptide 2.7.11.13 N/A P05696 29642029
    418688 5w4s:A (-1.00) BS02 CA 2.7.11.13 N/A P05696 29642029
    418689 5w4s:A (-1.00) BS03 CA 2.7.11.13 N/A P05696 29642029
    418690 5w4t:A (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    418691 5w4t:A (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    418692 5w4t:A (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    418693 5w4t:A (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    418694 5w4t:A (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    418695 5w4t:A (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    418696 5w4t:A (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    418697 5w4t:B (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    418698 5w4t:B (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    418699 5w4t:B (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    418700 5w4t:B (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    418701 5w4t:B (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    418702 5w4t:B (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    418703 5w4t:B (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    418704 5w4t:C (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    418705 5w4t:C (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    418706 5w4t:C (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    418707 5w4t:C (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    418708 5w4t:C (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    418709 5w4t:C (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    418710 5w4t:C (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    418711 5w4t:D (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    418712 5w4t:D (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    418713 5w4t:D (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    418714 5w4t:D (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    418715 5w4t:D (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    418716 5w4t:D (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    418717 5w4t:D (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    418718 5w4u:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 28933854
    418719 5w4u:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P04050 28933854
    418720 5w4u:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    418721 5w4u:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    418722 5w4u:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 28933854
    418723 5w4u:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 28933854
    418724 5w4u:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P08518 28933854
    418725 5w4u:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 28933854
    418726 5w4u:C (3.6) BS01 ZN ? GO:0000428 ... P16370 28933854
    418727 5w4u:I (3.6) BS01 ZN ? GO:0000428 ... P27999 28933854
    418728 5w4u:I (3.6) BS02 ZN ? GO:0000428 ... P27999 28933854
    418729 5w4u:J (3.6) BS01 ZN ? GO:0000428 ... P22139 28933854
    418730 5w4u:L (3.6) BS01 ZN ? GO:0000428 ... P40422 28933854
    418731 5w4v:A (2.65) BS01 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418732 5w4v:A (2.65) BS02 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418733 5w4v:B (2.65) BS01 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418734 5w4v:B (2.65) BS02 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418735 5w4v:C (2.65) BS01 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418736 5w4v:C (2.65) BS02 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418737 5w4v:D (2.65) BS01 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418738 5w4v:E (2.65) BS01 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418739 5w4v:F (2.65) BS01 9WA ? GO:0003677 ... P51449 29079472 BindingDB: Kd=5.0nM, IC50=89nM
    418740 5w4w:A (1.99) BS01 9WG 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 28609096 MOAD: ic50=8nM
    BindingDB: IC50=13nM
    418741 5w4w:B (1.99) BS01 9WG 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 28609096 MOAD: ic50=8nM
    BindingDB: IC50=13nM
    418742 5w4w:C (1.99) BS01 9WG 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 28609096 MOAD: ic50=8nM
    BindingDB: IC50=13nM
    418743 5w4w:D (1.99) BS01 9WG 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 28609096 MOAD: ic50=8nM
    BindingDB: IC50=13nM
    418744 5w4y:A (1.9) BS01 FMN ? GO:0000166 ... A0A3B6UEK8 N/A
    418745 5w4y:B (1.9) BS01 FMN ? GO:0000166 ... A0A3B6UEK8 N/A
    418746 5w4z:A (1.75) BS01 9WY ? GO:0000166 ... A0A3B6UEK8 N/A
    418747 5w4z:A (1.75) BS02 RBF ? GO:0000166 ... A0A3B6UEK8 N/A
    418748 5w4z:B (1.75) BS01 9WY ? GO:0000166 ... A0A3B6UEK8 N/A
    418749 5w4z:B (1.75) BS02 RBF ? GO:0000166 ... A0A3B6UEK8 N/A
    418750 5w51:A (3.404) BS01 dna 2.7.7.6 GO:0000428 ... P04050 28933854
    418751 5w51:A (3.404) BS02 dna 2.7.7.6 GO:0000428 ... P04050 28933854
    418752 5w51:A (3.404) BS03 rna 2.7.7.6 GO:0000428 ... P04050 28933854
    418753 5w51:A (3.404) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    418754 5w51:A (3.404) BS05 MG 2.7.7.6 GO:0000428 ... P04050 28933854
    418755 5w51:B (3.404) BS01 dna 2.7.7.6 GO:0000428 ... P08518 28933854
    418756 5w51:B (3.404) BS02 rna 2.7.7.6 GO:0000428 ... P08518 28933854
    418757 5w51:B (3.404) BS03 2KH 2.7.7.6 GO:0000428 ... P08518 28933854
    418758 5w51:B (3.404) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 28933854
    418759 5w51:C (3.404) BS01 ZN ? GO:0000428 ... P16370 28933854
    418760 5w51:I (3.404) BS01 ZN ? GO:0000428 ... P27999 28933854
    418761 5w51:I (3.404) BS02 ZN ? GO:0000428 ... P27999 28933854
    418762 5w51:J (3.404) BS01 ZN ? GO:0000428 ... P22139 28933854
    418763 5w51:L (3.404) BS01 ZN ? GO:0000428 ... P40422 28933854
    418764 5w55:A (1.354) BS01 X30 ? N/A O60885 N/A
    418765 5w56:A (2.03) BS01 NA ? GO:0007155 ... A1B2F3 28887302
    418766 5w56:B (2.03) BS01 NA ? GO:0007155 ... A1B2F3 28887302
    418767 5w57:A (2.3) BS01 ZN ? GO:0007155 ... A1B2F3 28887302
    418768 5w57:B (2.3) BS01 ZN ? GO:0007155 ... A1B2F3 28887302
    418769 5w58:A (2.267) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 29326169
    418770 5w58:A (2.267) BS02 FF8 1.14.99.1 GO:0001516 ... Q05769 29326169 MOAD: ic50=39nM
    418771 5w5c:A (1.85) BS01 peptide ? GO:0016020 ... P63045 28813412
    418772 5w5c:B (1.85) BS01 peptide ? GO:0005484 ... P32851 28813412
    418773 5w5c:F (1.85) BS01 peptide ? GO:0016020 ... P21707 28813412
    418774 5w5h:A (2.79) BS01 rna ? GO:0003723 ... P09914 N/A
    418775 5w5h:C (2.79) BS01 rna ? GO:0003723 ... P09914 N/A
    418776 5w5i:A (2.65) BS01 rna ? GO:0003723 ... P09914 N/A
    418777 5w5i:C (2.65) BS01 rna ? GO:0003723 ... P09914 N/A
    418778 5w5j:A (2.85) BS01 9WS 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 29057049 BindingDB: IC50=1500nM
    418779 5w5j:B (2.85) BS01 9WS 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 29057049 BindingDB: IC50=1500nM
    418780 5w5k:A (2.7) BS01 ZN ? N/A F8W4B7 30645113
    418781 5w5k:A (2.7) BS02 K70 ? N/A F8W4B7 30645113
    418782 5w5k:B (2.7) BS01 K70 ? N/A F8W4B7 30645113
    418783 5w5k:B (2.7) BS02 ZN ? N/A F8W4B7 30645113
    418784 5w5k:B (2.7) BS03 K70 ? N/A F8W4B7 30645113
    418785 5w5k:C (2.7) BS01 ZN ? N/A F8W4B7 30645113
    418786 5w5k:C (2.7) BS02 K70 ? N/A F8W4B7 30645113
    418787 5w5l:A (1.9) BS01 BMA ? N/A P0DOX5 31548527
    418788 5w5l:A (1.9) BS02 GAL ? N/A P0DOX5 31548527
    418789 5w5l:B (1.9) BS01 BMA ? N/A P0DOX5 31548527
    418790 5w5l:B (1.9) BS02 GAL ? N/A P0DOX5 31548527
    418791 5w5m:A (1.9) BS01 BMA ? N/A P01861 31548527
    418792 5w5m:A (1.9) BS02 GAL ? N/A P01861 31548527
    418793 5w5m:B (1.9) BS01 BMA ? N/A P01861 31548527
    418794 5w5m:B (1.9) BS02 GAL ? N/A P01861 31548527
    418795 5w5n:A (1.85) BS01 BMA ? N/A P01861 31548527
    418796 5w5n:A (1.85) BS02 GAL ? N/A P01861 31548527
    418797 5w5n:B (1.85) BS01 BMA ? N/A P01861 31548527
    418798 5w5n:B (1.85) BS02 GAL ? N/A P01861 31548527
    418799 5w5o:A (2.89) BS01 9XA 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 29057049 BindingDB: IC50=8.0nM
    418800 5w5o:B (2.89) BS01 9XA 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 29057049 BindingDB: IC50=8.0nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).