SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    419801 5we1:A (3.202) BS01 peptide ? N/A O13852 29149597
    419802 5we1:C (3.202) BS01 peptide ? N/A O13852 29149597
    419803 5we1:D (3.202) BS01 ZN ? N/A O14246 29149597
    419804 5we2:B (2.5) BS01 ZN ? N/A O14246 29149597
    419805 5we2:C (2.5) BS01 peptide ? GO:0000723 ... O13852 29149597
    419806 5we2:C (2.5) BS02 peptide ? GO:0000723 ... O13852 29149597
    419807 5we4:0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 29733411
    419808 5we4:1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 29733411
    419809 5we4:1 (3.1) BS02 rna ? GO:0000027 ... P0A7N9 29733411
    419810 5we4:2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 29733411
    419811 5we4:3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 29733411
    419812 5we4:4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 29733411
    419813 5we4:5 (3.1) BS01 rna ? GO:0003735 ... P0A7J3 29733411
    419814 5we4:6 (3.1) BS01 rna ? GO:0002181 ... P0A7M9 29733411
    419815 5we4:C (3.1) BS01 rna ? GO:0000027 ... P60422 29733411
    419816 5we4:D (3.1) BS01 rna ? GO:0000027 ... P60438 29733411
    419817 5we4:D (3.1) BS02 MG ? GO:0000027 ... P60438 29733411
    419818 5we4:E (3.1) BS01 rna ? GO:0001070 ... P60723 29733411
    419819 5we4:F (3.1) BS01 rna ? GO:0000027 ... P62399 29733411
    419820 5we4:F (3.1) BS02 rna ? GO:0000027 ... P62399 29733411
    419821 5we4:F (3.1) BS03 rna ? GO:0000027 ... P62399 29733411
    419822 5we4:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 29733411
    419823 5we4:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    419824 5we4:I (3.1) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    419825 5we4:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 29733411
    419826 5we4:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    419827 5we4:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    419828 5we4:L (3.1) BS01 rna ? GO:0002181 ... P02413 29733411
    419829 5we4:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    419830 5we4:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    419831 5we4:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 29733411
    419832 5we4:O (3.1) BS01 rna ? GO:0002181 ... P0C018 29733411
    419833 5we4:O (3.1) BS02 rna ? GO:0002181 ... P0C018 29733411
    419834 5we4:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    419835 5we4:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    419836 5we4:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    419837 5we4:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 29733411
    419838 5we4:S (3.1) BS01 rna ? GO:0002181 ... P61175 29733411
    419839 5we4:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    419840 5we4:U (3.1) BS01 rna ? GO:0000027 ... P60624 29733411
    419841 5we4:V (3.1) BS01 rna ? GO:0000027 ... P68919 29733411
    419842 5we4:V (3.1) BS02 rna ? GO:0000027 ... P68919 29733411
    419843 5we4:W (3.1) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    419844 5we4:W (3.1) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    419845 5we4:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    419846 5we4:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    419847 5we4:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 29733411
    419848 5we4:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 29733411
    419849 5we4:b (3.1) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    419850 5we4:c (3.1) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    419851 5we4:d (3.1) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    419852 5we4:e (3.1) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    419853 5we4:e (3.1) BS02 rna ? GO:0000028 ... P0A7W1 29733411
    419854 5we4:f (3.1) BS01 rna ? GO:0003735 ... P02358 29733411
    419855 5we4:g (3.1) BS01 rna ? GO:0003723 ... P02359 29733411
    419856 5we4:g (3.1) BS02 rna ? GO:0003723 ... P02359 29733411
    419857 5we4:h (3.1) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    419858 5we4:i (3.1) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    419859 5we4:i (3.1) BS02 rna ? GO:0000049 ... P0A7X3 29733411
    419860 5we4:j (3.1) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    419861 5we4:k (3.1) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    419862 5we4:l (3.1) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    419863 5we4:m (3.1) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    419864 5we4:m (3.1) BS02 rna ? GO:0000049 ... P0A7S9 29733411
    419865 5we4:n (3.1) BS01 rna ? GO:0003735 ... P0AG59 29733411
    419866 5we4:o (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    419867 5we4:o (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    419868 5we4:p (3.1) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    419869 5we4:q (3.1) BS01 rna ? GO:0000028 ... P0AG63 29733411
    419870 5we4:r (3.1) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    419871 5we4:s (3.1) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    419872 5we4:t (3.1) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    419873 5we4:u (3.1) BS01 rna ? GO:0000028 ... P68679 29733411
    419874 5we4:z (3.1) BS01 rna ? GO:0003723 ... P0CE48 29733411
    419875 5we4:z (3.1) BS02 rna ? GO:0003723 ... P0CE48 29733411
    419876 5we4:z (3.1) BS03 rna ? GO:0003723 ... P0CE48 29733411
    419877 5we4:z (3.1) BS04 PHE ? GO:0003723 ... P0CE48 29733411
    419878 5we4:z (3.1) BS05 GNP ? GO:0003723 ... P0CE48 29733411
    419879 5we4:z (3.1) BS06 MG ? GO:0003723 ... P0CE48 29733411
    419880 5we6:0 (3.4) BS01 rna ? GO:0000027 ... P0A7N4 29733411
    419881 5we6:1 (3.4) BS01 rna ? GO:0000027 ... P0A7N9 29733411
    419882 5we6:2 (3.4) BS01 rna ? GO:0002181 ... P0A7P5 29733411
    419883 5we6:3 (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 29733411
    419884 5we6:3 (3.4) BS02 MG ? GO:0002181 ... P0A7Q1 29733411
    419885 5we6:4 (3.4) BS01 rna ? GO:0002181 ... P0A7Q6 29733411
    419886 5we6:5 (3.4) BS01 rna ? GO:0003735 ... P0A7J3 29733411
    419887 5we6:6 (3.4) BS01 rna ? GO:0002181 ... P0A7M9 29733411
    419888 5we6:C (3.4) BS01 rna ? GO:0000027 ... P60422 29733411
    419889 5we6:C (3.4) BS02 rna ? GO:0000027 ... P60422 29733411
    419890 5we6:C (3.4) BS03 MG ? GO:0000027 ... P60422 29733411
    419891 5we6:D (3.4) BS01 rna ? GO:0000027 ... P60438 29733411
    419892 5we6:E (3.4) BS01 rna ? GO:0001070 ... P60723 29733411
    419893 5we6:F (3.4) BS01 rna ? GO:0000027 ... P62399 29733411
    419894 5we6:F (3.4) BS02 rna ? GO:0000027 ... P62399 29733411
    419895 5we6:F (3.4) BS03 rna ? GO:0000027 ... P62399 29733411
    419896 5we6:G (3.4) BS01 rna ? GO:0000027 ... P0AG55 29733411
    419897 5we6:H (3.4) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    419898 5we6:I (3.4) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    419899 5we6:J (3.4) BS01 rna ? GO:0002181 ... P0AA10 29733411
    419900 5we6:K (3.4) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    419901 5we6:K (3.4) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    419902 5we6:L (3.4) BS01 rna ? GO:0002181 ... P02413 29733411
    419903 5we6:M (3.4) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    419904 5we6:M (3.4) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    419905 5we6:N (3.4) BS01 rna ? GO:0000027 ... P0AG44 29733411
    419906 5we6:O (3.4) BS01 rna ? GO:0002181 ... P0C018 29733411
    419907 5we6:O (3.4) BS02 rna ? GO:0002181 ... P0C018 29733411
    419908 5we6:P (3.4) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    419909 5we6:P (3.4) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    419910 5we6:Q (3.4) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    419911 5we6:R (3.4) BS01 rna ? GO:0002181 ... P0AG48 29733411
    419912 5we6:S (3.4) BS01 rna ? GO:0002181 ... P61175 29733411
    419913 5we6:T (3.4) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    419914 5we6:U (3.4) BS01 rna ? GO:0000027 ... P60624 29733411
    419915 5we6:V (3.4) BS01 rna ? GO:0000027 ... P68919 29733411
    419916 5we6:V (3.4) BS02 rna ? GO:0000027 ... P68919 29733411
    419917 5we6:W (3.4) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    419918 5we6:W (3.4) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    419919 5we6:X (3.4) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    419920 5we6:Y (3.4) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    419921 5we6:Z (3.4) BS01 rna ? GO:0000027 ... P0AG51 29733411
    419922 5we6:Z (3.4) BS02 rna ? GO:0000027 ... P0AG51 29733411
    419923 5we6:b (3.4) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    419924 5we6:c (3.4) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    419925 5we6:d (3.4) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    419926 5we6:e (3.4) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    419927 5we6:f (3.4) BS01 rna ? GO:0003735 ... P02358 29733411
    419928 5we6:g (3.4) BS01 rna ? GO:0003723 ... P02359 29733411
    419929 5we6:g (3.4) BS02 rna ? GO:0003723 ... P02359 29733411
    419930 5we6:h (3.4) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    419931 5we6:i (3.4) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    419932 5we6:j (3.4) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    419933 5we6:k (3.4) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    419934 5we6:l (3.4) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    419935 5we6:m (3.4) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    419936 5we6:n (3.4) BS01 rna ? GO:0003735 ... P0AG59 29733411
    419937 5we6:o (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    419938 5we6:o (3.4) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    419939 5we6:p (3.4) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    419940 5we6:q (3.4) BS01 rna ? GO:0000028 ... P0AG63 29733411
    419941 5we6:r (3.4) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    419942 5we6:s (3.4) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    419943 5we6:t (3.4) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    419944 5we6:u (3.4) BS01 rna ? GO:0000028 ... P68679 29733411
    419945 5we6:z (3.4) BS01 rna ? GO:0003723 ... P0CE48 29733411
    419946 5we6:z (3.4) BS02 rna ? GO:0003723 ... P0CE48 29733411
    419947 5we6:z (3.4) BS03 rna ? GO:0003723 ... P0CE48 29733411
    419948 5we6:z (3.4) BS04 PHE ? GO:0003723 ... P0CE48 29733411
    419949 5we6:z (3.4) BS05 GTP ? GO:0003723 ... P0CE48 29733411
    419950 5we6:z (3.4) BS06 MG ? GO:0003723 ... P0CE48 29733411
    419951 5we7:A (2.12) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    419952 5we7:A (2.12) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    419953 5we7:A (2.12) BS03 G3K 3.1.-.- GO:0003723 ... C3W5S0 N/A
    419954 5we8:A (2.006) BS01 MN 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    419955 5we8:A (2.006) BS02 ANP 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    419956 5we8:A (2.006) BS03 A7Y 2.7.11.1 GO:0004672 ... Q9H4A3 28771350 BindingDB: IC50=750nM
    419957 5we8:B (2.006) BS01 MN 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    419958 5we8:B (2.006) BS02 ANP 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    419959 5we8:B (2.006) BS03 A7Y 2.7.11.1 GO:0004672 ... Q9H4A3 28771350 BindingDB: IC50=750nM
    419960 5we9:A (1.804) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419961 5we9:A (1.804) BS02 MG 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419962 5we9:A (1.804) BS03 GY7 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=0.06uM
    419963 5wea:A (3.12) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 28939659
    419964 5web:A (2.254) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419965 5web:A (2.254) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419966 5web:A (2.254) BS03 KU5 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=0.01uM
    419967 5wed:A (2.15) BS01 FAD ? GO:0000166 ... F5L3B8 28994401
    419968 5wed:B (2.15) BS01 FAD ? GO:0000166 ... F5L3B8 28994401
    419969 5wed:C (2.15) BS01 FAD ? GO:0000166 ... F5L3B8 28994401
    419970 5wed:D (2.15) BS01 FAD ? GO:0000166 ... F5L3B8 28994401
    419971 5wef:A (2.0) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419972 5wef:A (2.0) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419973 5wef:A (2.0) BS03 GY6 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=0.36uM
    419974 5weh:A (3.45) BS01 HEA 7.1.1.9 GO:0004129 ... P33517 28842531
    419975 5weh:A (3.45) BS02 HEA 7.1.1.9 GO:0004129 ... P33517 28842531
    419976 5weh:A (3.45) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 28842531
    419977 5weh:A (3.45) BS04 MG 7.1.1.9 GO:0004129 ... P33517 28842531
    419978 5weh:A (3.45) BS05 CA 7.1.1.9 GO:0004129 ... P33517 28842531
    419979 5weh:B (3.45) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    419980 5weh:B (3.45) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    419981 5weh:G (3.45) BS01 HEA 7.1.1.9 GO:0004129 ... P33517 28842531
    419982 5weh:G (3.45) BS02 HEA 7.1.1.9 GO:0004129 ... P33517 28842531
    419983 5weh:G (3.45) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 28842531
    419984 5weh:G (3.45) BS04 MG 7.1.1.9 GO:0004129 ... P33517 28842531
    419985 5weh:G (3.45) BS05 CA 7.1.1.9 GO:0004129 ... P33517 28842531
    419986 5weh:H (3.45) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    419987 5weh:H (3.45) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    419988 5wei:A (2.25) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419989 5wei:A (2.25) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    419990 5wei:A (2.25) BS03 GY6 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=2uM
    419991 5wej:A (1.95) BS01 V45 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 29227928
    419992 5wej:B (1.95) BS01 V45 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 29227928
    419993 5wek:A (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    419994 5wek:B (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    419995 5wek:C (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    419996 5wek:D (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    419997 5wel:A (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    419998 5wel:A (4.4) BS02 AJP ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    419999 5wel:B (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760
    420000 5wel:C (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491
    28737760

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).