SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    420201 5wfk:F (3.4) BS02 rna ? GO:0000027 ... P62399 29733411
    420202 5wfk:F (3.4) BS03 rna ? GO:0000027 ... P62399 29733411
    420203 5wfk:G (3.4) BS01 rna ? GO:0000027 ... P0AG55 29733411
    420204 5wfk:H (3.4) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    420205 5wfk:I (3.4) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    420206 5wfk:I (3.4) BS02 rna ? GO:0000027 ... P0A7J7 29733411
    420207 5wfk:J (3.4) BS01 rna ? GO:0002181 ... P0AA10 29733411
    420208 5wfk:K (3.4) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    420209 5wfk:K (3.4) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    420210 5wfk:L (3.4) BS01 rna ? GO:0002181 ... P02413 29733411
    420211 5wfk:M (3.4) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    420212 5wfk:M (3.4) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    420213 5wfk:N (3.4) BS01 rna ? GO:0000027 ... P0AG44 29733411
    420214 5wfk:O (3.4) BS01 rna ? GO:0002181 ... P0C018 29733411
    420215 5wfk:O (3.4) BS02 rna ? GO:0002181 ... P0C018 29733411
    420216 5wfk:P (3.4) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    420217 5wfk:P (3.4) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    420218 5wfk:Q (3.4) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    420219 5wfk:R (3.4) BS01 rna ? GO:0002181 ... P0AG48 29733411
    420220 5wfk:S (3.4) BS01 rna ? GO:0002181 ... P61175 29733411
    420221 5wfk:T (3.4) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    420222 5wfk:U (3.4) BS01 rna ? GO:0000027 ... P60624 29733411
    420223 5wfk:V (3.4) BS01 rna ? GO:0000027 ... P68919 29733411
    420224 5wfk:V (3.4) BS02 rna ? GO:0000027 ... P68919 29733411
    420225 5wfk:W (3.4) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    420226 5wfk:W (3.4) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    420227 5wfk:X (3.4) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    420228 5wfk:Y (3.4) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    420229 5wfk:Z (3.4) BS01 rna ? GO:0000027 ... P0AG51 29733411
    420230 5wfk:Z (3.4) BS02 rna ? GO:0000027 ... P0AG51 29733411
    420231 5wfk:b (3.4) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    420232 5wfk:c (3.4) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    420233 5wfk:d (3.4) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    420234 5wfk:e (3.4) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    420235 5wfk:f (3.4) BS01 rna ? GO:0003735 ... P02358 29733411
    420236 5wfk:g (3.4) BS01 rna ? GO:0003723 ... P02359 29733411
    420237 5wfk:g (3.4) BS02 rna ? GO:0003723 ... P02359 29733411
    420238 5wfk:h (3.4) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    420239 5wfk:i (3.4) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    420240 5wfk:i (3.4) BS02 rna ? GO:0000049 ... P0A7X3 29733411
    420241 5wfk:j (3.4) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    420242 5wfk:k (3.4) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    420243 5wfk:l (3.4) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    420244 5wfk:m (3.4) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    420245 5wfk:m (3.4) BS02 rna ? GO:0000049 ... P0A7S9 29733411
    420246 5wfk:n (3.4) BS01 rna ? GO:0003735 ... P0AG59 29733411
    420247 5wfk:o (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    420248 5wfk:o (3.4) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    420249 5wfk:p (3.4) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    420250 5wfk:q (3.4) BS01 rna ? GO:0000028 ... P0AG63 29733411
    420251 5wfk:r (3.4) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    420252 5wfk:s (3.4) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    420253 5wfk:t (3.4) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    420254 5wfk:u (3.4) BS01 rna ? GO:0000028 ... P68679 29733411
    420255 5wfk:z (3.4) BS01 rna ? GO:0003723 ... P0CE48 29733411
    420256 5wfk:z (3.4) BS02 rna ? GO:0003723 ... P0CE48 29733411
    420257 5wfk:z (3.4) BS03 PHE ? GO:0003723 ... P0CE48 29733411
    420258 5wfk:z (3.4) BS04 GTP ? GO:0003723 ... P0CE48 29733411
    420259 5wfm:A (2.251) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420260 5wfm:A (2.251) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420261 5wfm:A (2.251) BS03 KU5 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=0.3uM
    420262 5wfn:A (3.0) BS01 ANP 3.6.4.- GO:0000281 ... P10987 N/A
    420263 5wfn:B (3.0) BS01 ANP 3.6.4.- GO:0000281 ... P10987 N/A
    420264 5wfo:N (1.99) BS01 5UU ? GO:0005085 ... Q07889 29444450
    420265 5wfo:Q (1.99) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    420266 5wfo:Q (1.99) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    420267 5wfp:N (2.08) BS01 5UX ? GO:0005085 ... Q07889 29444450
    420268 5wfp:Q (2.08) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    420269 5wfp:Q (2.08) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    420270 5wfq:N (2.26) BS01 5UV ? GO:0005085 ... Q07889 29444450
    420271 5wfq:Q (2.26) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    420272 5wfq:Q (2.26) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    420273 5wfr:N (2.46) BS01 5UW ? GO:0005085 ... Q07889 29444450
    420274 5wfr:Q (2.46) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    420275 5wfr:Q (2.46) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    420276 5wfs:0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 29733411
    420277 5wfs:1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 29733411
    420278 5wfs:2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 29733411
    420279 5wfs:3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 29733411
    420280 5wfs:4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 29733411
    420281 5wfs:5 (3.0) BS01 rna ? GO:0003735 ... P0A7J3 29733411
    420282 5wfs:6 (3.0) BS01 rna ? GO:0002181 ... P0A7M9 29733411
    420283 5wfs:C (3.0) BS01 rna ? GO:0000027 ... P60422 29733411
    420284 5wfs:C (3.0) BS02 MG ? GO:0000027 ... P60422 29733411
    420285 5wfs:D (3.0) BS01 rna ? GO:0000027 ... P60438 29733411
    420286 5wfs:E (3.0) BS01 rna ? GO:0001070 ... P60723 29733411
    420287 5wfs:F (3.0) BS01 rna ? GO:0000027 ... P62399 29733411
    420288 5wfs:F (3.0) BS02 rna ? GO:0000027 ... P62399 29733411
    420289 5wfs:F (3.0) BS03 rna ? GO:0000027 ... P62399 29733411
    420290 5wfs:G (3.0) BS01 rna ? GO:0000027 ... P0AG55 29733411
    420291 5wfs:H (3.0) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    420292 5wfs:I (3.0) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    420293 5wfs:J (3.0) BS01 rna ? GO:0002181 ... P0AA10 29733411
    420294 5wfs:K (3.0) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    420295 5wfs:K (3.0) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    420296 5wfs:L (3.0) BS01 rna ? GO:0002181 ... P02413 29733411
    420297 5wfs:M (3.0) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    420298 5wfs:M (3.0) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    420299 5wfs:N (3.0) BS01 rna ? GO:0000027 ... P0AG44 29733411
    420300 5wfs:O (3.0) BS01 rna ? GO:0002181 ... P0C018 29733411
    420301 5wfs:O (3.0) BS02 rna ? GO:0002181 ... P0C018 29733411
    420302 5wfs:P (3.0) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    420303 5wfs:P (3.0) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    420304 5wfs:Q (3.0) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    420305 5wfs:Q (3.0) BS02 MG ? GO:0000027 ... P0A7L3 29733411
    420306 5wfs:R (3.0) BS01 rna ? GO:0002181 ... P0AG48 29733411
    420307 5wfs:S (3.0) BS01 rna ? GO:0002181 ... P61175 29733411
    420308 5wfs:T (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    420309 5wfs:U (3.0) BS01 rna ? GO:0000027 ... P60624 29733411
    420310 5wfs:V (3.0) BS01 rna ? GO:0000027 ... P68919 29733411
    420311 5wfs:V (3.0) BS02 rna ? GO:0000027 ... P68919 29733411
    420312 5wfs:W (3.0) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    420313 5wfs:W (3.0) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    420314 5wfs:X (3.0) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    420315 5wfs:Y (3.0) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    420316 5wfs:Z (3.0) BS01 rna ? GO:0000027 ... P0AG51 29733411
    420317 5wfs:Z (3.0) BS02 rna ? GO:0000027 ... P0AG51 29733411
    420318 5wfs:b (3.0) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    420319 5wfs:c (3.0) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    420320 5wfs:d (3.0) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    420321 5wfs:e (3.0) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    420322 5wfs:f (3.0) BS01 rna ? GO:0003735 ... P02358 29733411
    420323 5wfs:g (3.0) BS01 rna ? GO:0003723 ... P02359 29733411
    420324 5wfs:g (3.0) BS02 rna ? GO:0003723 ... P02359 29733411
    420325 5wfs:h (3.0) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    420326 5wfs:i (3.0) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    420327 5wfs:i (3.0) BS02 rna ? GO:0000049 ... P0A7X3 29733411
    420328 5wfs:j (3.0) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    420329 5wfs:k (3.0) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    420330 5wfs:l (3.0) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    420331 5wfs:m (3.0) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    420332 5wfs:m (3.0) BS02 MG ? GO:0000049 ... P0A7S9 29733411
    420333 5wfs:n (3.0) BS01 rna ? GO:0003735 ... P0AG59 29733411
    420334 5wfs:o (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    420335 5wfs:o (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    420336 5wfs:p (3.0) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    420337 5wfs:q (3.0) BS01 rna ? GO:0000028 ... P0AG63 29733411
    420338 5wfs:r (3.0) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    420339 5wfs:s (3.0) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    420340 5wfs:t (3.0) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    420341 5wfs:u (3.0) BS01 rna ? GO:0000028 ... P68679 29733411
    420342 5wfs:z (3.0) BS01 rna ? GO:0003723 ... P0CE48 29733411
    420343 5wfs:z (3.0) BS02 rna ? GO:0003723 ... P0CE48 29733411
    420344 5wfs:z (3.0) BS03 rna ? GO:0003723 ... P0CE48 29733411
    420345 5wfs:z (3.0) BS04 PHE ? GO:0003723 ... P0CE48 29733411
    420346 5wfs:z (3.0) BS05 GTP ? GO:0003723 ... P0CE48 29733411
    420347 5wfs:z (3.0) BS06 MG ? GO:0003723 ... P0CE48 29733411
    420348 5wfv:A (1.91) BS01 peptide ? N/A Q14145 31851823
    420349 5wfw:A (2.292) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420350 5wfw:A (2.292) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420351 5wfw:A (2.292) BS03 GYA 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=0.8uM
    420352 5wfz:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420353 5wfz:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420354 5wfz:A (2.35) BS03 KU0 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki<0.01uM
    420355 5wg1:A (2.021) BS01 peptide ? N/A Q14145 31851823
    420356 5wg3:A (2.896) BS01 AFM 2.7.11.15 GO:0001664 ... P25098 29070696
    420357 5wg3:A (2.896) BS02 MG 2.7.11.15 GO:0001664 ... P25098 29070696
    420358 5wg4:A (2.31) BS01 AFV 2.7.11.15 GO:0001664 ... P25098 29070696
    420359 5wg5:A (3.1) BS01 ZSO 2.7.11.15 GO:0001664 ... P25098 29070696
    420360 5wg5:A (3.1) BS02 MG 2.7.11.15 GO:0001664 ... P25098 29070696
    420361 5wg6:A (3.901) BS01 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420362 5wg6:A (3.901) BS02 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420363 5wg6:A (3.901) BS03 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420364 5wg6:A (3.901) BS04 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420365 5wg6:A (3.901) BS05 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420366 5wg6:A (3.901) BS06 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420367 5wg6:A (3.901) BS07 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420368 5wg6:A (3.901) BS08 A9G 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420369 5wg6:C (3.901) BS01 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420370 5wg6:C (3.901) BS02 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420371 5wg6:C (3.901) BS03 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420372 5wg6:C (3.901) BS04 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420373 5wg6:C (3.901) BS05 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420374 5wg6:C (3.901) BS06 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420375 5wg6:C (3.901) BS07 ZN 2.1.1.356
    2.1.1.43
    GO:0000082 ... Q15022
    Q15910
    29904056
    420376 5wg7:A (1.45) BS01 AUD 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29266943 BindingDB: Ki=>20000nM
    420377 5wg7:A (1.45) BS02 AUD 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29266943 BindingDB: Ki=>20000nM
    420378 5wg7:A (1.45) BS03 AUD 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29266943 BindingDB: Ki=>20000nM
    420379 5wg7:A (1.45) BS04 AUD 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29266943 BindingDB: Ki=>20000nM
    420380 5wg7:A (1.45) BS05 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29266943
    420381 5wg8:A (1.65) BS01 MN 3.1.3.16 GO:0016787 ... P53041 30679389
    420382 5wg8:A (1.65) BS02 MN 3.1.3.16 GO:0016787 ... P53041 30679389
    420383 5wg8:A (1.65) BS03 LB1 3.1.3.16 GO:0016787 ... P53041 30679389
    420384 5wg9:A (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420385 5wg9:A (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    420386 5wg9:A (2.3) BS03 KU4 3.1.-.- GO:0003723 ... C3W5S0 29215062 MOAD: Ki=2.6uM
    420387 5wgb:A (2.75) BS01 PLP 2.8.1.7 GO:0030170 ... Q9Y697 29097656
    420388 5wgb:B (2.75) BS01 8Q1 ? GO:0005515 ... Q9HD34 29097656
    420389 5wgc:A (2.15) BS01 AFY 2.3.1.- GO:0016746 ... Q54816 29620883
    420390 5wgc:B (2.15) BS01 AFY 2.3.1.- GO:0016746 ... Q54816 29620883
    420391 5wgd:A (1.8) BS01 peptide ? N/A P03372 29725689
    420392 5wgd:A (1.8) BS02 EST ? N/A P03372 29725689 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    420393 5wgd:B (1.8) BS01 peptide ? N/A P03372 29725689
    420394 5wgd:B (1.8) BS02 EST ? N/A P03372 29725689 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    420395 5wgg:A (2.036) BS01 peptide ? GO:0003824 ... A3DDW1 28704043
    420396 5wgg:A (2.036) BS02 SF4 ? GO:0003824 ... A3DDW1 28704043
    420397 5wgg:A (2.036) BS03 SF4 ? GO:0003824 ... A3DDW1 28704043
    420398 5wgg:A (2.036) BS04 SF4 ? GO:0003824 ... A3DDW1 28704043
    420399 5wgg:A (2.036) BS05 SAM ? GO:0003824 ... A3DDW1 28704043
    420400 5wgi:A (1.05) BS01 ZN ? N/A F8W4B7 29203661

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).