SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    421601 5wnq:L (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 29459784
    421602 5wnq:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 29459784
    421603 5wnq:M (3.5) BS01 rna ? GO:0000049 ... P80377 29459784
    421604 5wnq:N (3.5) BS01 rna ? GO:0003735 ... P0DOY6 29459784
    421605 5wnq:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    421606 5wnq:O (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 29459784
    421607 5wnq:P (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 29459784
    421608 5wnq:Q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 29459784
    421609 5wnq:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    421610 5wnq:R (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 29459784
    421611 5wnq:S (3.5) BS01 rna ? GO:0003723 ... Q5SHP2 29459784
    421612 5wnq:T (3.5) BS01 rna ? GO:0003723 ... P80380 29459784
    421613 5wnr:B (3.5) BS01 rna ? GO:0003735 ... P80371 29459784
    421614 5wnr:B (3.5) BS02 MG ? GO:0003735 ... P80371 29459784
    421615 5wnr:B (3.5) BS03 MG ? GO:0003735 ... P80371 29459784
    421616 5wnr:C (3.5) BS01 rna ? GO:0003676 ... P80372 29459784
    421617 5wnr:C (3.5) BS02 MG ? GO:0003676 ... P80372 29459784
    421618 5wnr:C (3.5) BS03 MG ? GO:0003676 ... P80372 29459784
    421619 5wnr:C (3.5) BS04 MG ? GO:0003676 ... P80372 29459784
    421620 5wnr:D (3.5) BS01 rna ? GO:0003723 ... P80373 29459784
    421621 5wnr:D (3.5) BS02 MG ? GO:0003723 ... P80373 29459784
    421622 5wnr:E (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 29459784
    421623 5wnr:F (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 29459784
    421624 5wnr:G (3.5) BS01 rna ? GO:0000049 ... P17291 29459784
    421625 5wnr:H (3.5) BS01 rna ? GO:0003735 ... P0DOY9 29459784
    421626 5wnr:I (3.5) BS01 rna ? GO:0000049 ... P80374 29459784
    421627 5wnr:J (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 29459784
    421628 5wnr:K (3.5) BS01 rna ? GO:0003735 ... P80376 29459784
    421629 5wnr:L (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 29459784
    421630 5wnr:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 29459784
    421631 5wnr:M (3.5) BS01 rna ? GO:0000049 ... P80377 29459784
    421632 5wnr:N (3.5) BS01 rna ? GO:0003735 ... P0DOY6 29459784
    421633 5wnr:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    421634 5wnr:O (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 29459784
    421635 5wnr:P (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 29459784
    421636 5wnr:Q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 29459784
    421637 5wnr:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    421638 5wnr:R (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 29459784
    421639 5wnr:S (3.5) BS01 rna ? GO:0003723 ... Q5SHP2 29459784
    421640 5wnr:T (3.5) BS01 rna ? GO:0003723 ... P80380 29459784
    421641 5wns:B (3.5) BS01 rna ? GO:0003735 ... P80371 29459784
    421642 5wns:B (3.5) BS02 MG ? GO:0003735 ... P80371 29459784
    421643 5wns:B (3.5) BS03 MG ? GO:0003735 ... P80371 29459784
    421644 5wns:C (3.5) BS01 rna ? GO:0003676 ... P80372 29459784
    421645 5wns:C (3.5) BS02 MG ? GO:0003676 ... P80372 29459784
    421646 5wns:C (3.5) BS03 MG ? GO:0003676 ... P80372 29459784
    421647 5wns:C (3.5) BS04 MG ? GO:0003676 ... P80372 29459784
    421648 5wns:D (3.5) BS01 rna ? GO:0003723 ... P80373 29459784
    421649 5wns:D (3.5) BS02 MG ? GO:0003723 ... P80373 29459784
    421650 5wns:E (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 29459784
    421651 5wns:F (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 29459784
    421652 5wns:G (3.5) BS01 rna ? GO:0000049 ... P17291 29459784
    421653 5wns:H (3.5) BS01 rna ? GO:0003735 ... P0DOY9 29459784
    421654 5wns:I (3.5) BS01 rna ? GO:0000049 ... P80374 29459784
    421655 5wns:J (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 29459784
    421656 5wns:J (3.5) BS02 MG ? GO:0000049 ... Q5SHN7 29459784
    421657 5wns:K (3.5) BS01 rna ? GO:0003735 ... P80376 29459784
    421658 5wns:L (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 29459784
    421659 5wns:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 29459784
    421660 5wns:M (3.5) BS01 rna ? GO:0000049 ... P80377 29459784
    421661 5wns:N (3.5) BS01 rna ? GO:0003735 ... P0DOY6 29459784
    421662 5wns:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    421663 5wns:O (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 29459784
    421664 5wns:P (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 29459784
    421665 5wns:Q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 29459784
    421666 5wns:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    421667 5wns:R (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 29459784
    421668 5wns:S (3.5) BS01 rna ? GO:0003723 ... Q5SHP2 29459784
    421669 5wns:T (3.5) BS01 rna ? GO:0003723 ... P80380 29459784
    421670 5wnt:B (3.3) BS01 rna ? GO:0003735 ... P80371 29459784
    421671 5wnt:C (3.3) BS01 rna ? GO:0003676 ... P80372 29459784
    421672 5wnt:D (3.3) BS01 rna ? GO:0003723 ... P80373 29459784
    421673 5wnt:D (3.3) BS02 MG ? GO:0003723 ... P80373 29459784
    421674 5wnt:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 29459784
    421675 5wnt:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 29459784
    421676 5wnt:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    421677 5wnt:G (3.3) BS01 rna ? GO:0000049 ... P17291 29459784
    421678 5wnt:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 29459784
    421679 5wnt:I (3.3) BS01 rna ? GO:0000049 ... P80374 29459784
    421680 5wnt:J (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 29459784
    421681 5wnt:K (3.3) BS01 rna ? GO:0003735 ... P80376 29459784
    421682 5wnt:L (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 29459784
    421683 5wnt:M (3.3) BS01 rna ? GO:0000049 ... P80377 29459784
    421684 5wnt:M (3.3) BS02 MG ? GO:0000049 ... P80377 29459784
    421685 5wnt:N (3.3) BS01 rna ? GO:0003735 ... P0DOY6 29459784
    421686 5wnt:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    421687 5wnt:O (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 29459784
    421688 5wnt:P (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 29459784
    421689 5wnt:Q (3.3) BS01 rna ? GO:0003735 ... P0DOY7 29459784
    421690 5wnt:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    421691 5wnt:R (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 29459784
    421692 5wnt:S (3.3) BS01 rna ? GO:0003723 ... Q5SHP2 29459784
    421693 5wnt:S (3.3) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    421694 5wnt:T (3.3) BS01 rna ? GO:0003723 ... P80380 29459784
    421695 5wnt:T (3.3) BS02 MG ? GO:0003723 ... P80380 29459784
    421696 5wnu:B (3.4) BS01 rna ? GO:0003735 ... P80371 29459784
    421697 5wnu:C (3.4) BS01 rna ? GO:0003676 ... P80372 29459784
    421698 5wnu:D (3.4) BS01 rna ? GO:0003723 ... P80373 29459784
    421699 5wnu:D (3.4) BS02 ZN ? GO:0003723 ... P80373 29459784
    421700 5wnu:D (3.4) BS03 MG ? GO:0003723 ... P80373 29459784
    421701 5wnu:E (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 29459784
    421702 5wnu:F (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 29459784
    421703 5wnu:F (3.4) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    421704 5wnu:G (3.4) BS01 rna ? GO:0000049 ... P17291 29459784
    421705 5wnu:H (3.4) BS01 rna ? GO:0003735 ... P0DOY9 29459784
    421706 5wnu:I (3.4) BS01 rna ? GO:0000049 ... P80374 29459784
    421707 5wnu:J (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 29459784
    421708 5wnu:K (3.4) BS01 rna ? GO:0003735 ... P80376 29459784
    421709 5wnu:L (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 29459784
    421710 5wnu:M (3.4) BS01 rna ? GO:0000049 ... P80377 29459784
    421711 5wnu:N (3.4) BS01 rna ? GO:0003735 ... P0DOY6 29459784
    421712 5wnu:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    421713 5wnu:O (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 29459784
    421714 5wnu:P (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 29459784
    421715 5wnu:Q (3.4) BS01 rna ? GO:0003735 ... P0DOY7 29459784
    421716 5wnu:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    421717 5wnu:R (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 29459784
    421718 5wnu:S (3.4) BS01 rna ? GO:0003723 ... Q5SHP2 29459784
    421719 5wnu:S (3.4) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    421720 5wnu:T (3.4) BS01 rna ? GO:0003723 ... P80380 29459784
    421721 5wnu:T (3.4) BS02 MG ? GO:0003723 ... P80380 29459784
    421722 5wnv:B (3.3) BS01 rna ? GO:0003735 ... P80371 29459784
    421723 5wnv:C (3.3) BS01 rna ? GO:0003676 ... P80372 29459784
    421724 5wnv:D (3.3) BS01 rna ? GO:0003723 ... P80373 29459784
    421725 5wnv:D (3.3) BS02 ZN ? GO:0003723 ... P80373 29459784
    421726 5wnv:D (3.3) BS03 MG ? GO:0003723 ... P80373 29459784
    421727 5wnv:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 29459784
    421728 5wnv:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 29459784
    421729 5wnv:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    421730 5wnv:G (3.3) BS01 rna ? GO:0000049 ... P17291 29459784
    421731 5wnv:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 29459784
    421732 5wnv:I (3.3) BS01 rna ? GO:0000049 ... P80374 29459784
    421733 5wnv:J (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 29459784
    421734 5wnv:K (3.3) BS01 rna ? GO:0003735 ... P80376 29459784
    421735 5wnv:L (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 29459784
    421736 5wnv:M (3.3) BS01 rna ? GO:0000049 ... P80377 29459784
    421737 5wnv:M (3.3) BS02 MG ? GO:0000049 ... P80377 29459784
    421738 5wnv:N (3.3) BS01 rna ? GO:0003735 ... P0DOY6 29459784
    421739 5wnv:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    421740 5wnv:O (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 29459784
    421741 5wnv:P (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 29459784
    421742 5wnv:Q (3.3) BS01 rna ? GO:0003735 ... P0DOY7 29459784
    421743 5wnv:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    421744 5wnv:R (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 29459784
    421745 5wnv:S (3.3) BS01 rna ? GO:0003723 ... Q5SHP2 29459784
    421746 5wnv:S (3.3) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    421747 5wnv:T (3.3) BS01 rna ? GO:0003723 ... P80380 29459784
    421748 5wnv:T (3.3) BS02 MG ? GO:0003723 ... P80380 29459784
    421749 5wnw:B (1.79) BS01 ZN ? GO:0042597 ... P77754 27239796
    421750 5wnx:A (2.55) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421751 5wnx:A (2.55) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421752 5wnx:A (2.55) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421753 5wnx:A (2.55) BS04 SGT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421754 5wnx:A (2.55) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421755 5wnx:A (2.55) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421756 5wny:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421757 5wny:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421758 5wny:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421759 5wny:A (2.1) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421760 5wny:A (2.1) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421761 5wny:A (2.1) BS06 B7P 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421762 5wnz:A (2.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421763 5wnz:A (2.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421764 5wnz:A (2.2) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421765 5wnz:A (2.2) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421766 5wnz:A (2.2) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421767 5wnz:A (2.2) BS06 B7J 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421768 5wo0:A (1.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421769 5wo0:A (1.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421770 5wo0:A (1.6) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421771 5wo0:A (1.6) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421772 5wo0:A (1.6) BS05 B7A 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421773 5wo0:A (1.6) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    421774 5wo1:A (1.87) BS01 GLU ? GO:0042597 ... P77754 27239796
    421775 5wo1:B (1.87) BS01 ZN ? GO:0042597 ... P77754 27239796
    421776 5wo1:B (1.87) BS02 ZN ? GO:0042597 ... P77754 27239796
    421777 5wo2:B (1.769) BS01 ZN ? GO:0042597 ... P77754 27239796
    421778 5wo3:B (1.87) BS01 ZN ? GO:0042597 ... P77754 27239796
    421779 5wo4:A (1.84) BS01 B7V 2.7.10.2 GO:0004672 ... P23458 29156136 MOAD: ic50=0.1nM
    BindingDB: IC50=0.100000nM
    421780 5wo4:B (1.84) BS01 B7V 2.7.10.2 GO:0004672 ... P23458 29156136 MOAD: ic50=0.1nM
    BindingDB: IC50=0.100000nM
    421781 5wo6:A (3.31) BS01 DTB ? GO:0005216 ... Q9R186 28878326
    421782 5wo7:A (3.246) BS01 DTB ? GO:0005216 ... Q9R186 28878326
    421783 5wo8:A (3.4) BS01 DTB ? GO:0005216 ... Q9R186 28878326
    421784 5wo9:A (3.7) BS01 DTB ? GO:0005216 ... Q9R186 28878326
    421785 5wob:A (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421786 5wob:B (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421787 5wob:B (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    421788 5wob:C (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421789 5wob:D (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421790 5wob:D (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    421791 5wob:E (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421792 5wob:E (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    421793 5wob:F (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421794 5wob:F (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    421795 5wob:G (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421796 5wob:G (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    421797 5wob:H (3.95) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 29596046
    421798 5wob:H (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    421799 5wog:A (1.54) BS01 HEM ? GO:0004601 ... P69905 29246762
    421800 5wog:B (1.54) BS01 HEM ? GO:0004601 ... P69905 29246762

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).