SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422601 5wuk:A (2.03) BS01 peptide ? N/A O75530 28111304
    422602 5wuk:A (2.03) BS02 73K ? N/A O75530 28111304 MOAD: Kd=14nM
    BindingDB: Kd=82nM, IC50=53.5nM
    422603 5wum:A (2.0) BS01 peptide ? GO:0005737 ... P52293 28104399
    422604 5wum:A (2.0) BS02 peptide ? GO:0005737 ... P52293 28104399
    422605 5wun:A (2.2) BS01 peptide ? GO:0005737 ... P52293 28104399
    422606 5wun:A (2.2) BS02 peptide ? GO:0005737 ... P52293 28104399
    422607 5wuq:C (2.8) BS01 ZN ? N/A Q45588 28319136
    422608 5wuq:D (2.8) BS01 ZN ? N/A Q45588 28319136
    422609 5wuu:A (1.724) BS01 7UU ? N/A O60885 28347667 MOAD: ic50=0.81uM
    BindingDB: IC50=810nM
    422610 5wuw:A (1.9) BS01 NAP ? GO:0000166 ... A0A192ICX3 29396495
    422611 5wv1:A (1.9) BS01 RIB 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    422612 5wv3:A (2.07) BS01 CA 1.11.1.7 GO:0004601 ... P80025 29174286
    422613 5wv3:A (2.07) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 29174286
    422614 5wv3:A (2.07) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422615 5wv3:A (2.07) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422616 5wv3:A (2.07) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422617 5wv3:A (2.07) BS06 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422618 5wv3:A (2.07) BS07 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422619 5wv3:A (2.07) BS08 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422620 5wv3:A (2.07) BS09 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422621 5wv3:A (2.07) BS10 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    422622 5wv4:A () BS01 CU ? N/A N/A N/A
    422623 5wv4:B () BS01 CU ? N/A N/A N/A
    422624 5wvd:A (3.0) BS01 7UX 2.7.11.1 GO:0004672 ... Q9BUB5 29497019
    422625 5wvd:B (3.0) BS01 7UX 2.7.11.1 GO:0004672 ... Q9BUB5 29497019
    422626 5wve:A (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422627 5wve:A (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422628 5wve:B (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422629 5wve:C (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422630 5wve:C (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422631 5wve:D (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422632 5wve:E (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422633 5wve:E (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422634 5wve:F (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422635 5wve:G (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422636 5wve:G (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422637 5wve:H (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422638 5wve:I (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422639 5wve:I (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422640 5wve:J (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422641 5wve:K (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422642 5wve:K (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422643 5wve:L (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422644 5wve:M (4.4) BS01 DTP ? GO:0000166 ... O14727 28143931
    422645 5wve:M (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    422646 5wve:N (4.4) BS01 HEM ? GO:0005515 ... P00004 28143931
    422647 5wvi:R (6.3) BS01 peptide ? GO:0000502 ... Q06103 28106073
    422648 5wvi:S (6.3) BS01 peptide ? GO:0000502 ... P40016 28106073
    422649 5wvk:R (4.2) BS01 peptide ? GO:0000502 ... Q06103 28106073
    422650 5wvo:A (1.997) BS01 peptide ? N/A P62979 29053958
    422651 5wvo:C (1.997) BS01 peptide 2.1.1.37 N/A P26358 29053958
    422652 5wvo:C (1.997) BS02 ZN 2.1.1.37 N/A P26358 29053958
    422653 5wvp:A (2.294) BS01 BMA 3.2.1.21 GO:0004553 ... A0A1P8VKA0 N/A
    422654 5wvr:A (2.2) BS01 CLR ? GO:0008289 ... Q6CUK7 28319008
    422655 5wvu:A (2.6) BS01 ZN 3.4.17.19 GO:0004180 ... Q5SLM3 28161633
    422656 5wvu:B (2.6) BS01 ZN 3.4.17.19 GO:0004180 ... Q5SLM3 28161633
    422657 5wvu:C (2.6) BS01 ZN 3.4.17.19 GO:0004180 ... Q5SLM3 28161633
    422658 5wvw:A (1.8) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422659 5wvw:A (1.8) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422660 5wvw:B (1.8) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422661 5wvw:B (1.8) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422662 5wvw:B (1.8) BS03 dna ? GO:0003677 ... Q97ZE3 28377493
    422663 5wvy:A (2.0) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422664 5wvy:A (2.0) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422665 5wvy:B (2.0) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422666 5wvy:B (2.0) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422667 5wvz:A (2.3) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422668 5wvz:A (2.3) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422669 5wvz:B (2.3) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422670 5wvz:B (2.3) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422671 5ww3:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422672 5ww3:A (2.05) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    422673 5ww3:A (2.05) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    422674 5ww3:A (2.05) BS04 FE ? GO:0003677 ... A0QXB7 28418062
    422675 5ww3:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422676 5ww3:B (2.05) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    422677 5ww3:B (2.05) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    422678 5ww3:C (2.05) BS01 FE2 ? GO:0003677 ... A0QXB7 28418062
    422679 5ww3:C (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422680 5ww3:C (2.05) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    422681 5ww3:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422682 5ww3:D (2.05) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    422683 5ww4:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422684 5ww4:A (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422685 5ww4:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422686 5ww4:B (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422687 5ww4:C (2.05) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    422688 5ww4:C (2.05) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    422689 5ww4:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422690 5ww5:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422691 5ww5:A (2.04) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    422692 5ww5:A (2.04) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    422693 5ww5:B (2.04) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    422694 5ww5:C (2.04) BS01 FE2 ? GO:0003677 ... A0QXB7 28418062
    422695 5ww5:C (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422696 5ww5:C (2.04) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    422697 5ww6:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422698 5ww6:A (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422699 5ww6:B (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422700 5ww6:C (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422701 5ww6:D (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422702 5ww6:D (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422703 5ww7:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422704 5ww7:A (2.05) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    422705 5ww7:A (2.05) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    422706 5ww7:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422707 5ww7:B (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422708 5ww7:C (2.05) BS01 FE2 ? GO:0003677 ... A0QXB7 28418062
    422709 5ww7:C (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422710 5ww7:C (2.05) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    422711 5ww7:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422712 5ww8:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422713 5ww8:A (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422714 5ww8:A (2.04) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    422715 5ww8:B (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422716 5ww8:B (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    422717 5ww8:C (2.04) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    422718 5ww8:C (2.04) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    422719 5ww8:D (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422720 5ww9:A (2.0) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    422721 5ww9:A (2.0) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    422722 5ww9:A (2.0) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    422723 5ww9:B (2.0) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422724 5ww9:C (2.0) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    422725 5ww9:D (2.0) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    422726 5ww9:D (2.0) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    422727 5wwc:A (1.9) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422728 5wwc:A (1.9) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422729 5wwc:B (1.9) BS01 dna ? GO:0003677 ... Q97ZE3 28377493
    422730 5wwc:B (1.9) BS02 dna ? GO:0003677 ... Q97ZE3 28377493
    422731 5wwc:B (1.9) BS03 dna ? GO:0003677 ... Q97ZE3 28377493
    422732 5wwd:A (1.386) BS01 2ME 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 29066356
    422733 5wwd:A (1.386) BS02 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 29066356
    422734 5wwd:A (1.386) BS03 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 29066356
    422735 5wwd:B (1.386) BS01 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 29066356
    422736 5wwd:B (1.386) BS02 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 29066356
    422737 5wwe:A (2.4) BS01 rna ? GO:0003676 ... P22626 29379020
    422738 5wwf:A (2.15) BS01 rna ? GO:0003676 ... P22626 29379020
    422739 5wwf:C (2.15) BS01 rna ? GO:0003676 ... P22626 29379020
    422740 5wwg:A (2.03) BS01 rna ? GO:0003676 ... P22626 29379020
    422741 5wwi:A (3.194) BS01 peptide ? N/A P04439 N/A
    422742 5wwj:A (2.29) BS01 peptide ? N/A P04439 N/A
    422743 5wwj:C (2.29) BS01 peptide ? N/A P04439 N/A
    422744 5wwp:A (3.0) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0005524 ... K0BWD0 28651017
    422745 5wwp:A (3.0) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0005524 ... K0BWD0 28651017
    422746 5wwp:A (3.0) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0005524 ... K0BWD0 28651017
    422747 5wwp:B (3.0) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0005524 ... K0BWD0 28651017
    422748 5wwp:B (3.0) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0005524 ... K0BWD0 28651017
    422749 5wwp:B (3.0) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0005524 ... K0BWD0 28651017
    422750 5wwr:A (3.096) BS01 rna 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422751 5wwr:A (3.096) BS02 SFG 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422752 5wwr:B (3.096) BS01 rna 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422753 5wwr:B (3.096) BS02 SFG 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422754 5wws:A (3.247) BS01 rna 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422755 5wws:A (3.247) BS02 SAM 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422756 5wws:B (3.247) BS01 rna 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422757 5wws:B (3.247) BS02 SAM 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422758 5wwt:A (3.197) BS01 rna 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422759 5wwt:B (3.197) BS01 rna 2.1.1.- GO:0000049 ... Q8TEA1 28531330
    422760 5wwu:A (2.794) BS01 peptide ? N/A P04439 30087171
    422761 5wwv:A (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422762 5wwv:A (3.2) BS02 7V3 1.4.3.3 GO:0003884 ... P00371 N/A
    422763 5wwv:B (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422764 5wwv:C (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422765 5wwv:C (3.2) BS02 7V3 1.4.3.3 GO:0003884 ... P00371 N/A
    422766 5wwv:D (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422767 5wwv:D (3.2) BS02 7V3 1.4.3.3 GO:0003884 ... P00371 N/A
    422768 5wwv:E (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422769 5wwv:F (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422770 5wwv:F (3.2) BS02 7V3 1.4.3.3 GO:0003884 ... P00371 N/A
    422771 5wwv:G (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422772 5wwv:G (3.2) BS02 7V3 1.4.3.3 GO:0003884 ... P00371 N/A
    422773 5wwv:H (3.2) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422774 5www:A (1.798) BS01 rna 2.3.2.27 GO:0003676 ... Q5U5Q3 28808060
    422775 5wwx:A (2.0) BS01 rna 2.3.2.27 GO:0003676 ... Q5U5Q3 28808060
    422776 5wx2:A (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422777 5wx2:B (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422778 5wx2:C (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422779 5wx2:D (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422780 5wx2:E (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422781 5wx2:F (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422782 5wx2:G (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422783 5wx2:H (3.0) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 N/A
    422784 5wx3:A (1.801) BS01 COA ? GO:0009058 ... A0A1W7GKH6 28411241
    422785 5wx3:B (1.801) BS01 COA ? GO:0009058 ... A0A1W7GKH6 28411241
    422786 5wx3:C (1.801) BS01 COA ? GO:0009058 ... A0A1W7GKH6 28411241
    422787 5wx3:D (1.801) BS01 COA ? GO:0009058 ... A0A1W7GKH6 28411241
    422788 5wx6:A (1.799) BS01 COA ? GO:0009058 ... A0A1X8XLG1 28411241
    422789 5wx6:B (1.799) BS01 COA ? GO:0009058 ... A0A1X8XLG1 28411241
    422790 5wx6:C (1.799) BS01 COA ? GO:0009058 ... A0A1X8XLG1 28411241
    422791 5wx6:D (1.799) BS01 COA ? GO:0009058 ... A0A1X8XLG1 28411241
    422792 5wx7:A (1.904) BS01 COA ? GO:0009058 ... A0A1X8XLG2 28411241
    422793 5wx7:B (1.904) BS01 COA ? GO:0009058 ... A0A1X8XLG2 28411241
    422794 5wx7:C (1.904) BS01 COA ? GO:0009058 ... A0A1X8XLG2 28411241
    422795 5wx7:D (1.904) BS01 COA ? GO:0009058 ... A0A1X8XLG2 28411241
    422796 5wx9:A (1.76) BS01 dna ? GO:0003677 ... Q9LSX0 32813232
    422797 5wx9:A (1.76) BS02 dna ? GO:0003677 ... Q9LSX0 32813232
    422798 5wxb:A (1.762) BS01 SAH 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A167V0D5 28122329
    422799 5wxc:A (2.295) BS01 peptide ? N/A P04439 30087171
    422800 5wxc:C (2.295) BS01 peptide ? N/A P04439 30087171

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).