SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422801 5wxd:A (3.295) BS01 peptide ? N/A P04439 30087171
    422802 5wxf:U (1.46) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 29959058
    422803 5wxg:A (1.703) BS01 peptide ? N/A Q5VWG9 28808021
    422804 5wxg:A (1.703) BS02 ZN ? N/A Q5VWG9 28808021
    422805 5wxg:A (1.703) BS03 ZN ? N/A Q5VWG9 28808021
    422806 5wxh:A (1.297) BS01 peptide ? N/A Q5VWG9 28808021
    422807 5wxh:A (1.297) BS02 ZN ? N/A Q5VWG9 28808021
    422808 5wxh:A (1.297) BS03 ZN ? N/A Q5VWG9 28808021
    422809 5wxh:C (1.297) BS01 peptide ? N/A Q5VWG9 28808021
    422810 5wxh:C (1.297) BS02 ZN ? N/A Q5VWG9 28808021
    422811 5wxh:C (1.297) BS03 ZN ? N/A Q5VWG9 28808021
    422812 5wxi:A (2.0) BS01 TRH 2.4.1.- GO:0016757 ... E6MVV9 29440735
    422813 5wxi:B (2.0) BS01 TRH 2.4.1.- GO:0016757 ... E6MVV9 29440735
    422814 5wxk:A (1.801) BS01 TYD 2.4.1.- GO:0016757 ... E6MVV9 29440735
    422815 5wxm:A (2.304) BS01 peptide ? GO:0003723 ... P32899 28244370
    422816 5wxm:V (2.304) BS01 peptide ? GO:0005634 ... P47083 28244370
    422817 5wxn:A (2.93) BS01 peptide ? GO:0000122 ... P63104 28368277
    422818 5wxn:B (2.93) BS01 peptide ? GO:0000122 ... P63104 28368277
    422819 5wxo:U (1.64) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 29959058
    422820 5wxp:U (1.75) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 29959058
    422821 5wxq:U (1.79) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 N/A
    422822 5wxr:U (1.75) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 N/A
    422823 5wxs:U (2.3) BS01 7YF 3.4.21.73 GO:0004252 ... P00749 N/A
    422824 5wxt:U (2.1) BS01 7YR 3.4.21.73 GO:0004252 ... P00749 N/A
    422825 5wxu:A (1.7) BS01 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422826 5wxu:B (1.7) BS01 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422827 5wxu:C (1.7) BS01 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422828 5wxu:D (1.7) BS01 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422829 5wxu:D (1.7) BS02 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422830 5wxu:E (1.7) BS01 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422831 5wxu:F (1.7) BS01 IAC ? GO:0045735 ... A0A162EGL7 28680092
    422832 5wxy:A (2.63) BS01 ASP ? GO:0016853 ... Q9RNB4 31101340
    422833 5wxz:A (2.8) BS01 DAS ? GO:0016853 ... Q9RNB4 31101340
    422834 5wy0:A (2.001) BS01 SAM 2.1.1.386 GO:0001510 ... Q5T8I9 29703750
    422835 5wy1:A (3.27) BS01 ZN 2.1.1.37 GO:0003677 ... P13864 28369487
    422836 5wy1:A (3.27) BS02 ZN 2.1.1.37 GO:0003677 ... P13864 28369487
    422837 5wy1:A (3.27) BS03 ZN 2.1.1.37 GO:0003677 ... P13864 28369487
    422838 5wy1:A (3.27) BS04 ZN 2.1.1.37 GO:0003677 ... P13864 28369487
    422839 5wy2:A (1.9) BS01 peptide ? GO:0035091 ... Q9Y5X3 29263922
    422840 5wy2:C (1.9) BS01 peptide ? GO:0035091 ... Q9Y5X3 29263922
    422841 5wy5:A (2.92) BS01 ZN 2.3.2.27 GO:0006281 ... Q8WV22 20864041
    422842 5wy5:A (2.92) BS02 ZN 2.3.2.27 GO:0006281 ... Q8WV22 20864041
    422843 5wy8:B (3.07) BS01 ZN 3.2.2.6 N/A Q9NZN1 29081732
    422844 5wya:A (2.65) BS01 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422845 5wya:A (2.65) BS02 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422846 5wya:B (2.65) BS01 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422847 5wya:B (2.65) BS02 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422848 5wya:C (2.65) BS01 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422849 5wya:C (2.65) BS02 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422850 5wya:D (2.65) BS01 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422851 5wya:D (2.65) BS02 7VO 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422852 5wyf:A (2.12) BS01 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422853 5wyf:A (2.12) BS02 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422854 5wyf:B (2.12) BS01 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422855 5wyf:B (2.12) BS02 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422856 5wyf:C (2.12) BS01 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422857 5wyf:C (2.12) BS02 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422858 5wyf:D (2.12) BS01 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422859 5wyf:D (2.12) BS02 ILP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    422860 5wyi:B (2.0) BS01 peptide ? GO:0006355 ... B3LNW5 N/A
    422861 5wyi:C (2.0) BS01 SLL ? GO:0006355 ... B3LNW5 N/A
    422862 5wyj:3D (8.7) BS01 rna ? GO:0000154 ... Q12460 28244370
    422863 5wyj:3D (8.7) BS02 rna ? GO:0000154 ... Q12460 28244370
    422864 5wyj:3E (8.7) BS01 rna ? GO:0000447 ... Q12499 28244370
    422865 5wyj:3F (8.7) BS01 rna ? GO:0000447 ... Q06506 28244370
    422866 5wyj:3G (8.7) BS01 rna ? GO:0000245 ... P39990 28244370
    422867 5wyj:3H (8.7) BS01 rna ? GO:0000245 ... P39990 28244370
    422868 5wyj:AA (8.7) BS01 rna N/A N/A N/A 28244370
    422869 5wyj:AG (8.7) BS01 rna N/A N/A N/A 28244370
    422870 5wyj:B1 (8.7) BS01 rna ? GO:0000462 ... Q08965 28244370
    422871 5wyj:BB (8.7) BS01 rna ? GO:0000447 ... Q12220 28244370
    422872 5wyj:BC (8.7) BS01 rna ? GO:0000447 ... Q05946 28244370
    422873 5wyj:BE (8.7) BS01 rna ? GO:0003674 ... Q06078 28244370
    422874 5wyj:BE (8.7) BS02 rna ? GO:0003674 ... Q06078 28244370
    422875 5wyj:CA (8.7) BS01 rna ? GO:0000028 ... P25368 28244370
    422876 5wyj:CB (8.7) BS01 rna ? GO:0000028 ... P53254 28244370
    422877 5wyj:E1 (8.7) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 28244370
    422878 5wyj:E2 (8.7) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 28244370
    422879 5wyj:E3 (8.7) BS01 rna ? GO:0000447 ... P38333 28244370
    422880 5wyj:K1 (8.7) BS01 rna ? GO:0000447 ... P25586 28244370
    422881 5wyj:MA (8.7) BS01 rna ? GO:0003723 ... P32899 28244370
    422882 5wyj:MB (8.7) BS01 rna ? GO:0005515 ... P53941 28244370
    422883 5wyj:P1 (8.7) BS01 rna ? GO:0000056 ... Q99216 28244370
    422884 5wyj:SC (8.7) BS01 rna ? GO:0000462 ... P33442 28244370
    422885 5wyj:SF (8.7) BS01 rna ? GO:0002181 ... P0CX35 28244370
    422886 5wyj:SG (8.7) BS01 rna ? GO:0000028 ... P26783 28244370
    422887 5wyj:SH (8.7) BS01 rna ? GO:0000462 ... P0CX37 28244370
    422888 5wyj:SJ (8.7) BS01 rna ? GO:0000462 ... P0CX39 28244370
    422889 5wyj:SK (8.7) BS01 rna ? GO:0000462 ... O13516 28244370
    422890 5wyj:SM (8.7) BS01 rna ? GO:0000028 ... P0CX47 28244370
    422891 5wyj:SN (8.7) BS01 rna ? GO:0000028 ... P48589 28244370
    422892 5wyj:SO (8.7) BS01 rna ? GO:0000462 ... P05756 28244370
    422893 5wyj:SP (8.7) BS01 rna ? GO:0000028 ... P06367 28244370
    422894 5wyj:SR (8.7) BS01 rna ? GO:0000462 ... P0CX51 28244370
    422895 5wyj:SX (8.7) BS01 rna ? GO:0002181 ... P0C0W1 28244370
    422896 5wyj:SY (8.7) BS01 rna ? GO:0000462 ... P0CX29 28244370
    422897 5wyj:SZ (8.7) BS01 rna ? GO:0000462 ... P0CX31 28244370
    422898 5wyj:Sc (8.7) BS01 rna ? GO:0000028 ... P35997 28244370
    422899 5wyj:Sd (8.7) BS01 rna ? GO:0000028 ... Q3E7X9 28244370
    422900 5wyj:Sf (8.7) BS01 rna ? GO:0002181 ... P0CX33 28244370
    422901 5wyj:Sg (8.7) BS01 rna ? GO:0000028 ... P05759 28244370
    422902 5wyj:U3 (8.7) BS01 rna N/A N/A N/A 28244370
    422903 5wyj:U4 (8.7) BS01 rna ? GO:0000447 ... Q05498 28244370
    422904 5wyj:U5 (8.7) BS01 rna ? GO:0000462 ... P36144 28244370
    422905 5wyj:UA (8.7) BS01 rna N/A N/A N/A 28244370
    422906 5wyj:UB (8.7) BS01 rna N/A N/A N/A 28244370
    422907 5wyj:UC (8.7) BS01 rna N/A N/A N/A 28244370
    422908 5wyj:UC (8.7) BS02 rna N/A N/A N/A 28244370
    422909 5wyj:UC (8.7) BS03 rna N/A N/A N/A 28244370
    422910 5wyk:3D (4.5) BS01 rna ? GO:0000154 ... Q12460 28244370
    422911 5wyk:3D (4.5) BS02 rna ? GO:0000154 ... Q12460 28244370
    422912 5wyk:3E (4.5) BS01 rna ? GO:0000447 ... Q12499 28244370
    422913 5wyk:3F (4.5) BS01 rna ? GO:0000447 ... Q06506 28244370
    422914 5wyk:3G (4.5) BS01 rna ? GO:0000245 ... P39990 28244370
    422915 5wyk:3H (4.5) BS01 rna ? GO:0000245 ... P39990 28244370
    422916 5wyk:AA (4.5) BS01 rna N/A N/A N/A 28244370
    422917 5wyk:AG (4.5) BS01 rna N/A N/A N/A 28244370
    422918 5wyk:B1 (4.5) BS01 rna ? GO:0000462 ... Q08965 28244370
    422919 5wyk:BB (4.5) BS01 rna ? GO:0000447 ... Q12220 28244370
    422920 5wyk:BC (4.5) BS01 rna ? GO:0000447 ... Q05946 28244370
    422921 5wyk:BE (4.5) BS01 rna ? GO:0003674 ... Q06078 28244370
    422922 5wyk:BE (4.5) BS02 rna ? GO:0003674 ... Q06078 28244370
    422923 5wyk:CA (4.5) BS01 rna ? GO:0000028 ... P25368 28244370
    422924 5wyk:CB (4.5) BS01 rna ? GO:0000028 ... P53254 28244370
    422925 5wyk:E1 (4.5) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 28244370
    422926 5wyk:E2 (4.5) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 28244370
    422927 5wyk:K1 (4.5) BS01 rna ? GO:0000447 ... P25586 28244370
    422928 5wyk:MA (4.5) BS01 rna ? GO:0003723 ... P32899 28244370
    422929 5wyk:MB (4.5) BS01 rna ? GO:0005515 ... P53941 28244370
    422930 5wyk:P1 (4.5) BS01 rna ? GO:0000056 ... Q99216 28244370
    422931 5wyk:SC (4.5) BS01 rna ? GO:0000462 ... P33442 28244370
    422932 5wyk:SF (4.5) BS01 rna ? GO:0002181 ... P0CX35 28244370
    422933 5wyk:SG (4.5) BS01 rna ? GO:0000028 ... P26783 28244370
    422934 5wyk:SJ (4.5) BS01 rna ? GO:0000462 ... P0CX39 28244370
    422935 5wyk:SK (4.5) BS01 rna ? GO:0000462 ... O13516 28244370
    422936 5wyk:SM (4.5) BS01 rna ? GO:0000028 ... P0CX47 28244370
    422937 5wyk:SO (4.5) BS01 rna ? GO:0000462 ... P05756 28244370
    422938 5wyk:SP (4.5) BS01 rna ? GO:0000028 ... P06367 28244370
    422939 5wyk:SR (4.5) BS01 rna ? GO:0000462 ... P0CX51 28244370
    422940 5wyk:SX (4.5) BS01 rna ? GO:0002181 ... P0C0W1 28244370
    422941 5wyk:SY (4.5) BS01 rna ? GO:0000462 ... P0CX29 28244370
    422942 5wyk:SZ (4.5) BS01 rna ? GO:0000462 ... P0CX31 28244370
    422943 5wyk:Sc (4.5) BS01 rna ? GO:0000028 ... P35997 28244370
    422944 5wyk:Sd (4.5) BS01 rna ? GO:0000028 ... Q3E7X9 28244370
    422945 5wyk:Sf (4.5) BS01 rna ? GO:0002181 ... P0CX33 28244370
    422946 5wyk:U4 (4.5) BS01 rna ? GO:0000447 ... Q05498 28244370
    422947 5wyk:U5 (4.5) BS01 rna ? GO:0000462 ... P36144 28244370
    422948 5wyk:UA (4.5) BS01 rna N/A N/A N/A 28244370
    422949 5wyk:UB (4.5) BS01 rna N/A N/A N/A 28244370
    422950 5wyk:UC (4.5) BS01 rna N/A N/A N/A 28244370
    422951 5wyk:UC (4.5) BS02 rna N/A N/A N/A 28244370
    422952 5wyq:A (2.16) BS01 SAM 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422953 5wyq:A (2.16) BS02 SAM 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422954 5wyq:B (2.16) BS01 SAM 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422955 5wyq:B (2.16) BS02 SAM 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422956 5wyr:A (2.45) BS01 SFG 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422957 5wyr:A (2.45) BS02 SFG 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422958 5wyr:B (2.45) BS01 SFG 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422959 5wyr:B (2.45) BS02 SFG 2.1.1.228 GO:0002939 ... Q02RL6 31399541
    422960 5wys:A (2.999) BS01 7V6 1.13.12.7 GO:0004497 ... P08659 28492074
    422961 5wyx:A (2.4) BS01 MAN ? GO:0002224 ... Q9NR97 29155428
    422962 5wyx:A (2.4) BS02 CU8 ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=0.22uM
    422963 5wyx:A (2.4) BS03 CU8 ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=0.22uM
    422964 5wyx:B (2.4) BS01 CU8 ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=0.22uM
    422965 5wyx:B (2.4) BS02 CU8 ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=0.22uM
    422966 5wyz:A (2.3) BS01 7VF ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=21nM
    422967 5wyz:A (2.3) BS02 7VF ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=21nM
    422968 5wyz:B (2.3) BS01 7VF ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=21nM
    422969 5wyz:B (2.3) BS02 7VF ? GO:0002224 ... Q9NR97 29155428 MOAD: Kd=21nM
    422970 5wz1:A (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422971 5wz1:B (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422972 5wz1:C (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422973 5wz1:D (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422974 5wz1:E (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422975 5wz1:F (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422976 5wz1:G (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422977 5wz1:H (2.507) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422978 5wz2:A (2.6) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422979 5wz2:A (2.6) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422980 5wz2:B (2.6) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422981 5wz2:B (2.6) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422982 5wz2:C (2.6) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422983 5wz2:C (2.6) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A109PRQ3 28254839
    422984 5wz3:A (1.804) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A109PRQ3 28254839
    422985 5wz3:A (1.804) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A109PRQ3 28254839
    422986 5wze:A (1.783) BS01 PRO ? GO:0004177 ... Q9HTW6 29259588
    422987 5wze:A (1.783) BS02 MN ? GO:0004177 ... Q9HTW6 29259588
    422988 5wze:A (1.783) BS03 MN ? GO:0004177 ... Q9HTW6 29259588
    422989 5wze:B (1.783) BS01 PRO ? GO:0004177 ... Q9HTW6 29259588
    422990 5wze:B (1.783) BS02 MN ? GO:0004177 ... Q9HTW6 29259588
    422991 5wze:B (1.783) BS03 MN ? GO:0004177 ... Q9HTW6 29259588
    422992 5wze:C (1.783) BS01 PRO ? GO:0004177 ... Q9HTW6 29259588
    422993 5wze:C (1.783) BS02 CA ? GO:0004177 ... Q9HTW6 29259588
    422994 5wze:C (1.783) BS03 MN ? GO:0004177 ... Q9HTW6 29259588
    422995 5wze:C (1.783) BS04 MN ? GO:0004177 ... Q9HTW6 29259588
    422996 5wze:D (1.783) BS01 MN ? GO:0004177 ... Q9HTW6 29259588
    422997 5wze:D (1.783) BS02 MN ? GO:0004177 ... Q9HTW6 29259588
    422998 5wze:D (1.783) BS03 PRO ? GO:0004177 ... Q9HTW6 29259588
    422999 5wzg:A (2.55) BS01 rna ? GO:0003723 ... Q9C552 29036323
    423000 5wzh:A (2.509) BS01 rna ? GO:0003723 ... Q9C552 29036323

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).