SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    424601 5xdx:N (1.99) BS04 MG 7.1.1.9 GO:0004129 ... P00396 29400318
    424602 5xdx:O (1.99) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 29400318
    424603 5xdx:O (1.99) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 29400318
    424604 5xdx:P (1.99) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 29400318
    424605 5xdx:S (1.99) BS01 ZN ? GO:0005740 ... P00428 29400318
    424606 5xdx:W (1.99) BS01 DMU ? GO:0006123 ... P07470 29400318
    424607 5xdx:Z (1.99) BS01 DMU ? GO:0006123 ... P10175 29400318
    424608 5xe0:A (2.3) BS01 GTP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... F1T146 28659472
    424609 5xe1:A (3.2) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 28412361
    424610 5xe1:A (3.2) BS02 IUU 1.13.11.52 GO:0002376 ... P14902 28412361
    424611 5xe1:B (3.2) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 28412361
    424612 5xe1:B (3.2) BS02 IUU 1.13.11.52 GO:0002376 ... P14902 28412361
    424613 5xe5:A (2.17) BS01 MG 3.7.1.4 GO:0016787 ... B1MK49 30784195
    424614 5xe5:B (2.17) BS01 MG 3.7.1.4 GO:0016787 ... B1MK49 30784195
    424615 5xe9:B (3.101) BS01 6CH ? GO:0005524 ... Q8DW05 28642545
    424616 5xec:A (1.1) BS01 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424617 5xec:A (1.1) BS02 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424618 5xec:C (1.1) BS01 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424619 5xec:C (1.1) BS02 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424620 5xed:A (1.55) BS01 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424621 5xed:A (1.55) BS02 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424622 5xed:C (1.55) BS01 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424623 5xed:C (1.55) BS02 HEC ? GO:0005506 ... P00099
    P15452
    28660650
    424624 5xeg:A (1.8) BS01 AKG ? N/A Q10BI6 30061746
    424625 5xeg:A (1.8) BS02 MN ? N/A Q10BI6 30061746
    424626 5xej:A (2.5) BS01 6UV 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 33645533
    424627 5xek:A (-1.00) BS01 ZN ? N/A Q8WVD5 N/A
    424628 5xek:A (-1.00) BS02 ZN ? N/A Q8WVD5 N/A
    424629 5xem:A (1.84) BS01 85F 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424630 5xem:A (1.84) BS02 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424631 5xem:A (1.84) BS03 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424632 5xem:B (1.84) BS01 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424633 5xem:B (1.84) BS02 85F 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424634 5xem:B (1.84) BS03 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424635 5xem:B (1.84) BS04 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424636 5xen:A (1.94) BS01 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424637 5xen:A (1.94) BS02 SER 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424638 5xen:A (1.94) BS03 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424639 5xen:B (1.94) BS01 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424640 5xen:B (1.94) BS02 SER 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424641 5xen:B (1.94) BS03 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424642 5xen:B (1.94) BS04 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424643 5xeo:A (2.03) BS01 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424644 5xeo:B (2.03) BS01 PLP 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424645 5xeo:B (2.03) BS02 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    424646 5xet:C (2.38) BS01 ME8 6.1.1.10 GO:0000166 ... A5U150 30002848
    424647 5xet:C (2.38) BS02 MG 6.1.1.10 GO:0000166 ... A5U150 30002848
    424648 5xet:C (2.38) BS03 MG 6.1.1.10 GO:0000166 ... A5U150 30002848
    424649 5xev:A (1.4) BS01 ZN 3.4.13.9 GO:0006508 ... Q9RX37 28929533
    424650 5xev:A (1.4) BS02 ZN 3.4.13.9 GO:0006508 ... Q9RX37 28929533
    424651 5xey:B (1.82) BS01 83X 3.7.1.4 GO:0016787 ... B1MK49 30784195
    424652 5xez:A (3.0) BS01 97V 3.2.1.17 GO:0003796 ... P00720
    P47871
    28514451
    424653 5xez:B (3.0) BS01 97V 3.2.1.17 GO:0003796 ... P00720
    P47871
    28514451
    424654 5xf1:A (3.19) BS01 97V 3.2.1.17 GO:0003796 ... P00720
    P47871
    28514451
    424655 5xf1:B (3.19) BS01 97V 3.2.1.17 GO:0003796 ... P00720
    P47871
    28514451
    424656 5xf3:A (2.6) BS01 dna ? GO:0000786 ... P68431 29146919
    424657 5xf3:A (2.6) BS02 dna ? GO:0000786 ... P68431 29146919
    424658 5xf3:B (2.6) BS01 dna ? GO:0000781 ... P62805 29146919
    424659 5xf3:B (2.6) BS02 dna ? GO:0000781 ... P62805 29146919
    424660 5xf3:C (2.6) BS01 dna ? GO:0000786 ... P04908 29146919
    424661 5xf3:C (2.6) BS02 dna ? GO:0000786 ... P04908 29146919
    424662 5xf3:D (2.6) BS01 dna ? GO:0000786 ... P06899 29146919
    424663 5xf3:D (2.6) BS02 dna ? GO:0000786 ... P06899 29146919
    424664 5xf3:E (2.6) BS01 dna ? GO:0000786 ... P68431 29146919
    424665 5xf3:E (2.6) BS02 dna ? GO:0000786 ... P68431 29146919
    424666 5xf3:F (2.6) BS01 dna ? GO:0000781 ... P62805 29146919
    424667 5xf3:F (2.6) BS02 dna ? GO:0000781 ... P62805 29146919
    424668 5xf3:G (2.6) BS01 dna ? GO:0000786 ... P04908 29146919
    424669 5xf3:G (2.6) BS02 dna ? GO:0000786 ... P04908 29146919
    424670 5xf3:G (2.6) BS03 RUD ? GO:0000786 ... P04908 29146919
    424671 5xf3:H (2.6) BS01 dna ? GO:0000786 ... P06899 29146919
    424672 5xf3:H (2.6) BS02 dna ? GO:0000786 ... P06899 29146919
    424673 5xf3:H (2.6) BS03 RUD ? GO:0000786 ... P06899 29146919
    424674 5xf4:A (2.87) BS01 dna ? GO:0000786 ... P68431 29146919
    424675 5xf4:A (2.87) BS02 dna ? GO:0000786 ... P68431 29146919
    424676 5xf4:B (2.87) BS01 dna ? GO:0000781 ... P62805 29146919
    424677 5xf4:B (2.87) BS02 dna ? GO:0000781 ... P62805 29146919
    424678 5xf4:C (2.87) BS01 dna ? GO:0000786 ... P04908 29146919
    424679 5xf4:C (2.87) BS02 dna ? GO:0000786 ... P04908 29146919
    424680 5xf4:D (2.87) BS01 dna ? GO:0000786 ... P06899 29146919
    424681 5xf4:D (2.87) BS02 dna ? GO:0000786 ... P06899 29146919
    424682 5xf4:E (2.87) BS01 dna ? GO:0000786 ... P68431 29146919
    424683 5xf4:E (2.87) BS02 dna ? GO:0000786 ... P68431 29146919
    424684 5xf4:F (2.87) BS01 dna ? GO:0000781 ... P62805 29146919
    424685 5xf4:F (2.87) BS02 dna ? GO:0000781 ... P62805 29146919
    424686 5xf4:G (2.87) BS01 dna ? GO:0000786 ... P04908 29146919
    424687 5xf4:G (2.87) BS02 dna ? GO:0000786 ... P04908 29146919
    424688 5xf4:G (2.87) BS03 RUD ? GO:0000786 ... P04908 29146919
    424689 5xf4:H (2.87) BS01 dna ? GO:0000786 ... P06899 29146919
    424690 5xf4:H (2.87) BS02 dna ? GO:0000786 ... P06899 29146919
    424691 5xf4:H (2.87) BS03 RUD ? GO:0000786 ... P06899 29146919
    424692 5xf5:A (2.82) BS01 dna ? GO:0000786 ... P68431 29146919
    424693 5xf5:A (2.82) BS02 dna ? GO:0000786 ... P68431 29146919
    424694 5xf5:B (2.82) BS01 dna ? GO:0000781 ... P62805 29146919
    424695 5xf5:B (2.82) BS02 dna ? GO:0000781 ... P62805 29146919
    424696 5xf5:C (2.82) BS01 dna ? GO:0000786 ... P04908 29146919
    424697 5xf5:C (2.82) BS02 dna ? GO:0000786 ... P04908 29146919
    424698 5xf5:D (2.82) BS01 dna ? GO:0000786 ... P06899 29146919
    424699 5xf5:D (2.82) BS02 dna ? GO:0000786 ... P06899 29146919
    424700 5xf5:E (2.82) BS01 dna ? GO:0000786 ... P68431 29146919
    424701 5xf5:E (2.82) BS02 dna ? GO:0000786 ... P68431 29146919
    424702 5xf5:F (2.82) BS01 dna ? GO:0000781 ... P62805 29146919
    424703 5xf5:F (2.82) BS02 dna ? GO:0000781 ... P62805 29146919
    424704 5xf5:G (2.82) BS01 dna ? GO:0000786 ... P04908 29146919
    424705 5xf5:G (2.82) BS02 dna ? GO:0000786 ... P04908 29146919
    424706 5xf5:G (2.82) BS03 RUD ? GO:0000786 ... P04908 29146919
    424707 5xf5:H (2.82) BS01 dna ? GO:0000786 ... P06899 29146919
    424708 5xf5:H (2.82) BS02 dna ? GO:0000786 ... P06899 29146919
    424709 5xf6:A (2.63) BS01 dna ? GO:0000786 ... P84233 29146919
    424710 5xf6:A (2.63) BS02 dna ? GO:0000786 ... P84233 29146919
    424711 5xf6:B (2.63) BS01 dna ? GO:0000786 ... P62799 29146919
    424712 5xf6:B (2.63) BS02 dna ? GO:0000786 ... P62799 29146919
    424713 5xf6:C (2.63) BS01 dna ? GO:0000786 ... P06897 29146919
    424714 5xf6:C (2.63) BS02 dna ? GO:0000786 ... P06897 29146919
    424715 5xf6:D (2.63) BS01 dna ? GO:0000786 ... P02281 29146919
    424716 5xf6:D (2.63) BS02 dna ? GO:0000786 ... P02281 29146919
    424717 5xf6:E (2.63) BS01 dna ? GO:0000786 ... P84233 29146919
    424718 5xf6:E (2.63) BS02 dna ? GO:0000786 ... P84233 29146919
    424719 5xf6:F (2.63) BS01 dna ? GO:0000786 ... P62799 29146919
    424720 5xf6:F (2.63) BS02 dna ? GO:0000786 ... P62799 29146919
    424721 5xf6:G (2.63) BS01 dna ? GO:0000786 ... P06897 29146919
    424722 5xf6:G (2.63) BS02 dna ? GO:0000786 ... P06897 29146919
    424723 5xf6:G (2.63) BS03 RUD ? GO:0000786 ... P06897 29146919
    424724 5xf6:H (2.63) BS01 dna ? GO:0000786 ... P02281 29146919
    424725 5xf6:H (2.63) BS02 dna ? GO:0000786 ... P02281 29146919
    424726 5xf6:H (2.63) BS03 RUD ? GO:0000786 ... P02281 29146919
    424727 5xf9:A (2.58) BS01 FMN ? GO:0000166 ... A0A077L6X8 28860386
    424728 5xf9:A (2.58) BS02 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    424729 5xf9:B (2.58) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    424730 5xf9:B (2.58) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    424731 5xf9:B (2.58) BS03 FES ? GO:0008137 ... A0A077L885 28860386
    424732 5xf9:C (2.58) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    424733 5xf9:D (2.58) BS01 SF4 ? GO:0008901 ... A0A077LAI5 28860386
    424734 5xf9:D (2.58) BS02 FCO ? GO:0008901 ... A0A077LAI5 28860386
    424735 5xf9:D (2.58) BS03 MG ? GO:0008901 ... A0A077LAI5 28860386
    424736 5xf9:E (2.58) BS01 FMN ? GO:0000166 ... A0A077L6X8 28860386
    424737 5xf9:E (2.58) BS02 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    424738 5xf9:F (2.58) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    424739 5xf9:F (2.58) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    424740 5xf9:F (2.58) BS03 FES ? GO:0008137 ... A0A077L885 28860386
    424741 5xf9:G (2.58) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    424742 5xf9:H (2.58) BS01 SF4 ? GO:0008901 ... A0A077LAI5 28860386
    424743 5xf9:H (2.58) BS02 FCO ? GO:0008901 ... A0A077LAI5 28860386
    424744 5xf9:H (2.58) BS03 MG ? GO:0008901 ... A0A077LAI5 28860386
    424745 5xfa:A (2.7) BS01 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    424746 5xfa:B (2.7) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    424747 5xfa:B (2.7) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    424748 5xfa:B (2.7) BS03 FES ? GO:0008137 ... A0A077L885 28860386
    424749 5xfa:C (2.7) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    424750 5xfa:D (2.7) BS01 FCO ? GO:0008901 ... A0A077LAI5 28860386
    424751 5xfa:D (2.7) BS02 MG ? GO:0008901 ... A0A077LAI5 28860386
    424752 5xfa:E (2.7) BS01 SF4 ? GO:0000166 ... A0A077L6X8 28860386
    424753 5xfa:F (2.7) BS01 SF4 ? GO:0008137 ... A0A077L885 28860386
    424754 5xfa:F (2.7) BS02 SF4 ? GO:0008137 ... A0A077L885 28860386
    424755 5xfa:F (2.7) BS03 FES ? GO:0008137 ... A0A077L885 28860386
    424756 5xfa:G (2.7) BS01 SF4 ? GO:0016491 ... A0A077L7R5 28860386
    424757 5xfa:H (2.7) BS01 FCO ? GO:0008901 ... A0A077LAI5 28860386
    424758 5xfa:H (2.7) BS02 MG ? GO:0008901 ... A0A077LAI5 28860386
    424759 5xfc:A (1.4) BS01 MBE 2.4.1.- N/A Q8WZA1 28989719
    424760 5xfc:B (1.4) BS01 MBE 2.4.1.- N/A Q8WZA1 28989719
    424761 5xfd:A (1.5) BS01 GAL ? GO:0030246 ... A0A2D0TCI3 28989719
    424762 5xfd:B (1.5) BS01 GAL ? GO:0030246 ... A0A2D0TCI3 28989719
    424763 5xfe:A (1.5) BS01 HG ? GO:0004341 ... Q95YI4 28989719
    424764 5xfe:A (1.5) BS02 HG ? GO:0004341 ... Q95YI4 28989719
    424765 5xfe:A (1.5) BS03 MG ? GO:0004341 ... Q95YI4 28989719
    424766 5xff:A (2.7) BS01 6LF 2.7.10.1 GO:0004672 ... P22455 30298149 BindingDB: IC50=6.0nM
    424767 5xfh:A (1.903) BS01 MAN ? GO:0030246 ... Q0JMY8 28973127
    424768 5xfi:A (1.653) BS01 MAN ? GO:0005536 ... P93114 28973127
    424769 5xfi:B (1.653) BS01 MAN ? GO:0005536 ... P93114 28973127
    424770 5xfj:A (3.25) BS01 6LF 2.7.10.1 GO:0004672 ... P22455 30298149 BindingDB: IC50=6.0nM
    424771 5xfm:A (2.3) BS01 CA ? GO:0004339 ... Q8A1K0 28804002
    424772 5xfm:B (2.3) BS01 CA ? GO:0004339 ... Q8A1K0 28804002
    424773 5xfm:C (2.3) BS01 CA ? GO:0004339 ... Q8A1K0 28804002
    424774 5xfm:D (2.3) BS01 CA ? GO:0004339 ... Q8A1K0 28804002
    424775 5xfn:A (1.9) BS01 ZN ? N/A O43189 28869966
    424776 5xfn:A (1.9) BS02 ZN ? N/A O43189 28869966
    424777 5xfn:A (1.9) BS03 ZN ? N/A O43189 28869966
    424778 5xfn:A (1.9) BS04 ZN ? N/A O43189 28869966
    424779 5xfo:A (1.9) BS01 ZN ? N/A O43189 28869966
    424780 5xfo:A (1.9) BS02 ZN ? N/A O43189 28869966
    424781 5xfo:A (1.9) BS03 ZN ? N/A O43189 28869966
    424782 5xfo:A (1.9) BS04 ZN ? N/A O43189 28869966
    424783 5xfp:A (2.3) BS01 ZN ? N/A O43189 28869966
    424784 5xfp:A (2.3) BS02 ZN ? N/A O43189 28869966
    424785 5xfp:A (2.3) BS03 ZN ? N/A O43189 28869966
    424786 5xfp:A (2.3) BS04 ZN ? N/A O43189 28869966
    424787 5xfp:B (2.3) BS01 dna ? N/A O43189 28869966
    424788 5xfp:B (2.3) BS02 dna ? N/A O43189 28869966
    424789 5xfp:B (2.3) BS03 ZN ? N/A O43189 28869966
    424790 5xfp:B (2.3) BS04 ZN ? N/A O43189 28869966
    424791 5xfp:B (2.3) BS05 ZN ? N/A O43189 28869966
    424792 5xfp:B (2.3) BS06 ZN ? N/A O43189 28869966
    424793 5xfp:E (2.3) BS01 ZN ? N/A O43189 28869966
    424794 5xfp:E (2.3) BS02 ZN ? N/A O43189 28869966
    424795 5xfp:E (2.3) BS03 ZN ? N/A O43189 28869966
    424796 5xfp:E (2.3) BS04 ZN ? N/A O43189 28869966
    424797 5xfq:A (2.4) BS01 dna ? N/A Q9Z1B8 28869966
    424798 5xfq:A (2.4) BS02 dna ? N/A Q9Z1B8 28869966
    424799 5xfq:A (2.4) BS03 peptide ? N/A Q9Z1B8 28869966
    424800 5xfq:A (2.4) BS04 ZN ? N/A Q9Z1B8 28869966

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).