SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    425001 5xik:B (2.5) BS02 87C 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425002 5xik:C (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425003 5xik:C (2.5) BS02 87C 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425004 5xik:D (2.5) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425005 5xik:D (2.5) BS02 87C 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425006 5xil:A (1.9) BS01 ZN 6.1.1.15 GO:0000166 ... Q4QDS0 28867614
    425007 5xil:A (1.9) BS02 MG 6.1.1.15 GO:0000166 ... Q4QDS0 28867614
    425008 5xim:A (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    425009 5xim:A (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425010 5xim:B (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    425011 5xim:B (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425012 5xim:C (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    425013 5xim:C (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425014 5xim:D (2.6) BS01 SOR 5.3.1.5 GO:0000287 ... P12851 1610791
    425015 5xim:D (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425016 5xin:A (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    425017 5xin:A (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425018 5xin:B (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    425019 5xin:B (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425020 5xin:C (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    425021 5xin:C (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425022 5xin:D (2.3) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    425023 5xin:D (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    425024 5xio:A (2.46) BS01 HFG 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    425025 5xio:A (2.46) BS02 ZN 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    425026 5xio:A (2.46) BS03 ANP 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    425027 5xio:B (2.46) BS01 ZN 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    425028 5xio:B (2.46) BS02 HFG 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    425029 5xio:B (2.46) BS03 ANP 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    425030 5xip:A (3.1) BS01 ANP 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425031 5xip:A (3.1) BS02 HFG 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425032 5xip:B (3.1) BS01 ANP 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425033 5xip:B (3.1) BS02 HFG 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425034 5xip:C (3.1) BS01 ANP 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425035 5xip:C (3.1) BS02 HFG 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425036 5xip:D (3.1) BS01 ANP 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425037 5xip:D (3.1) BS02 HFG 6.1.1.15 GO:0000166 ... U6KWI1 28867614
    425038 5xiq:A (2.19) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425039 5xiq:A (2.19) BS02 HFG 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425040 5xiq:B (2.19) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425041 5xiq:B (2.19) BS02 HFG 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425042 5xiq:C (2.19) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425043 5xiq:C (2.19) BS02 HFG 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425044 5xiq:D (2.19) BS01 ANP 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425045 5xiq:D (2.19) BS02 HFG 6.1.1.15 GO:0000166 ... S8G8I1 28867614
    425046 5xis:D (1.78) BS01 XYZ 2.3.2.27 N/A Q8IYW5 29330428
    425047 5xiw:A (2.9) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    425048 5xiw:A (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    425049 5xiw:A (2.9) BS03 LOC 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    425050 5xiw:B (2.9) BS01 GDP ? GO:0000226 ... P02554 29691282
    425051 5xiw:B (2.9) BS02 LOC ? GO:0000226 ... P02554 29691282 BindingDB: IC50=1400nM, Kd=3700nM, Ki=5750nM
    425052 5xiw:C (2.9) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    425053 5xiw:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    425054 5xiw:C (2.9) BS03 LOC 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    425055 5xiw:D (2.9) BS01 GTP ? GO:0000226 ... P02554 29691282
    425056 5xiw:D (2.9) BS02 LOC ? GO:0000226 ... P02554 29691282 BindingDB: IC50=1400nM, Kd=3700nM, Ki=5750nM
    425057 5xj0:D (4.004) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 29165680
    425058 5xj2:A (2.84) BS01 rna 2.1.1.- GO:0006396 ... Q97R12 28949991
    425059 5xj2:A (2.84) BS02 SAH 2.1.1.- GO:0006396 ... Q97R12 28949991
    425060 5xj2:B (2.84) BS01 SAH 2.1.1.- GO:0006396 ... Q97R12 28949991
    425061 5xj2:C (2.84) BS01 SAH 2.1.1.- GO:0006396 ... Q97R12 28949991
    425062 5xj2:D (2.84) BS01 SAH 2.1.1.- GO:0006396 ... Q97R12 28949991
    425063 5xj5:A (1.481) BS01 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425064 5xj5:A (1.481) BS02 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425065 5xj5:A (1.481) BS03 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425066 5xj5:A (1.481) BS04 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425067 5xj5:A (1.481) BS05 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425068 5xj5:A (1.481) BS06 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425069 5xj5:A (1.481) BS07 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425070 5xj5:A (1.481) BS08 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425071 5xj5:A (1.481) BS09 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425072 5xj5:A (1.481) BS10 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425073 5xj6:A (2.37) BS01 G3P 2.3.1.275 GO:0005886 ... O66905 29167463
    425074 5xj6:A (2.37) BS02 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425075 5xj7:A (1.772) BS01 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425076 5xj7:A (1.772) BS02 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425077 5xj7:A (1.772) BS03 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425078 5xj7:A (1.772) BS04 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425079 5xj7:A (1.772) BS05 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425080 5xj7:A (1.772) BS06 87O 2.3.1.275 GO:0005886 ... O66905 29167463
    425081 5xj7:A (1.772) BS07 87O 2.3.1.275 GO:0005886 ... O66905 29167463
    425082 5xj7:A (1.772) BS08 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425083 5xj8:A (2.41) BS01 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425084 5xj8:B (2.41) BS01 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425085 5xj8:B (2.41) BS02 NKO 2.3.1.275 GO:0005886 ... O66905 29167463
    425086 5xj9:A (1.83) BS01 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425087 5xj9:A (1.83) BS02 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425088 5xj9:A (1.83) BS03 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425089 5xj9:A (1.83) BS04 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425090 5xj9:A (1.83) BS05 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    425091 5xj9:A (1.83) BS06 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425092 5xj9:A (1.83) BS07 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425093 5xj9:A (1.83) BS08 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425094 5xj9:A (1.83) BS09 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425095 5xj9:A (1.83) BS10 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425096 5xj9:A (1.83) BS11 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425097 5xj9:A (1.83) BS12 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425098 5xj9:A (1.83) BS13 78M 2.3.1.275 GO:0005886 ... O66905 29167463
    425099 5xja:A (3.43) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    425100 5xja:A (3.43) BS02 AF3 ? GO:0003777 ... Q922S8 28903043
    425101 5xja:B (3.43) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    425102 5xja:B (3.43) BS02 AF3 ? GO:0003777 ... Q922S8 28903043
    425103 5xjb:A (3.1) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    425104 5xjb:A (3.1) BS02 BEF ? GO:0003777 ... Q922S8 28903043
    425105 5xjb:A (3.1) BS03 MG ? GO:0003777 ... Q922S8 28903043
    425106 5xjb:B (3.1) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    425107 5xjb:B (3.1) BS02 BEF ? GO:0003777 ... Q922S8 28903043
    425108 5xjb:B (3.1) BS03 MG ? GO:0003777 ... Q922S8 28903043
    425109 5xjc:A (3.6) BS01 rna ? GO:0000244 ... Q6P2Q9 28502770
    425110 5xjc:A (3.6) BS02 rna ? GO:0000244 ... Q6P2Q9 28502770
    425111 5xjc:A (3.6) BS03 rna ? GO:0000244 ... Q6P2Q9 28502770
    425112 5xjc:A (3.6) BS04 rna ? GO:0000244 ... Q6P2Q9 28502770
    425113 5xjc:A (3.6) BS05 peptide ? GO:0000244 ... Q6P2Q9 28502770
    425114 5xjc:A (3.6) BS06 IHP ? GO:0000244 ... Q6P2Q9 28502770
    425115 5xjc:C (3.6) BS01 rna ? GO:0000398 ... Q15029 28502770
    425116 5xjc:C (3.6) BS02 GTP ? GO:0000398 ... Q15029 28502770
    425117 5xjc:D (3.6) BS01 ADP 3.6.4.13 GO:0000354 ... O75643 28502770
    425118 5xjc:D (3.6) BS02 ADP 3.6.4.13 GO:0000354 ... O75643 28502770
    425119 5xjc:J (3.6) BS01 rna ? GO:0000245 ... Q9BZJ0 28502770
    425120 5xjc:L (3.6) BS01 rna ? GO:0000077 ... Q99459 28502770
    425121 5xjc:M (3.6) BS01 rna ? GO:0000398 ... O95926 28502770
    425122 5xjc:M (3.6) BS02 rna ? GO:0000398 ... O95926 28502770
    425123 5xjc:N (3.6) BS01 rna ? GO:0000398 ... P41223 28502770
    425124 5xjc:N (3.6) BS02 ZN ? GO:0000398 ... P41223 28502770
    425125 5xjc:N (3.6) BS03 ZN ? GO:0000398 ... P41223 28502770
    425126 5xjc:N (3.6) BS04 ZN ? GO:0000398 ... P41223 28502770
    425127 5xjc:O (3.6) BS01 rna ? GO:0000398 ... Q9NW64 28502770
    425128 5xjc:O (3.6) BS02 rna ? GO:0000398 ... Q9NW64 28502770
    425129 5xjc:O (3.6) BS03 ZN ? GO:0000398 ... Q9NW64 28502770
    425130 5xjc:O (3.6) BS04 ZN ? GO:0000398 ... Q9NW64 28502770
    425131 5xjc:P (3.6) BS01 rna ? GO:0000398 ... Q9P013 28502770
    425132 5xjc:P (3.6) BS02 rna ? GO:0000398 ... Q9P013 28502770
    425133 5xjc:P (3.6) BS03 rna ? GO:0000398 ... Q9P013 28502770
    425134 5xjc:Q (3.6) BS01 rna 3.6.4.13 GO:0000398 ... O60306 28502770
    425135 5xjc:Q (3.6) BS02 ATP 3.6.4.13 GO:0000398 ... O60306 28502770
    425136 5xjc:R (3.6) BS01 rna ? GO:0000122 ... Q13573 28502770
    425137 5xjc:R (3.6) BS02 rna ? GO:0000122 ... Q13573 28502770
    425138 5xjc:T (3.6) BS01 rna ? GO:0000398 ... O43660 28502770
    425139 5xjc:V (3.6) BS01 peptide ? GO:0000398 ... Q9HCG8 28502770
    425140 5xjc:W (3.6) BS01 rna ? GO:0000398 ... O60508 28502770
    425141 5xjc:W (3.6) BS02 rna ? GO:0000398 ... O60508 28502770
    425142 5xjc:W (3.6) BS03 rna ? GO:0000398 ... O60508 28502770
    425143 5xjc:X (3.6) BS01 rna ? GO:0003014 ... Q9H875 28502770
    425144 5xjc:X (3.6) BS02 rna ? GO:0003014 ... Q9H875 28502770
    425145 5xjc:Z (3.6) BS01 IHP ? GO:0000375 ... O95391 28502770
    425146 5xjc:Z (3.6) BS02 ZN ? GO:0000375 ... O95391 28502770
    425147 5xjc:a (3.6) BS01 rna ? GO:0000243 ... P62318 28502770
    425148 5xjc:b (3.6) BS01 rna ? GO:0000387 ... P14678 28502770
    425149 5xjc:c (3.6) BS01 rna ? GO:0000243 ... P62314 28502770
    425150 5xjc:d (3.6) BS01 rna ? GO:0000245 ... P62316 28502770
    425151 5xjc:e (3.6) BS01 rna ? GO:0000245 ... P62304 28502770
    425152 5xjc:f (3.6) BS01 rna ? GO:0000387 ... P62306 28502770
    425153 5xjc:g (3.6) BS01 rna ? GO:0000245 ... P62308 28502770
    425154 5xjc:h (3.6) BS01 rna ? GO:0000243 ... P62318 28502770
    425155 5xjc:i (3.6) BS01 rna ? GO:0000387 ... P14678 28502770
    425156 5xjc:j (3.6) BS01 rna ? GO:0000243 ... P62314 28502770
    425157 5xjc:k (3.6) BS01 rna ? GO:0000245 ... P62316 28502770
    425158 5xjc:l (3.6) BS01 rna ? GO:0000245 ... P62304 28502770
    425159 5xjc:m (3.6) BS01 rna ? GO:0000387 ... P62306 28502770
    425160 5xjc:n (3.6) BS01 rna ? GO:0000245 ... P62308 28502770
    425161 5xjc:p (3.6) BS01 rna ? GO:0000398 ... P08579 28502770
    425162 5xjc:u (3.6) BS01 rna 3.6.4.13 GO:0000184 ... P38919 28502770
    425163 5xjc:u (3.6) BS02 peptide 3.6.4.13 GO:0000184 ... P38919 28502770
    425164 5xjc:u (3.6) BS03 ATP 3.6.4.13 GO:0000184 ... P38919 28502770
    425165 5xjc:v (3.6) BS01 peptide ? GO:0000184 ... Q96A72 28502770
    425166 5xjd:A (2.22) BS01 87L ? N/A Q62296 28570566
    425167 5xjd:B (2.22) BS01 87L ? N/A Q62296 28570566 MOAD: Kd~300uM
    425168 5xje:A (2.4) BS01 GAL ? N/A P0DOX5 29062024
    425169 5xje:B (2.4) BS01 BMA ? N/A P0DOX5 29062024
    425170 5xje:B (2.4) BS02 GAL ? N/A P0DOX5 29062024
    425171 5xjf:A (2.5) BS01 GAL ? N/A P0DOX5 29062024
    425172 5xjf:B (2.5) BS01 GAL ? N/A P0DOX5 29062024
    425173 5xjl:2 (2.5) BS01 peptide ? GO:0000245 ... O14893 21816274
    425174 5xjm:A (3.2) BS01 peptide ? GO:0004930 ... P0ABE7
    P50052
    29967536
    425175 5xjn:A (1.7) BS01 88L ? GO:0004497 ... Q8NSW2 28607077
    425176 5xjn:A (1.7) BS02 HEM ? GO:0004497 ... Q8NSW2 28607077
    425177 5xjp:A (1.597) BS01 MG ? GO:0000160 ... Q6TA00 28934482
    425178 5xjq:2 (3.28) BS01 peptide ? GO:0000245 ... O14893 31799625
    425179 5xjr:2 (3.12) BS01 peptide ? GO:0000245 ... O14893 31799625
    425180 5xjs:2 (3.38) BS01 peptide ? GO:0000245 ... O14893 31799625
    425181 5xjt:2 (2.92) BS01 peptide ? GO:0000245 ... O14893 N/A
    425182 5xju:2 (2.58) BS01 peptide ? GO:0000245 ... O14893 N/A
    425183 5xk6:A (1.58) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425184 5xk6:A (1.58) BS02 POP ? GO:0016094 ... M4T4U9 29215779
    425185 5xk6:B (1.58) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425186 5xk6:B (1.58) BS02 POP ? GO:0016094 ... M4T4U9 29215779
    425187 5xk6:C (1.58) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425188 5xk6:C (1.58) BS02 POP ? GO:0016094 ... M4T4U9 29215779
    425189 5xk6:D (1.58) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425190 5xk6:D (1.58) BS02 POP ? GO:0016094 ... M4T4U9 29215779
    425191 5xk7:A (1.911) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425192 5xk7:A (1.911) BS02 POP ? GO:0016094 ... M4T4U9 29215779
    425193 5xk7:A (1.911) BS03 DMA ? GO:0016094 ... M4T4U9 29215779
    425194 5xk7:B (1.911) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425195 5xk7:B (1.911) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425196 5xk7:C (1.911) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425197 5xk7:C (1.911) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425198 5xk7:C (1.911) BS03 DMA ? GO:0016094 ... M4T4U9 29215779
    425199 5xk7:D (1.911) BS01 POP ? GO:0016094 ... M4T4U9 29215779
    425200 5xk7:D (1.911) BS02 DMA ? GO:0016094 ... M4T4U9 29215779

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).