SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    425201 5xk8:A (2.304) BS01 GPP ? GO:0016094 ... M4T4U9 29215779
    425202 5xk8:B (2.304) BS01 GPP ? GO:0016094 ... M4T4U9 29215779
    425203 5xk8:C (2.304) BS01 GPP ? GO:0016094 ... M4T4U9 29215779
    425204 5xk8:D (2.304) BS01 GPP ? GO:0016094 ... M4T4U9 29215779
    425205 5xk9:A (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425206 5xk9:A (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425207 5xk9:A (2.137) BS03 DMA ? GO:0016094 ... M4T4U9 29215779
    425208 5xk9:B (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425209 5xk9:B (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425210 5xk9:C (2.137) BS01 MG ? GO:0016094 ... M4T4U9 29215779
    425211 5xk9:C (2.137) BS02 GST ? GO:0016094 ... M4T4U9 29215779
    425212 5xk9:C (2.137) BS03 DMA ? GO:0016094 ... M4T4U9 29215779
    425213 5xk9:C (2.137) BS04 GST ? GO:0016094 ... M4T4U9 29215779
    425214 5xk9:D (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425215 5xk9:D (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425216 5xk9:E (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425217 5xk9:E (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425218 5xk9:F (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425219 5xk9:F (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425220 5xk9:G (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425221 5xk9:G (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425222 5xk9:G (2.137) BS03 GST ? GO:0016094 ... M4T4U9 29215779
    425223 5xk9:H (2.137) BS01 GST ? GO:0016094 ... M4T4U9 29215779
    425224 5xk9:H (2.137) BS02 DMA ? GO:0016094 ... M4T4U9 29215779
    425225 5xkb:A (1.9) BS01 WVP ? GO:0046872 ... G3XD33 28921809
    425226 5xkb:B (1.9) BS01 WVP ? GO:0046872 ... G3XD33 28921809
    425227 5xkd:A (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    425228 5xkd:B (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    425229 5xkd:C (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    425230 5xkd:D (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    425231 5xke:A (2.6) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425232 5xke:A (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425233 5xke:B (2.6) BS01 GDP ? GO:0000226 ... P02554 N/A
    425234 5xke:B (2.6) BS02 LON ? GO:0000226 ... P02554 N/A
    425235 5xke:C (2.6) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425236 5xke:C (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425237 5xke:D (2.6) BS01 GTP ? GO:0000226 ... P02554 N/A
    425238 5xke:D (2.6) BS02 LON ? GO:0000226 ... P02554 N/A
    425239 5xkf:A (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425240 5xkf:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425241 5xkf:B (2.8) BS01 GDP ? GO:0000226 ... P02554 N/A
    425242 5xkf:B (2.8) BS02 88U ? GO:0000226 ... P02554 N/A
    425243 5xkf:C (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425244 5xkf:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425245 5xkf:D (2.8) BS01 GTP ? GO:0000226 ... P02554 N/A
    425246 5xkf:D (2.8) BS02 88U ? GO:0000226 ... P02554 N/A
    425247 5xkg:A (2.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425248 5xkg:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425249 5xkg:A (2.2) BS03 890 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425250 5xkg:B (2.2) BS01 GDP ? GO:0000226 ... P02554 N/A
    425251 5xkg:B (2.2) BS02 890 ? GO:0000226 ... P02554 N/A
    425252 5xkg:C (2.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425253 5xkg:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425254 5xkg:C (2.2) BS03 890 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425255 5xkg:D (2.2) BS01 GTP ? GO:0000226 ... P02554 N/A
    425256 5xkg:D (2.2) BS02 890 ? GO:0000226 ... P02554 N/A
    425257 5xkh:A (2.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425258 5xkh:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425259 5xkh:A (2.25) BS03 89C 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425260 5xkh:B (2.25) BS01 GDP ? GO:0000226 ... P02554 N/A
    425261 5xkh:B (2.25) BS02 89C ? GO:0000226 ... P02554 N/A
    425262 5xkh:C (2.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425263 5xkh:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425264 5xkh:C (2.25) BS03 89C 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    425265 5xkh:D (2.25) BS01 89C ? GO:0000226 ... P02554 N/A
    425266 5xkh:D (2.25) BS02 GTP ? GO:0000226 ... P02554 N/A
    425267 5xki:A (2.46) BS01 FAD 1.8.3.2 GO:0016491 ... P41480 28904203
    425268 5xki:B (2.46) BS01 FAD 1.8.3.2 GO:0016491 ... P41480 28904203
    425269 5xkm:A (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    425270 5xkm:A (2.16) BS02 87R 3.1.4.17 GO:0004114 ... O00408 28759228 MOAD: ic50=24nM
    BindingDB: IC50=53nM
    425271 5xkm:B (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    425272 5xkm:B (2.16) BS02 87R 3.1.4.17 GO:0004114 ... O00408 28759228 MOAD: ic50=24nM
    BindingDB: IC50=53nM
    425273 5xkm:C (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    425274 5xkm:C (2.16) BS02 87R 3.1.4.17 GO:0004114 ... O00408 28759228 MOAD: ic50=24nM
    BindingDB: IC50=53nM
    425275 5xkm:D (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    425276 5xkm:D (2.16) BS02 87R 3.1.4.17 GO:0004114 ... O00408 28759228 MOAD: ic50=24nM
    BindingDB: IC50=53nM
    425277 5xkm:E (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    425278 5xkm:E (2.16) BS02 87R 3.1.4.17 GO:0004114 ... O00408 28759228 MOAD: ic50=24nM
    BindingDB: IC50=53nM
    425279 5xkm:F (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    425280 5xkm:F (2.16) BS02 87R 3.1.4.17 GO:0004114 ... O00408 28759228 MOAD: ic50=24nM
    BindingDB: IC50=53nM
    425281 5xko:A (1.89) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    425282 5xko:B (1.89) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    425283 5xkp:A (3.0) BS01 5AZ ? GO:0003824 ... A0QY90 28708393
    425284 5xkp:A (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425285 5xkp:B (3.0) BS01 5AZ ? GO:0003824 ... A0QY90 28708393
    425286 5xkp:B (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425287 5xkp:C (3.0) BS01 5AZ ? GO:0003824 ... A0QY90 28708393
    425288 5xkp:C (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425289 5xkp:D (3.0) BS01 5AZ ? GO:0003824 ... A0QY90 28708393
    425290 5xkp:D (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425291 5xkq:A (2.7) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    425292 5xkq:A (2.7) BS02 6AM ? GO:0003824 ... A0QY90 28708393
    425293 5xkq:B (2.7) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    425294 5xkq:B (2.7) BS02 6AM ? GO:0003824 ... A0QY90 28708393
    425295 5xkq:C (2.7) BS01 6AM ? GO:0003824 ... A0QY90 28708393
    425296 5xkq:C (2.7) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425297 5xkq:D (2.7) BS01 6AM ? GO:0003824 ... A0QY90 28708393
    425298 5xkq:D (2.7) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425299 5xkr:A (1.38) BS01 BZE ? GO:0003824 ... A0QY90 28708393 MOAD: Kd=7uM
    425300 5xkr:A (1.38) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425301 5xkr:B (1.38) BS01 BZE ? GO:0003824 ... A0QY90 28708393 MOAD: Kd=7uM
    425302 5xkr:B (1.38) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425303 5xkr:C (1.38) BS01 BZE ? GO:0003824 ... A0QY90 28708393 MOAD: Kd=7uM
    425304 5xkr:C (1.38) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    425305 5xkr:D (1.38) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    425306 5xkr:D (1.38) BS02 BZE ? GO:0003824 ... A0QY90 28708393 MOAD: Kd=7uM
    425307 5xkt:A (1.8) BS01 GNP N/A GO:0003924 ... N/A 29203664
    425308 5xkt:A (1.8) BS02 NI N/A GO:0003924 ... N/A 29203664
    425309 5xkt:A (1.8) BS03 NI N/A GO:0003924 ... N/A 29203664
    425310 5xkt:A (1.8) BS04 GNP N/A GO:0003924 ... N/A 29203664
    425311 5xkt:B (1.8) BS01 GNP N/A GO:0003924 ... N/A 29203664
    425312 5xkt:B (1.8) BS02 NI N/A GO:0003924 ... N/A 29203664
    425313 5xkt:B (1.8) BS03 GNP N/A GO:0003924 ... N/A 29203664
    425314 5xkt:B (1.8) BS04 NI N/A GO:0003924 ... N/A 29203664
    425315 5xkv:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28795725
    425316 5xkw:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28795725
    425317 5xkx:A (1.5) BS01 ZN ? GO:0047869 ... N8X9V6 29106934
    425318 5xky:A (2.303) BS01 ZN ? GO:0047869 ... N8X9V6 29106934
    425319 5xl0:A (1.25) BS01 89R 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28758387
    425320 5xl3:A (2.203) BS01 SIA ? GO:0019031 ... P19696 28768203
    425321 5xl3:B (2.203) BS01 SIA ? GO:0019031 ... P19696 28768203
    425322 5xl4:A (2.102) BS01 SIA ? GO:0019031 ... P19696 28768203
    425323 5xl4:B (2.102) BS01 SIA ? GO:0019031 ... P19696 28768203
    425324 5xl6:A (2.41) BS01 SIA ? GO:0019031 ... P19696 28768203
    425325 5xl7:A (2.1) BS01 SIA ? GO:0019031 ... P19696 28768203
    425326 5xl7:B (2.1) BS01 SIA ? GO:0019031 ... P19696 28768203
    425327 5xl9:A (2.39) BS01 SIA ? GO:0016020 ... P19696 28768203
    425328 5xla:A (2.1) BS01 SIA ? GO:0016020 ... P19696 28768203
    425329 5xla:B (2.1) BS01 SIA ? GO:0016020 ... P19696 28768203
    425330 5xlc:A (2.4) BS01 SIA ? GO:0019031 ... P19696 28768203
    425331 5xlc:B (2.4) BS01 SIA ? GO:0019031 ... P19696 28768203
    425332 5xld:A (2.3) BS01 SIA ? GO:0019031 ... P19696 28768203
    425333 5xld:B (2.3) BS01 SIA ? GO:0019031 ... P19696 28768203
    425334 5xle:L (1.69) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    425335 5xle:L (1.69) BS02 NFU 1.12.2.1 GO:0008901 ... P21852 28967475
    425336 5xle:L (1.69) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    425337 5xle:S (1.69) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425338 5xle:S (1.69) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425339 5xle:S (1.69) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    425340 5xlf:L (1.71) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    425341 5xlf:L (1.71) BS02 NFV 1.12.2.1 GO:0008901 ... P21852 28967475
    425342 5xlf:L (1.71) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    425343 5xlf:S (1.71) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425344 5xlf:S (1.71) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425345 5xlf:S (1.71) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    425346 5xlg:L (1.64) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    425347 5xlg:L (1.64) BS02 NFV 1.12.2.1 GO:0008901 ... P21852 28967475
    425348 5xlg:L (1.64) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    425349 5xlg:S (1.64) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425350 5xlg:S (1.64) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425351 5xlg:S (1.64) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    425352 5xlh:L (1.93) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 28967475
    425353 5xlh:L (1.93) BS02 NFV 1.12.2.1 GO:0008901 ... P21852 28967475
    425354 5xlh:L (1.93) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    425355 5xlh:S (1.93) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425356 5xlh:S (1.93) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 28967475
    425357 5xlh:S (1.93) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 28967475
    425358 5xlk:C (3.05) BS01 ZN ? GO:0007155 ... A0A0P0QFX8 28527888
    425359 5xln:A (1.9) BS01 peptide ? GO:0003723 ... O60573 30902983
    425360 5xlo:A (3.8) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425361 5xlo:B (3.8) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425362 5xlo:C (3.8) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425363 5xlo:D (3.8) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425364 5xlo:E (3.8) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425365 5xlo:F (3.8) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425366 5xlp:C (4.2) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425367 5xlp:D (4.2) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425368 5xlp:E (4.2) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425369 5xlp:F (4.2) BS01 rna ? GO:0005515 ... Q02MM1 28574055
    425370 5xls:A (2.5) BS01 URA ? GO:0005886 ... P0AGM8 28621327
    425371 5xls:A (2.5) BS02 KEG ? GO:0005886 ... P0AGM8 28621327
    425372 5xls:A (2.5) BS03 KEG ? GO:0005886 ... P0AGM8 28621327
    425373 5xlt:A (2.813) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28864414
    425374 5xlt:A (2.813) BS02 CA 3.6.5.- GO:0000226 ... P81947 28864414
    425375 5xlt:B (2.813) BS01 GDP ? GO:0000226 ... Q6B856 28864414
    425376 5xlt:B (2.813) BS02 89O ? GO:0000226 ... Q6B856 28864414
    425377 5xlt:C (2.813) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28864414
    425378 5xlt:C (2.813) BS02 CA 3.6.5.- GO:0000226 ... P81947 28864414
    425379 5xlt:D (2.813) BS01 GDP ? GO:0000226 ... Q6B856 28864414
    425380 5xlt:D (2.813) BS02 89O ? GO:0000226 ... Q6B856 28864414
    425381 5xlt:F (2.813) BS01 ACP N/A GO:0036211 ... N/A 28864414
    425382 5xlu:B (1.45) BS01 AVN 2.3.2.2
    3.4.19.13
    N/A A9YTT0 N/A
    425383 5xlx:A (1.969) BS01 SAH 2.1.1.80 GO:0008168 ... O87131 28777083
    425384 5xlx:B (1.969) BS01 SAH 2.1.1.80 GO:0008168 ... O87131 28777083
    425385 5xlx:C (1.969) BS01 SAH 2.1.1.80 GO:0008168 ... O87131 28777083
    425386 5xlx:D (1.969) BS01 SAH 2.1.1.80 GO:0008168 ... O87131 28777083
    425387 5xly:B (1.763) BS01 C2E ? GO:0000166 ... Q9HVI1 28777083
    425388 5xly:B (1.763) BS02 C2E ? GO:0000166 ... Q9HVI1 28777083
    425389 5xlz:A (2.298) BS01 GTP 3.6.5.- GO:0000226 ... P81947 29102632
    425390 5xlz:A (2.298) BS02 CA 3.6.5.- GO:0000226 ... P81947 29102632
    425391 5xlz:B (2.298) BS01 GDP ? GO:0000226 ... Q6B856 29102632
    425392 5xlz:B (2.298) BS02 89U ? GO:0000226 ... Q6B856 29102632
    425393 5xlz:C (2.298) BS01 GTP 3.6.5.- GO:0000226 ... P81947 29102632
    425394 5xlz:C (2.298) BS02 CA 3.6.5.- GO:0000226 ... P81947 29102632
    425395 5xlz:C (2.298) BS03 89U 3.6.5.- GO:0000226 ... P81947 29102632
    425396 5xlz:D (2.298) BS01 GTP ? GO:0000226 ... Q6B856 29102632
    425397 5xlz:D (2.298) BS02 89U ? GO:0000226 ... Q6B856 29102632
    425398 5xlz:F (2.298) BS01 ACP N/A GO:0036211 ... N/A 29102632
    425399 5xm0:A (2.874) BS01 dna ? GO:0000775 ... P84244 29643389
    425400 5xm0:A (2.874) BS02 dna ? GO:0000775 ... P84244 29643389

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).