SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427601 5xwy:A (3.2) BS01 rna 3.1.-.- GO:0003723 ... C7NBY4 28757251
    427602 5xx1:B (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427603 5xx1:C (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427604 5xx1:C (3.1) BS02 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427605 5xx1:D (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427606 5xx1:E (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427607 5xx1:F (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427608 5xx1:G (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427609 5xx1:H (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427610 5xx1:I (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    427611 5xx9:A (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    427612 5xx9:B (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    427613 5xx9:C (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    427614 5xx9:D (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    427615 5xx9:E (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    427616 5xx9:F (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    427617 5xxb:A (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    427618 5xxb:B (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427619 5xxb:C (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427620 5xxb:C (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427621 5xxb:D (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427622 5xxb:D (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427623 5xxb:E (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427624 5xxb:F (3.17) BS01 rna N/A GO:0000463 ... N/A 28809395
    427625 5xxb:F (3.17) BS02 rna N/A GO:0000463 ... N/A 28809395
    427626 5xxb:G (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    427627 5xxb:G (3.17) BS02 rna N/A GO:0003723 ... N/A 28809395
    427628 5xxb:H (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427629 5xxb:I (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427630 5xxb:I (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427631 5xxb:J (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427632 5xxb:J (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427633 5xxb:K (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427634 5xxb:K (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427635 5xxb:L (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    427636 5xxb:M (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427637 5xxb:M (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427638 5xxb:N (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427639 5xxb:O (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427640 5xxb:O (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427641 5xxb:P (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427642 5xxb:Q (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    427643 5xxb:R (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427644 5xxb:R (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427645 5xxb:S (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427646 5xxb:T (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427647 5xxb:U (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427648 5xxb:V (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427649 5xxb:W (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427650 5xxb:W (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427651 5xxb:X (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    427652 5xxb:X (3.17) BS02 rna N/A GO:0003723 ... N/A 28809395
    427653 5xxb:Y (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427654 5xxb:Z (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427655 5xxb:a (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427656 5xxb:b (3.17) BS01 rna N/A GO:0003723 ... N/A 28809395
    427657 5xxb:c (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427658 5xxb:d (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427659 5xxb:e (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427660 5xxb:f (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427661 5xxb:g (3.17) BS01 rna N/A GO:0000463 ... N/A 28809395
    427662 5xxb:g (3.17) BS02 rna N/A GO:0000463 ... N/A 28809395
    427663 5xxb:h (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427664 5xxb:i (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427665 5xxb:i (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427666 5xxb:j (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427667 5xxb:k (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427668 5xxb:k (3.17) BS02 rna N/A GO:0003735 ... N/A 28809395
    427669 5xxb:l (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427670 5xxb:n (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427671 5xxb:o (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427672 5xxb:p (3.17) BS01 rna N/A GO:0003735 ... N/A 28809395
    427673 5xxd:A (2.314) BS01 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427674 5xxd:A (2.314) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427675 5xxd:A (2.314) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427676 5xxd:A (2.314) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427677 5xxd:A (2.314) BS05 8NR 2.1.1.354 GO:0000978 ... Q9H7B4 N/A BindingDB: IC50=>750000nM
    427678 5xxe:C (2.5) BS01 ZN ? N/A O14246 29160296
    427679 5xxe:D (2.5) BS01 ZN ? N/A O14246 29160296
    427680 5xxf:A (3.1) BS01 peptide ? GO:0000723 ... O13852 29160296
    427681 5xxf:B (3.1) BS01 peptide ? GO:0000723 ... O13852 29160296
    427682 5xxf:C (3.1) BS01 ZN ? N/A O14246 29160296
    427683 5xxf:D (3.1) BS01 ZN ? N/A O14246 29160296
    427684 5xxg:A (2.14) BS01 8HR 2.1.1.354 GO:0000978 ... Q9H7B4 N/A BindingDB: IC50=300nM, Ki=3900nM
    427685 5xxg:A (2.14) BS02 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427686 5xxg:A (2.14) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427687 5xxg:A (2.14) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427688 5xxg:A (2.14) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427689 5xxh:A (1.62) BS01 E0D 2.3.1.-
    2.3.1.48
    N/A Q92793 29448139 MOAD: ic50=6.8uM
    BindingDB: IC50=6800nM
    427690 5xxi:A (2.3) BS01 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 28972767
    427691 5xxi:A (2.3) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 28972767
    427692 5xxi:A (2.3) BS03 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 28972767
    427693 5xxi:A (2.3) BS04 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 28972767
    427694 5xxj:A (1.689) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427695 5xxj:A (1.689) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427696 5xxj:A (1.689) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427697 5xxj:A (1.689) BS04 8HF 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427698 5xxj:A (1.689) BS05 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    427699 5xxk:A (1.66) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 29228061
    427700 5xxk:A (1.66) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 29228061
    427701 5xxk:B (1.66) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 29228061
    427702 5xxk:B (1.66) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 29228061
    427703 5xxl:A (1.6) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427704 5xxl:B (1.6) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427705 5xxm:A (1.7) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427706 5xxm:A (1.7) BS02 LGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427707 5xxm:B (1.7) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427708 5xxm:B (1.7) BS02 LGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427709 5xxn:A (2.05) BS01 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427710 5xxn:A (2.05) BS02 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427711 5xxn:A (2.05) BS03 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427712 5xxn:A (2.05) BS04 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427713 5xxn:A (2.05) BS05 GLC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427714 5xxn:B (2.05) BS01 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427715 5xxn:B (2.05) BS02 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427716 5xxn:B (2.05) BS03 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427717 5xxn:B (2.05) BS04 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427718 5xxo:A (2.02) BS01 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427719 5xxo:A (2.02) BS02 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427720 5xxo:A (2.02) BS03 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427721 5xxo:B (2.02) BS01 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427722 5xxo:B (2.02) BS02 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427723 5xxo:B (2.02) BS03 BGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427724 5xxo:B (2.02) BS04 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    427725 5xxp:A (2.55) BS01 dna ? GO:0003700 ... Q9WXC7 29323785
    427726 5xxp:A (2.55) BS02 dna ? GO:0003700 ... Q9WXC7 29323785
    427727 5xxp:B (2.55) BS01 dna ? GO:0003700 ... Q9WXC7 29323785
    427728 5xxp:B (2.55) BS02 dna ? GO:0003700 ... Q9WXC7 29323785
    427729 5xxq:A (1.9) BS01 peptide ? GO:0000118 ... Q09028 N/A
    427730 5xxq:B (1.9) BS01 peptide ? GO:0000118 ... Q09028 N/A
    427731 5xxr:A (2.647) BS01 COA 2.3.1.- GO:0009231 ... P17622 29241954
    427732 5xxr:A (2.647) BS02 COA 2.3.1.- GO:0009231 ... P17622 29241954
    427733 5xxr:B (2.647) BS01 COA 2.3.1.- GO:0009231 ... P17622 29241954
    427734 5xxs:A (2.09) BS01 COA 2.3.1.- GO:0009231 ... P17622 29241954
    427735 5xxs:A (2.09) BS02 COA 2.3.1.- GO:0009231 ... P17622 29241954
    427736 5xxs:B (2.09) BS01 COA 2.3.1.- GO:0009231 ... P17622 29241954
    427737 5xxt:A (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427738 5xxt:B (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427739 5xxt:B (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427740 5xxt:C (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427741 5xxt:D (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427742 5xxt:D (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427743 5xxt:E (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427744 5xxt:F (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427745 5xxt:F (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427746 5xxt:G (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427747 5xxt:H (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427748 5xxt:H (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427749 5xxt:I (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427750 5xxt:J (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427751 5xxt:J (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427752 5xxt:K (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427753 5xxt:L (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427754 5xxt:L (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427755 5xxt:M (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427756 5xxt:N (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427757 5xxt:N (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427758 5xxt:O (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427759 5xxt:P (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427760 5xxt:P (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427761 5xxt:Q (5.35) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427762 5xxt:R (5.35) BS01 GTP ? GO:0000226 ... P02554 30297389
    427763 5xxt:R (5.35) BS02 GDP ? GO:0000226 ... P02554 30297389
    427764 5xxu:A (3.35) BS01 rna ? GO:0000028 ... Q8MPF7 28809395
    427765 5xxu:B (3.35) BS01 rna ? GO:0003735 ... B9PGG2 28809395
    427766 5xxu:C (3.35) BS01 rna ? GO:0003723 ... B9PZF2 28809395
    427767 5xxu:D (3.35) BS01 rna ? GO:0003723 ... A0A0F7UXI8 28809395
    427768 5xxu:E (3.35) BS01 rna N/A GO:0003723 ... N/A 28809395
    427769 5xxu:F (3.35) BS01 rna ? GO:0003723 ... B9PPE8 28809395
    427770 5xxu:G (3.35) BS01 rna ? GO:0003735 ... B9PVR5 28809395
    427771 5xxu:H (3.35) BS01 rna ? GO:0003735 ... B9PNL1 28809395
    427772 5xxu:I (3.35) BS01 rna ? GO:0003735 ... B6KGK3 28809395
    427773 5xxu:J (3.35) BS01 rna ? GO:0003723 ... B9PQU8 28809395
    427774 5xxu:K (3.35) BS01 rna ? GO:0003723 ... B9PX63 28809395
    427775 5xxu:L (3.35) BS01 rna ? GO:0003735 ... B9PMU7 28809395
    427776 5xxu:N (3.35) BS01 rna ? GO:0003735 ... A0A125YSG6 28809395
    427777 5xxu:O (3.35) BS01 rna ? GO:0003735 ... A0A125YXW4 28809395
    427778 5xxu:P (3.35) BS01 rna ? GO:0000028 ... B9PSN8 28809395
    427779 5xxu:Q (3.35) BS01 rna ? GO:0003735 ... B6KC70 28809395
    427780 5xxu:R (3.35) BS01 rna ? GO:0003735 ... B9PXH2 28809395
    427781 5xxu:S (3.35) BS01 rna ? GO:0003676 ... B9PMB3 28809395
    427782 5xxu:T (3.35) BS01 rna ? GO:0003735 ... A0A125YMR9 28809395
    427783 5xxu:U (3.35) BS01 rna ? GO:0003735 ... B6KQG9 28809395
    427784 5xxu:V (3.35) BS01 rna ? GO:0003735 ... A0A125YS47 28809395
    427785 5xxu:W (3.35) BS01 rna ? GO:0003735 ... A0A125YJX3 28809395
    427786 5xxu:X (3.35) BS01 rna ? GO:0003735 ... B9PHL8 28809395
    427787 5xxu:Y (3.35) BS01 rna ? GO:0003735 ... A0A125YKH1 28809395
    427788 5xxu:Z (3.35) BS01 rna ? GO:0005840 ... S7V273 28809395
    427789 5xxu:a (3.35) BS01 rna ? GO:0003729 ... B9PP49 28809395
    427790 5xxu:b (3.35) BS01 rna ? GO:0003735 ... A0A125YVX8 28809395
    427791 5xxu:c (3.35) BS01 rna ? GO:0003735 ... A0A125YJ29 28809395
    427792 5xxu:d (3.35) BS01 rna ? GO:0002181 ... A0A0F7UYM7 28809395
    427793 5xxu:e (3.35) BS01 rna ? GO:0003735 ... B9PTA0 28809395
    427794 5xxu:f (3.35) BS01 rna ? GO:0003735 ... B9PQ37 28809395
    427795 5xxu:m (3.35) BS01 rna ? GO:0003735 ... F0JB24 28809395
    427796 5xxv:A (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427797 5xxv:B (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427798 5xxv:B (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427799 5xxv:C (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427800 5xxv:D (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).