SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42601 1ptr:A (2.2) BS03 PRB 2.7.10.2
    2.7.11.13
    N/A P28867 7781068
    42602 1ptt:A (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 7540771
    42603 1ptu:A (2.6) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 7540771
    42604 1ptv:A (2.3) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 7540771
    42605 1ptw:A (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    42606 1ptw:A (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    42607 1ptw:B (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    42608 1ptw:B (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    42609 1ptw:C (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    42610 1ptw:C (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    42611 1ptw:D (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    42612 1ptw:D (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    42613 1pty:A (1.85) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    42614 1pty:A (1.85) BS02 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    42615 1ptz:A (1.8) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42616 1ptz:A (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42617 1ptz:B (1.8) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42618 1ptz:B (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42619 1pu0:A (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42620 1pu0:A (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42621 1pu0:B (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42622 1pu0:B (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42623 1pu0:C (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42624 1pu0:C (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42625 1pu0:D (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42626 1pu0:D (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42627 1pu0:E (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42628 1pu0:E (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42629 1pu0:F (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42630 1pu0:F (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42631 1pu0:G (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42632 1pu0:G (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42633 1pu0:H (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42634 1pu0:H (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42635 1pu0:I (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42636 1pu0:I (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42637 1pu0:J (1.7) BS01 CU1 1.15.1.1 GO:0000303 ... P00441 12963370
    42638 1pu0:J (1.7) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12963370
    42639 1pu4:A (3.2) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    42640 1pu4:A (3.2) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    42641 1pu4:A (3.2) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    42642 1pu4:B (3.2) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    42643 1pu4:B (3.2) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    42644 1pu4:B (3.2) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    42645 1pu7:A (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    42646 1pu7:B (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    42647 1pu8:A (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    42648 1pu8:B (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    42649 1pu9:A (2.3) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 14536085
    42650 1pu9:A (2.3) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    42651 1pua:A (2.3) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 14536085
    42652 1pua:A (2.3) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    42653 1pud:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 8654383
    42654 1pue:E (2.1) BS01 dna ? GO:0003700 ... P17433 8602247
    42655 1pue:E (2.1) BS02 dna ? GO:0003700 ... P17433 8602247
    42656 1pue:F (2.1) BS01 dna ? GO:0003700 ... P17433 8602247
    42657 1pue:F (2.1) BS02 dna ? GO:0003700 ... P17433 8602247
    42658 1puf:A (1.9) BS01 dna ? GO:0000981 ... P09631 12923056
    42659 1puf:A (1.9) BS02 dna ? GO:0000981 ... P09631 12923056
    42660 1puf:B (1.9) BS01 dna ? GO:0000981 ... P40424 12923056
    42661 1puf:B (1.9) BS02 dna ? GO:0000981 ... P40424 12923056
    42662 1puj:A (2.0) BS01 GNP ? GO:0003924 ... O31743 N/A
    42663 1pum:B (2.3) BS01 GAL 3.2.2.22 N/A P81446 16508080
    42664 1pum:B (2.3) BS02 GAL 3.2.2.22 N/A P81446 16508080
    42665 1pun:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    42666 1pun:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141
    42667 1puq:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    42668 1puq:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141
    42669 1pus:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    42670 1pus:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141
    42671 1put:A (-1.00) BS01 FES ? GO:0005515 ... P00259 8204575
    42672 1puu:B (2.3) BS01 GAL 3.2.2.22 N/A P81446 16508080
    42673 1puu:B (2.3) BS02 GAL 3.2.2.22 N/A P81446 16508080
    42674 1pv4:A (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42675 1pv4:C (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42676 1pv4:D (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42677 1pv4:E (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42678 1pv4:F (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42679 1pv8:A (2.2) BS01 PB1 4.2.1.24 GO:0001666 ... P13716 12897770
    42680 1pv9:A (2.0) BS01 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    42681 1pv9:A (2.0) BS02 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    42682 1pv9:B (2.0) BS01 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    42683 1pv9:B (2.0) BS02 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    42684 1pva:A (1.65) BS01 CA ? GO:0005509 ... P02628 N/A
    42685 1pva:A (1.65) BS02 CA ? GO:0005509 ... P02628 N/A
    42686 1pva:B (1.65) BS01 CA ? GO:0005509 ... P02628 N/A
    42687 1pva:B (1.65) BS02 CA ? GO:0005509 ... P02628 N/A
    42688 1pvb:A (1.75) BS01 CA ? GO:0005509 ... P02619 15299738
    42689 1pvb:A (1.75) BS02 CA ? GO:0005509 ... P02619 15299738
    42690 1pvc:4 (2.4) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03302 N/A
    42691 1pvd:A (2.3) BS01 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    42692 1pvd:A (2.3) BS02 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    42693 1pvd:A (2.3) BS03 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    42694 1pvd:B (2.3) BS01 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    42695 1pvd:B (2.3) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    42696 1pvd:B (2.3) BS03 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    42697 1pvf:A (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 N/A
    42698 1pvf:A (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 N/A
    42699 1pvf:B (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 N/A
    42700 1pvf:B (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 N/A
    42701 1pvg:A (1.8) BS01 ANP 5.6.2.2 GO:0003677 ... P06786 12963818
    42702 1pvg:B (1.8) BS01 ANP 5.6.2.2 GO:0003677 ... P06786 12963818
    42703 1pvi:A (2.6) BS01 dna 3.1.21.4 GO:0009036 ... P23657 8076590
    42704 1pvi:A (2.6) BS02 dna 3.1.21.4 GO:0009036 ... P23657 8076590
    42705 1pvi:B (2.6) BS01 dna 3.1.21.4 GO:0009036 ... P23657 8076590
    42706 1pvi:B (2.6) BS02 dna 3.1.21.4 GO:0009036 ... P23657 8076590
    42707 1pvj:A (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    42708 1pvj:B (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    42709 1pvj:C (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    42710 1pvj:D (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    42711 1pvm:A (1.5) BS01 HG ? N/A Q9HLD9 18021800
    42712 1pvm:B (1.5) BS01 HG ? N/A Q9HLD9 18021800
    42713 1pvn:A (2.0) BS01 MZP 1.1.1.205 GO:0003824 ... P50097 12549902 MOAD: Ki=0.15nM
    42714 1pvn:B (2.0) BS01 MZP 1.1.1.205 GO:0003824 ... P50097 12549902 MOAD: Ki=0.15nM
    42715 1pvn:C (2.0) BS01 MZP 1.1.1.205 GO:0003824 ... P50097 12549902 MOAD: Ki=0.15nM
    42716 1pvn:D (2.0) BS01 MZP 1.1.1.205 GO:0003824 ... P50097 12549902 MOAD: Ki=0.15nM
    42717 1pvo:A (3.0) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42718 1pvo:A (3.0) BS02 ANP 3.6.4.- GO:0003676 ... P0AG30 12859904
    42719 1pvo:B (3.0) BS01 ANP 3.6.4.- GO:0003676 ... P0AG30 12859904
    42720 1pvo:C (3.0) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42721 1pvo:C (3.0) BS02 ANP 3.6.4.- GO:0003676 ... P0AG30 12859904
    42722 1pvo:D (3.0) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42723 1pvo:D (3.0) BS02 ANP 3.6.4.- GO:0003676 ... P0AG30 12859904
    42724 1pvo:E (3.0) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42725 1pvo:E (3.0) BS02 ANP 3.6.4.- GO:0003676 ... P0AG30 12859904
    42726 1pvo:F (3.0) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 12859904
    42727 1pvo:F (3.0) BS02 ANP 3.6.4.- GO:0003676 ... P0AG30 12859904
    42728 1pvp:A (2.35) BS01 dna ? GO:0003677 ... P06956 14652076
    42729 1pvp:B (2.35) BS01 dna ? GO:0003677 ... P06956 14652076
    42730 1pvp:B (2.35) BS02 dna ? GO:0003677 ... P06956 14652076
    42731 1pvq:A (2.75) BS01 dna ? GO:0003677 ... P06956 14652076
    42732 1pvq:B (2.75) BS01 dna ? GO:0003677 ... P06956 14652076
    42733 1pvq:B (2.75) BS02 dna ? GO:0003677 ... P06956 14652076
    42734 1pvr:A (2.65) BS01 dna ? GO:0003677 ... P06956 14652076
    42735 1pvr:B (2.65) BS01 dna ? GO:0003677 ... P06956 14652076
    42736 1pvr:B (2.65) BS02 dna ? GO:0003677 ... P06956 14652076
    42737 1pvs:A (2.4) BS01 7HP 3.2.2.21 GO:0003824 ... P04395 12009927
    42738 1pvs:B (2.4) BS01 7HP 3.2.2.21 GO:0003824 ... P04395 12009927
    42739 1pvw:A (2.45) BS01 ZN 4.1.99.12 GO:0000287 ... Q60364 12904291
    42740 1pvw:A (2.45) BS02 PO4 4.1.99.12 GO:0000287 ... Q60364 12904291
    42741 1pvw:B (2.45) BS01 ZN 4.1.99.12 GO:0000287 ... Q60364 12904291
    42742 1pvy:A (1.7) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 12904291
    42743 1pvy:A (1.7) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 12904291
    42744 1pvy:A (1.7) BS03 CA 4.1.99.12 GO:0000287 ... Q60364 12904291
    42745 1pvy:A (1.7) BS04 CA 4.1.99.12 GO:0000287 ... Q60364 12904291
    42746 1pvy:A (1.7) BS05 CA 4.1.99.12 GO:0000287 ... Q60364 12904291
    42747 1pvy:B (1.7) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 12904291
    42748 1pvy:B (1.7) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 12904291
    42749 1pw1:A (1.2) BS01 HEL 3.4.16.4 GO:0005576 ... P15555 15581896
    42750 1pw6:A (2.6) BS01 FRB ? GO:0002366 ... P60568 14664558 BindingDB: Kd=55nM
    42751 1pw6:B (2.6) BS01 FRB ? GO:0002366 ... P60568 14664558 BindingDB: Kd=55nM
    42752 1pw7:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    42753 1pw7:A (2.0) BS02 RAB 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    42754 1pw7:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    42755 1pw7:B (2.0) BS02 RAB 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    42756 1pw7:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    42757 1pw7:C (2.0) BS02 RAB 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    42758 1pw8:A (1.3) BS01 H2A 3.4.16.4 GO:0005576 ... P15555 15581896
    42759 1pw9:A (1.6) BS01 CA ? N/A P35247 12888356
    42760 1pw9:A (1.6) BS02 CA ? N/A P35247 12888356
    42761 1pw9:A (1.6) BS03 CA ? N/A P35247 12888356
    42762 1pw9:B (1.6) BS01 CA ? N/A P35247 12888356
    42763 1pw9:B (1.6) BS02 CA ? N/A P35247 12888356
    42764 1pw9:B (1.6) BS03 CA ? N/A P35247 12888356
    42765 1pw9:C (1.6) BS01 CA ? N/A P35247 12888356
    42766 1pw9:C (1.6) BS02 CA ? N/A P35247 12888356
    42767 1pw9:C (1.6) BS03 CA ? N/A P35247 12888356
    42768 1pwb:A (1.4) BS01 GLC ? N/A P35247 12888356
    42769 1pwb:A (1.4) BS02 CA ? N/A P35247 12888356
    42770 1pwb:A (1.4) BS03 CA ? N/A P35247 12888356
    42771 1pwb:A (1.4) BS04 CA ? N/A P35247 12888356
    42772 1pwb:B (1.4) BS01 GLC ? N/A P35247 12888356
    42773 1pwb:B (1.4) BS02 CA ? N/A P35247 12888356
    42774 1pwb:B (1.4) BS03 CA ? N/A P35247 12888356
    42775 1pwb:B (1.4) BS04 CA ? N/A P35247 12888356
    42776 1pwb:C (1.4) BS01 GLC ? N/A P35247 12888356
    42777 1pwb:C (1.4) BS02 CA ? N/A P35247 12888356
    42778 1pwb:C (1.4) BS03 CA ? N/A P35247 12888356
    42779 1pwb:C (1.4) BS04 CA ? N/A P35247 12888356
    42780 1pwc:A (1.1) BS01 PNM 3.4.16.4 GO:0005576 ... P15555 15581896
    42781 1pwd:A (1.2) BS01 0MU 3.4.16.4 GO:0005576 ... P15555 15581896
    42782 1pwg:A (1.074) BS01 HE0 3.4.16.4 GO:0005576 ... P15555 15581896
    42783 1pwh:A (2.6) BS01 PLV 4.3.1.17
    4.3.1.19
    GO:0003941 ... P09367 14596599
    42784 1pwh:B (2.6) BS01 PLV 4.3.1.17
    4.3.1.19
    GO:0003941 ... P09367 14596599
    42785 1pwh:C (2.6) BS01 PLV 4.3.1.17
    4.3.1.19
    GO:0003941 ... P09367 14596599
    42786 1pwh:D (2.6) BS01 PLV 4.3.1.17
    4.3.1.19
    GO:0003941 ... P09367 14596599
    42787 1pwl:A (1.1) BS01 BFI 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15146479 BindingDB: IC50=25nM, Kd=5.5nM
    42788 1pwl:A (1.1) BS02 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15146479
    42789 1pwm:A (0.92) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15146479
    42790 1pwm:A (0.92) BS02 FID 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15146479 BindingDB: IC50=35nM, Kd=16nM
    42791 1pwp:A (2.9) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 14718925
    42792 1pwp:A (2.9) BS02 NSC 3.4.24.83 GO:0003824 ... P15917 14718925 BindingDB: Ki=500nM, IC50=3200nM
    42793 1pwp:B (2.9) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 14718925
    42794 1pwp:B (2.9) BS02 NSC 3.4.24.83 GO:0003824 ... P15917 14718925 BindingDB: Ki=500nM, IC50=3200nM
    42795 1pwq:A (3.52) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 14718924
    42796 1pwq:A (3.52) BS02 SD2 3.4.24.83 GO:0003824 ... P15917 14718924
    42797 1pwq:B (3.52) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 14718924
    42798 1pwq:B (3.52) BS02 SD2 3.4.24.83 GO:0003824 ... P15917 14718924
    42799 1pwu:A (2.7) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 14718924
    42800 1pwu:A (2.7) BS02 GM6 3.4.24.83 GO:0003824 ... P15917 14718924

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).