SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427801 5xxv:D (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427802 5xxv:E (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427803 5xxv:F (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427804 5xxv:F (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427805 5xxv:G (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427806 5xxv:H (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427807 5xxv:H (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427808 5xxv:I (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427809 5xxv:J (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427810 5xxv:J (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427811 5xxv:K (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427812 5xxv:L (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427813 5xxv:L (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427814 5xxv:M (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427815 5xxv:N (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427816 5xxv:N (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427817 5xxv:O (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427818 5xxv:P (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427819 5xxv:P (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427820 5xxv:Q (6.46) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427821 5xxv:R (6.46) BS01 GTP ? GO:0000226 ... P02554 30297389
    427822 5xxv:R (6.46) BS02 GDP ? GO:0000226 ... P02554 30297389
    427823 5xxw:A (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427824 5xxw:B (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427825 5xxw:B (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427826 5xxw:C (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427827 5xxw:D (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427828 5xxw:D (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427829 5xxw:E (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427830 5xxw:F (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427831 5xxw:F (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427832 5xxw:G (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427833 5xxw:H (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427834 5xxw:H (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427835 5xxw:I (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427836 5xxw:J (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427837 5xxw:J (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427838 5xxw:K (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427839 5xxw:L (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427840 5xxw:L (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427841 5xxw:M (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427842 5xxw:N (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427843 5xxw:N (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427844 5xxw:O (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427845 5xxw:P (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427846 5xxw:P (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427847 5xxw:Q (6.0) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427848 5xxw:R (6.0) BS01 GTP ? GO:0000226 ... P02554 30297389
    427849 5xxw:R (6.0) BS02 GDP ? GO:0000226 ... P02554 30297389
    427850 5xxx:A (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427851 5xxx:B (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427852 5xxx:B (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427853 5xxx:C (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427854 5xxx:D (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427855 5xxx:D (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427856 5xxx:E (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427857 5xxx:F (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427858 5xxx:F (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427859 5xxx:G (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427860 5xxx:H (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427861 5xxx:H (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427862 5xxx:I (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427863 5xxx:J (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427864 5xxx:J (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427865 5xxx:K (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427866 5xxx:L (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427867 5xxx:L (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427868 5xxx:M (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427869 5xxx:N (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427870 5xxx:N (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427871 5xxx:O (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427872 5xxx:P (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427873 5xxx:P (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427874 5xxx:Q (6.43) BS01 GTP 3.6.5.- GO:0000226 ... P02550 30297389
    427875 5xxx:R (6.43) BS01 GTP ? GO:0000226 ... P02554 30297389
    427876 5xxx:R (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    427877 5xxz:A (3.085) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427878 5xxz:A (3.085) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427879 5xxz:A (3.085) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427880 5xxz:A (3.085) BS04 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427881 5xxz:B (3.085) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427882 5xxz:B (3.085) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427883 5xxz:B (3.085) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427884 5xy1:A (2.7) BS01 8H0 2.7.10.2 GO:0004672 ... P07948 N/A
    427885 5xy3:A (3.2) BS01 rna ? GO:0002181 ... A2E6Z8 28809395
    427886 5xy3:B (3.2) BS01 rna ? GO:0003723 ... A2DD62 28809395
    427887 5xy3:C (3.2) BS01 rna ? GO:0003723 ... A2E4D0 28809395
    427888 5xy3:C (3.2) BS02 rna ? GO:0003723 ... A2E4D0 28809395
    427889 5xy3:D (3.2) BS01 rna ? GO:0000027 ... A2DNM5 28809395
    427890 5xy3:D (3.2) BS02 rna ? GO:0000027 ... A2DNM5 28809395
    427891 5xy3:E (3.2) BS01 rna ? GO:0002181 ... A2FXW1 28809395
    427892 5xy3:F (3.2) BS01 rna ? GO:0000463 ... A2F592 28809395
    427893 5xy3:F (3.2) BS02 rna ? GO:0000463 ... A2F592 28809395
    427894 5xy3:G (3.2) BS01 rna ? GO:0000470 ... A2ET60 28809395
    427895 5xy3:G (3.2) BS02 rna ? GO:0000470 ... A2ET60 28809395
    427896 5xy3:H (3.2) BS01 rna ? GO:0002181 ... A2DDT1 28809395
    427897 5xy3:I (3.2) BS01 rna ? GO:0003735 ... A2FVZ6 28809395
    427898 5xy3:I (3.2) BS02 rna ? GO:0003735 ... A2FVZ6 28809395
    427899 5xy3:J (3.2) BS01 rna ? GO:0003723 ... A2E7L8 28809395
    427900 5xy3:J (3.2) BS02 rna ? GO:0003723 ... A2E7L8 28809395
    427901 5xy3:L (3.2) BS01 rna ? GO:0003723 ... A2G4E1 28809395
    427902 5xy3:L (3.2) BS02 rna ? GO:0003723 ... A2G4E1 28809395
    427903 5xy3:M (3.2) BS01 rna ? GO:0003723 ... A2DZ49 28809395
    427904 5xy3:N (3.2) BS01 rna ? GO:0002181 ... A2ECR7 28809395
    427905 5xy3:N (3.2) BS02 rna ? GO:0002181 ... A2ECR7 28809395
    427906 5xy3:O (3.2) BS01 rna ? GO:0003729 ... A2DZ26 28809395
    427907 5xy3:P (3.2) BS01 rna ? GO:0002181 ... A2DM53 28809395
    427908 5xy3:P (3.2) BS02 rna ? GO:0002181 ... A2DM53 28809395
    427909 5xy3:Q (3.2) BS01 rna ? GO:0003723 ... A2D7Q5 28809395
    427910 5xy3:R (3.2) BS01 rna ? GO:0003723 ... A2D8G1 28809395
    427911 5xy3:S (3.2) BS01 rna ? GO:0002181 ... A2EP03 28809395
    427912 5xy3:S (3.2) BS02 rna ? GO:0002181 ... A2EP03 28809395
    427913 5xy3:T (3.2) BS01 rna ? GO:0003735 ... A2F2S5 28809395
    427914 5xy3:T (3.2) BS02 rna ? GO:0003735 ... A2F2S5 28809395
    427915 5xy3:U (3.2) BS01 rna ? GO:0002181 ... A2DNV5 28809395
    427916 5xy3:V (3.2) BS01 rna ? GO:0003735 ... A2DP51 28809395
    427917 5xy3:W (3.2) BS01 rna ? GO:0002181 ... A2DJQ1 28809395
    427918 5xy3:X (3.2) BS01 rna ? GO:0003735 ... A2DUV8 28809395
    427919 5xy3:X (3.2) BS02 rna ? GO:0003735 ... A2DUV8 28809395
    427920 5xy3:Y (3.2) BS01 rna ? GO:0002181 ... A2DKF2 28809395
    427921 5xy3:Y (3.2) BS02 rna ? GO:0002181 ... A2DKF2 28809395
    427922 5xy3:Z (3.2) BS01 rna ? GO:0003735 ... A2DNC1 28809395
    427923 5xy3:a (3.2) BS01 rna ? GO:0003735 ... A2DHU7 28809395
    427924 5xy3:b (3.2) BS01 rna ? GO:0002181 ... A2DM33 28809395
    427925 5xy3:c (3.2) BS01 rna ? GO:0003723 ... A2E6Z9 28809395
    427926 5xy3:d (3.2) BS01 rna ? GO:0002181 ... A2D9N8 28809395
    427927 5xy3:e (3.2) BS01 rna ? GO:0003735 ... A2F2J0 28809395
    427928 5xy3:f (3.2) BS01 rna ? GO:0002181 ... A2DSF3 28809395
    427929 5xy3:g (3.2) BS01 rna ? GO:0003735 ... A2FWA1 28809395
    427930 5xy3:h (3.2) BS01 rna ? GO:0000463 ... A2E6R2 28809395
    427931 5xy3:h (3.2) BS02 rna ? GO:0000463 ... A2E6R2 28809395
    427932 5xy3:i (3.2) BS01 rna ? GO:0002181 ... A2EXW7 28809395
    427933 5xy3:j (3.2) BS01 rna ? GO:0003723 ... A2F8Y8 28809395
    427934 5xy3:j (3.2) BS02 rna ? GO:0003723 ... A2F8Y8 28809395
    427935 5xy3:k (3.2) BS01 rna ? GO:0003735 ... A2FFH9 28809395
    427936 5xy3:l (3.2) BS01 rna ? GO:0003735 ... A2D9N4 28809395
    427937 5xy3:l (3.2) BS02 rna ? GO:0003735 ... A2D9N4 28809395
    427938 5xy3:m (3.2) BS01 rna ? GO:0003735 ... A2DGL5 28809395
    427939 5xy3:o (3.2) BS01 rna ? GO:0003735 ... A2DAI6 28809395
    427940 5xy3:p (3.2) BS01 rna ? GO:0003735 ... A2DEM7 28809395
    427941 5xy4:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427942 5xy4:A (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427943 5xy4:A (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427944 5xy4:B (1.8) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427945 5xy4:B (1.8) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427946 5xy4:B (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427947 5xy4:B (1.8) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427948 5xy4:C (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427949 5xy4:C (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427950 5xy4:C (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427951 5xy4:D (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427952 5xy4:D (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    427953 5xy9:A (2.303) BS01 peptide ? GO:0000122 ... P63104 N/A
    427954 5xy9:B (2.303) BS01 peptide ? GO:0000122 ... P63104 N/A
    427955 5xya:A (3.0) BS01 AES 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427956 5xya:A (3.0) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427957 5xya:A (3.0) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427958 5xya:A (3.0) BS04 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427959 5xya:A (3.0) BS05 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    427960 5xyf:A (2.202) BS01 peptide ? GO:0016233 ... Q9BSI4 29160297
    427961 5xyf:A (2.202) BS02 peptide ? GO:0016233 ... Q9BSI4 29160297
    427962 5xyi:A (3.35) BS01 rna ? GO:0000028 ... A2EFE7 28809395
    427963 5xyi:B (3.35) BS01 rna ? GO:0003735 ... A2G9Z8 28809395
    427964 5xyi:C (3.35) BS01 rna ? GO:0003723 ... A2EHK3 28809395
    427965 5xyi:D (3.35) BS01 rna ? GO:0003723 ... A2DIM3 28809395
    427966 5xyi:E (3.35) BS01 rna ? GO:0003723 ... A2FC75 28809395
    427967 5xyi:F (3.35) BS01 rna ? GO:0000028 ... A2E4S6 28809395
    427968 5xyi:H (3.35) BS01 rna ? GO:0003735 ... A2G5X6 28809395
    427969 5xyi:I (3.35) BS01 rna ? GO:0000462 ... A2E1L5 28809395
    427970 5xyi:J (3.35) BS01 rna ? GO:0003723 ... A2DNY3 28809395
    427971 5xyi:K (3.35) BS01 rna ? GO:0003723 ... A2EBA2 28809395
    427972 5xyi:L (3.35) BS01 rna ? GO:0003735 ... A2DHU8 28809395
    427973 5xyi:M (3.35) BS01 rna ? GO:0003735 ... A2FA40 28809395
    427974 5xyi:N (3.35) BS01 rna ? GO:0003735 ... A2D9L2 28809395
    427975 5xyi:O (3.35) BS01 rna ? GO:0003735 ... Q76KS8 28809395
    427976 5xyi:P (3.35) BS01 rna ? GO:0000028 ... A2DVD8 28809395
    427977 5xyi:Q (3.35) BS01 rna ? GO:0000462 ... A2D919 28809395
    427978 5xyi:R (3.35) BS01 rna ? GO:0003735 ... A2DPS3 28809395
    427979 5xyi:S (3.35) BS01 rna ? GO:0003676 ... A2DTR8 28809395
    427980 5xyi:T (3.35) BS01 rna ? GO:0000028 ... A2EG54 28809395
    427981 5xyi:U (3.35) BS01 rna ? GO:0003735 ... A2FDE0 28809395
    427982 5xyi:W (3.35) BS01 rna ? GO:0003735 ... A2DLW4 28809395
    427983 5xyi:X (3.35) BS01 rna ? GO:0003735 ... A2D895 28809395
    427984 5xyi:Y (3.35) BS01 rna ? GO:0003735 ... A2F0H5 28809395
    427985 5xyi:Z (3.35) BS01 rna ? GO:0003735 ... A2ER97 28809395
    427986 5xyi:a (3.35) BS01 rna ? GO:0003729 ... A2DST7 28809395
    427987 5xyi:b (3.35) BS01 rna ? GO:0000028 ... A2FBZ2 28809395
    427988 5xyi:c (3.35) BS01 rna ? GO:0000028 ... A2DQN8 28809395
    427989 5xyi:d (3.35) BS01 rna ? GO:0002181 ... A2DYA8 28809395
    427990 5xyi:e (3.35) BS01 rna ? GO:0003735 ... A2FHY5 28809395
    427991 5xyi:g (3.35) BS01 rna ? GO:0005080 ... A2ELV7 28809395
    427992 5xyk:E (2.57) BS01 ARG ? GO:0000166 ... E8XCX6 N/A
    427993 5xyk:E (2.57) BS02 MN ? GO:0000166 ... E8XCX6 N/A
    427994 5xyk:E (2.57) BS03 UDP ? GO:0000166 ... E8XCX6 N/A
    427995 5xym:0 (3.08) BS01 rna ? GO:0003735 ... A0R3I9 28875450
    427996 5xym:1 (3.08) BS01 rna ? GO:0003735 ... A0R551 28875450
    427997 5xym:2 (3.08) BS01 rna ? GO:0003735 ... A0R7K0 28875450
    427998 5xym:3 (3.08) BS01 rna ? GO:0003735 ... A0QYU7 28875450
    427999 5xym:4 (3.08) BS01 rna ? GO:0003735 ... A0QSL4 28875450
    428000 5xym:C (3.08) BS01 rna ? GO:0002181 ... A0QSD4 28875450

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).