SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    428001 5xym:D (3.08) BS01 rna ? GO:0003735 ... A0QSD1 28875450
    428002 5xym:E (3.08) BS01 rna ? GO:0003735 ... A0QSD2 28875450
    428003 5xym:F (3.08) BS01 rna ? GO:0000049 ... A0QSG1 28875450
    428004 5xym:F (3.08) BS02 rna ? GO:0000049 ... A0QSG1 28875450
    428005 5xym:G (3.08) BS01 rna ? GO:0002181 ... A0QSG4 28875450
    428006 5xym:H (3.08) BS01 rna ? GO:0003735 ... A0R7F6 28875450
    428007 5xym:J (3.08) BS01 rna ? GO:0003729 ... A0QSP8 28875450
    428008 5xym:K (3.08) BS01 rna ? GO:0003735 ... A0QSF9 28875450
    428009 5xym:L (3.08) BS01 rna ? GO:0003735 ... A0QSG8 28875450
    428010 5xym:M (3.08) BS01 rna ? GO:0000049 ... A0QSD8 28875450
    428011 5xym:N (3.08) BS01 rna ? GO:0003735 ... A0QSL9 28875450
    428012 5xym:O (3.08) BS01 rna ? GO:0003735 ... A0QSG5 28875450
    428013 5xym:O (3.08) BS02 rna ? GO:0003735 ... A0QSG5 28875450
    428014 5xym:P (3.08) BS01 rna ? GO:0003735 ... A0QV42 28875450
    428015 5xym:Q (3.08) BS01 rna ? GO:0000027 ... A0QYU6 28875450
    428016 5xym:R (3.08) BS01 rna ? GO:0003723 ... A0R151 28875450
    428017 5xym:S (3.08) BS01 rna ? GO:0003735 ... A0QSD6 28875450
    428018 5xym:T (3.08) BS01 rna ? GO:0003735 ... A0QSD3 28875450
    428019 5xym:U (3.08) BS01 rna ? GO:0003723 ... A0QSG0 28875450
    428020 5xym:V (3.08) BS01 rna ? GO:0003723 ... A0R3D2 28875450
    428021 5xym:V (3.08) BS02 rna ? GO:0003723 ... A0R3D2 28875450
    428022 5xym:W (3.08) BS01 rna ? GO:0003735 ... A0R150 28875450
    428023 5xym:W (3.08) BS02 rna ? GO:0003735 ... A0R150 28875450
    428024 5xym:X (3.08) BS01 rna ? GO:0003735 ... A0QV03 28875450
    428025 5xym:Y (3.08) BS01 rna ? GO:0003735 ... A0QSD9 28875450
    428026 5xym:Z (3.08) BS01 rna ? GO:0003735 ... A0QSG7 28875450
    428027 5xym:Z (3.08) BS02 rna ? GO:0003735 ... A0QSG7 28875450
    428028 5xyn:D (3.3) BS01 ZN ? GO:0000725 ... P38957 29069504
    428029 5xyr:A (2.8) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    428030 5xyr:A (2.8) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    428031 5xyr:A (2.8) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    428032 5xyu:C (3.45) BS01 rna ? GO:0003676 ... A0QSD7 28875450
    428033 5xyu:D (3.45) BS01 rna ? GO:0003723 ... A0QSL7 28875450
    428034 5xyu:E (3.45) BS01 rna ? GO:0003723 ... A0QSG6 28875450
    428035 5xyu:F (3.45) BS01 rna ? GO:0003735 ... A0R7F9 28875450
    428036 5xyu:G (3.45) BS01 rna ? GO:0000049 ... A0QS97 28875450
    428037 5xyu:H (3.45) BS01 rna ? GO:0003735 ... A0QSG3 28875450
    428038 5xyu:I (3.45) BS01 rna ? GO:0003723 ... A0QSP9 28875450
    428039 5xyu:J (3.45) BS01 rna ? GO:0000049 ... A0QSD0 28875450
    428040 5xyu:K (3.45) BS01 rna ? GO:0003735 ... A0QSL6 28875450
    428041 5xyu:L (3.45) BS01 rna ? GO:0000049 ... A0QS96 28875450
    428042 5xyu:M (3.45) BS01 rna ? GO:0000049 ... A0QSL5 28875450
    428043 5xyu:N (3.45) BS01 rna ? GO:0003735 ... A0QSG2 28875450
    428044 5xyu:O (3.45) BS01 rna ? GO:0003735 ... A0QVQ3 28875450
    428045 5xyu:P (3.45) BS01 rna ? GO:0003735 ... A0QV37 28875450
    428046 5xyu:Q (3.45) BS01 rna ? GO:0003735 ... A0QSE0 28875450
    428047 5xyu:R (3.45) BS01 rna ? GO:0003735 ... A0R7F7 28875450
    428048 5xyu:S (3.45) BS01 rna ? GO:0000028 ... A0QSD5 28875450
    428049 5xyu:T (3.45) BS01 rna ? GO:0003723 ... A0R102 28875450
    428050 5xyx:A (2.61) BS01 FTZ 2.7.11.24 GO:0000077 ... Q16539 28945083 BindingDB: IC50=14445nM
    428051 5xyy:A (1.7) BS01 P0F 2.7.11.24 GO:0000077 ... Q16539 28945083 MOAD: ic50=9.221uM
    428052 5xyz:A (2.64) BS01 GYL 2.7.10.2 GO:0004672 ... Q06187 28945083
    428053 5xyz:B (2.64) BS01 GYL 2.7.10.2 GO:0004672 ... Q06187 28945083
    428054 5xz2:A (1.75) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... Q68EH2 29167503
    428055 5xz2:B (1.75) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... Q68EH2 29167503
    428056 5xz6:A (2.7) BS01 ANP 2.7.1.11 GO:0003872 ... Q2FXM8 29940104
    428057 5xz7:A (1.6) BS01 F6P 2.7.1.11 GO:0003872 ... P99165 29940104
    428058 5xz8:A (1.95) BS01 F6P 2.7.1.11 GO:0003872 ... Q2FXM8 29940104
    428059 5xz8:A (1.95) BS02 ANP 2.7.1.11 GO:0003872 ... Q2FXM8 29940104
    428060 5xz9:A (2.0) BS01 ATP 2.7.1.11 GO:0003872 ... P99165 29940104
    428061 5xza:A (1.9) BS01 ADP 2.7.1.11 GO:0003872 ... P99165 29940104
    428062 5xzb:A (2.13) BS01 dna 2.7.7.86 N/A Q8C6L5 28963528
    428063 5xzb:A (2.13) BS02 dna 2.7.7.86 N/A Q8C6L5 28963528
    428064 5xzb:A (2.13) BS03 ZN 2.7.7.86 N/A Q8C6L5 28963528
    428065 5xzb:A (2.13) BS04 A9Y 2.7.7.86 N/A Q8C6L5 28963528
    428066 5xze:A (2.177) BS01 dna 2.7.7.86 N/A Q8C6L5 28963528
    428067 5xze:A (2.177) BS02 dna 2.7.7.86 N/A Q8C6L5 28963528
    428068 5xze:A (2.177) BS03 ZN 2.7.7.86 N/A Q8C6L5 28963528
    428069 5xze:A (2.177) BS04 AE7 2.7.7.86 N/A Q8C6L5 28963528
    428070 5xzf:A (2.1) BS01 peptide ? GO:0003677 ... P13053 29989817
    428071 5xzf:A (2.1) BS02 8J0 ? GO:0003677 ... P13053 29989817 MOAD: ic50=0.24nM
    428072 5xzg:A (1.828) BS01 dna 2.7.7.86 N/A Q8C6L5 28963528
    428073 5xzg:A (1.828) BS02 dna 2.7.7.86 N/A Q8C6L5 28963528
    428074 5xzg:A (1.828) BS03 ZN 2.7.7.86 N/A Q8C6L5 28963528
    428075 5xzg:A (1.828) BS04 AEV 2.7.7.86 N/A Q8C6L5 28963528
    428076 5xzh:A (2.0) BS01 peptide ? GO:0003677 ... P13053 29989817
    428077 5xzh:A (2.0) BS02 8J3 ? GO:0003677 ... P13053 29989817 MOAD: ic50=3.13nM
    428078 5xzi:A (2.65) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    428079 5xzj:A (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    428080 5xzj:A (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    428081 5xzj:A (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    428082 5xzj:A (1.98) BS04 ZN ? GO:0005506 ... P0ABE7 28992705
    428083 5xzj:B (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    428084 5xzj:B (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    428085 5xzj:B (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    428086 5xzj:C (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    428087 5xzj:C (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    428088 5xzj:C (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    428089 5xzj:D (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    428090 5xzj:D (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    428091 5xzj:D (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    428092 5xzm:A (1.41) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428093 5xzm:A (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428094 5xzm:A (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428095 5xzm:B (1.41) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428096 5xzm:B (1.41) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428097 5xzm:B (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428098 5xzm:B (1.41) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428099 5xzm:C (1.41) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428100 5xzm:C (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428101 5xzm:C (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428102 5xzm:D (1.41) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428103 5xzm:D (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428104 5xzm:D (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428105 5xzn:A (1.47) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428106 5xzn:A (1.47) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428107 5xzn:A (1.47) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428108 5xzn:A (1.47) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428109 5xzn:B (1.47) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428110 5xzn:B (1.47) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428111 5xzn:B (1.47) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428112 5xzn:B (1.47) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428113 5xzn:C (1.47) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428114 5xzn:D (1.47) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428115 5xzn:D (1.47) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    428116 5xzr:A (2.8) BS01 8J6 3.1.3.48 GO:0000077 ... Q06124 29155585
    428117 5xzu:A (1.7) BS01 BGC 3.2.1.8 GO:0004553 ... D0QF43 29930705
    428118 5xzu:A (1.7) BS02 BGC 3.2.1.8 GO:0004553 ... D0QF43 29930705
    428119 5xzv:A (3.1) BS01 ANP 2.7.12.1 GO:0004672 ... P22216 28858528
    428120 5xzv:B (3.1) BS01 ANP 2.7.12.1 GO:0004672 ... P22216 28858528
    428121 5xzx:A (3.0) BS01 peptide ? N/A O00629 28760339
    428122 5y02:A (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    428123 5y02:C (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    428124 5y02:F (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    428125 5y02:I (1.8) BS01 HBX ? N/A A0A1L7NZN4 29155493
    428126 5y02:K (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    428127 5y02:L (1.8) BS01 HBX ? N/A A0A1L7NZN4 29155493
    428128 5y05:A (2.799) BS01 ZN ? GO:0046872 ... A0R095 29497021
    428129 5y06:A (2.606) BS01 ZN ? GO:0046872 ... A0R095 29497021
    428130 5y07:A (2.07) BS01 PRP 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    428131 5y07:B (2.07) BS01 PRP 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    428132 5y07:B (2.07) BS02 PRP 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    428133 5y0c:A (2.087) BS01 dna ? GO:0000786 ... P68431 30053102
    428134 5y0c:A (2.087) BS02 dna ? GO:0000786 ... P68431 30053102
    428135 5y0c:B (2.087) BS01 dna ? GO:0000781 ... P62805 30053102
    428136 5y0c:B (2.087) BS02 dna ? GO:0000781 ... P62805 30053102
    428137 5y0c:C (2.087) BS01 dna ? GO:0000786 ... P04908 30053102
    428138 5y0c:C (2.087) BS02 dna ? GO:0000786 ... P04908 30053102
    428139 5y0c:D (2.087) BS01 dna ? GO:0000786 ... P06899 30053102
    428140 5y0c:D (2.087) BS02 dna ? GO:0000786 ... P06899 30053102
    428141 5y0c:E (2.087) BS01 dna ? GO:0000786 ... P68431 30053102
    428142 5y0c:E (2.087) BS02 dna ? GO:0000786 ... P68431 30053102
    428143 5y0c:F (2.087) BS01 dna ? GO:0000781 ... P62805 30053102
    428144 5y0c:F (2.087) BS02 dna ? GO:0000781 ... P62805 30053102
    428145 5y0c:G (2.087) BS01 dna ? GO:0000786 ... P04908 30053102
    428146 5y0c:G (2.087) BS02 dna ? GO:0000786 ... P04908 30053102
    428147 5y0c:H (2.087) BS01 dna ? GO:0000786 ... P06899 30053102
    428148 5y0c:H (2.087) BS02 dna ? GO:0000786 ... P06899 30053102
    428149 5y0d:A (1.99) BS01 dna ? GO:0000786 ... P68431 30053102
    428150 5y0d:A (1.99) BS02 dna ? GO:0000786 ... P68431 30053102
    428151 5y0d:B (1.99) BS01 dna ? GO:0000781 ... P62805 30053102
    428152 5y0d:B (1.99) BS02 dna ? GO:0000781 ... P62805 30053102
    428153 5y0d:C (1.99) BS01 dna ? GO:0000786 ... P04908 30053102
    428154 5y0d:C (1.99) BS02 dna ? GO:0000786 ... P04908 30053102
    428155 5y0d:D (1.99) BS01 dna ? GO:0000786 ... P06899 30053102
    428156 5y0d:D (1.99) BS02 dna ? GO:0000786 ... P06899 30053102
    428157 5y0d:E (1.99) BS01 dna ? GO:0000786 ... P68431 30053102
    428158 5y0d:E (1.99) BS02 dna ? GO:0000786 ... P68431 30053102
    428159 5y0d:F (1.99) BS01 dna ? GO:0000781 ... P62805 30053102
    428160 5y0d:F (1.99) BS02 dna ? GO:0000781 ... P62805 30053102
    428161 5y0d:G (1.99) BS01 dna ? GO:0000786 ... P04908 30053102
    428162 5y0d:G (1.99) BS02 dna ? GO:0000786 ... P04908 30053102
    428163 5y0d:H (1.99) BS01 dna ? GO:0000786 ... P06899 30053102
    428164 5y0d:H (1.99) BS02 dna ? GO:0000786 ... P06899 30053102
    428165 5y0f:A (1.54) BS01 8JO ? GO:0005324 ... P15090 29775936 MOAD: Ki=0.21uM
    BindingDB: IC50=1690nM, Ki=210nM
    428166 5y0g:A (1.542) BS01 8JL ? GO:0005324 ... P15090 29775936 MOAD: Ki=0.2uM
    BindingDB: IC50=1650nM, Kd=1.4nM, Ki=200nM
    428167 5y0n:A (2.302) BS01 ATP 6.3.4.- GO:0000049 ... O34513 30150682
    428168 5y0n:B (2.302) BS01 ATP 6.3.4.- GO:0000049 ... O34513 30150682
    428169 5y0p:A (2.3) BS01 TAT 6.3.4.- GO:0000049 ... O34513 30150682
    428170 5y0p:B (2.3) BS01 TAT 6.3.4.- GO:0000049 ... O34513 30150682
    428171 5y0q:A (2.1) BS01 APC 6.3.4.- GO:0000049 ... O34513 30150682
    428172 5y0q:B (2.1) BS01 APC 6.3.4.- GO:0000049 ... O34513 30150682
    428173 5y0t:A (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    428174 5y0t:B (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    428175 5y0t:C (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    428176 5y0t:D (1.9) BS01 TAT 6.3.4.- GO:0000049 ... Q9X1K1 30150682
    428177 5y0u:A (-1.00) BS01 ZN ? N/A Q6ZN18 29134516
    428178 5y0u:A (-1.00) BS02 ZN ? N/A Q6ZN18 29134516
    428179 5y0u:A (-1.00) BS03 ZN ? N/A Q6ZN18 29134516
    428180 5y0v:A (2.423) BS01 BER 3.2.1.52 GO:0000272 ... Q06GJ0 30135205 MOAD: Ki=12uM
    428181 5y0x:A (1.604) BS01 8JR ? GO:0005324 ... P15090 29775936 MOAD: Ki=7.75uM
    BindingDB: Kd=6.0nM, Ki=7750nM
    428182 5y0z:A (2.0) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29685974
    428183 5y0z:A (2.0) BS02 8K9 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29685974 MOAD: ic50=0.46uM
    428184 5y0z:B (2.0) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29685974
    428185 5y0z:B (2.0) BS02 8K9 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29685974 MOAD: ic50=0.46uM
    428186 5y12:A (1.75) BS01 8JX ? GO:0005324 ... P15090 29775936 MOAD: Ki=0.59uM
    BindingDB: Ki=590nM
    428187 5y13:A (1.75) BS01 8K0 ? GO:0005324 ... P15090 29775936 MOAD: Ki=1.16uM
    BindingDB: Ki=1160nM
    428188 5y14:A (1.762) BS01 peptide ? N/A Q1HMR5 28659478
    428189 5y14:A (1.762) BS02 peptide ? N/A Q1HMR5 28659478
    428190 5y14:B (1.762) BS01 peptide ? N/A Q1HMR5 28659478
    428191 5y14:B (1.762) BS02 peptide ? N/A Q1HMR5 28659478
    428192 5y14:C (1.762) BS01 peptide ? N/A Q1HMR5 28659478
    428193 5y14:C (1.762) BS02 peptide ? N/A Q1HMR5 28659478
    428194 5y17:A (2.3) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428195 5y17:A (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428196 5y17:A (2.3) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428197 5y17:B (2.3) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428198 5y17:B (2.3) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428199 5y17:B (2.3) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428200 5y17:C (2.3) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).