SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    428201 5y17:C (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428202 5y17:D (2.3) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428203 5y17:D (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    428204 5y18:A (2.202) BS01 peptide ? N/A Q9UER7 28875424
    428205 5y19:A (1.83) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428206 5y19:A (1.83) BS02 8KO 3.4.11.- GO:0006508 ... O96935 N/A
    428207 5y1b:A (2.207) BS01 8KL 3.2.1.52 GO:0000272 ... Q06GJ0 30135205 MOAD: Ki=8.5uM
    428208 5y1e:A (1.9) BS01 NAD ? GO:0000166 ... D6PBM7 28992410
    428209 5y1e:A (1.9) BS02 SER ? GO:0000166 ... D6PBM7 28992410
    428210 5y1f:A (1.25) BS01 NAD ? GO:0000166 ... D6PBM7 28992410
    428211 5y1g:A (1.35) BS01 AKB ? GO:0000166 ... D6PBM7 28992410
    428212 5y1g:A (1.35) BS02 NAD ? GO:0000166 ... D6PBM7 28992410
    428213 5y1h:A (1.73) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428214 5y1h:A (1.73) BS02 E8C 3.4.11.- GO:0006508 ... O96935 N/A
    428215 5y1i:A (2.0) BS01 HEM ? GO:0004497 ... E0D207 28869713
    428216 5y1i:B (2.0) BS01 HEM ? GO:0004497 ... E0D207 28869713
    428217 5y1j:A (2.0) BS01 peptide ? GO:0003677 ... Q96RI1 N/A
    428218 5y1j:A (2.0) BS02 D5H ? GO:0003677 ... Q96RI1 N/A
    428219 5y1k:A (1.81) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428220 5y1k:A (1.81) BS02 B1B 3.4.11.- GO:0006508 ... O96935 N/A
    428221 5y1q:A (2.14) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428222 5y1q:A (2.14) BS02 8L0 3.4.11.- GO:0006508 ... O96935 N/A
    428223 5y1r:A (1.69) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428224 5y1r:A (1.69) BS02 8KR 3.4.11.- GO:0006508 ... O96935 N/A
    428225 5y1s:A (1.66) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428226 5y1s:A (1.66) BS02 E8F 3.4.11.- GO:0006508 ... O96935 N/A
    428227 5y1s:A (1.66) BS03 E8R 3.4.11.- GO:0006508 ... O96935 N/A
    428228 5y1t:A (2.14) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428229 5y1t:A (2.14) BS02 E8G 3.4.11.- GO:0006508 ... O96935 N/A
    428230 5y1u:A (2.141) BS01 peptide ? GO:0000118 ... Q09028 29134516
    428231 5y1u:B (2.141) BS01 peptide ? GO:0000118 ... Q09028 29134516
    428232 5y1v:A (1.62) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428233 5y1v:A (1.62) BS02 8LO 3.4.11.- GO:0006508 ... O96935 N/A
    428234 5y1w:A (1.56) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428235 5y1x:A (1.55) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428236 5y1x:A (1.55) BS02 BB2 3.4.11.- GO:0006508 ... O96935 N/A
    428237 5y1y:A (1.912) BS01 HNQ ? N/A O60885 29087414 MOAD: ic50=0.98uM
    BindingDB: IC50=980nM
    428238 5y1z:C (2.676) BS01 ZN ? GO:0006355 ... Q9ULU4 28966017
    428239 5y1z:C (2.676) BS02 ZN ? GO:0006355 ... Q9ULU4 28966017
    428240 5y1z:C (2.676) BS03 ZN ? GO:0006355 ... Q9ULU4 28966017
    428241 5y1z:D (2.676) BS01 ZN ? GO:0006355 ... Q9ULU4 28966017
    428242 5y1z:D (2.676) BS02 ZN ? GO:0006355 ... Q9ULU4 28966017
    428243 5y1z:D (2.676) BS03 ZN ? GO:0006355 ... Q9ULU4 28966017
    428244 5y20:A (2.409) BS01 peptide ? GO:0006355 ... Q9FFF5 29386129
    428245 5y20:A (2.409) BS02 ZN ? GO:0006355 ... Q9FFF5 29386129
    428246 5y20:A (2.409) BS03 ZN ? GO:0006355 ... Q9FFF5 29386129
    428247 5y21:A (1.769) BS01 peptide ? GO:0006355 ... Q9SRM4 30176245
    428248 5y21:A (1.769) BS02 peptide ? GO:0006355 ... Q9SRM4 30176245
    428249 5y21:B (1.769) BS01 peptide ? GO:0006355 ... Q9SRM4 30176245
    428250 5y21:B (1.769) BS02 peptide ? GO:0006355 ... Q9SRM4 30176245
    428251 5y23:A (1.4) BS01 CU ? GO:0005507 ... P19567 N/A
    428252 5y23:B (1.4) BS01 CU ? GO:0005507 ... P19567 N/A
    428253 5y24:A (1.922) BS01 peptide ? GO:0098689 ... O64094 30224798
    428254 5y24:B (1.922) BS01 peptide ? GO:0098689 ... O64094 30224798
    428255 5y25:A (3.102) BS01 8LU 2.7.10.1 GO:0004672 ... P00533 30643284
    428256 5y28:A (3.08607) BS01 peptide 3.4.21.107 GO:0004252 ... G2J5T2 30936204
    428257 5y2d:A (3.7001) BS01 peptide 3.4.21.107 GO:0004252 ... G2J5T2 30936204
    428258 5y2f:A (2.53) BS01 peptide 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 30374165
    428259 5y2f:A (2.53) BS02 AR6 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 30374165
    428260 5y2f:A (2.53) BS03 8L9 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 30374165 BindingDB: EC50=5700nM
    428261 5y2f:A (2.53) BS04 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 30374165
    428262 5y2f:A (2.53) BS05 HDR 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 30374165
    428263 5y2g:A (3.0) BS01 GLC ? GO:0005515 ... P09879
    P0AEX9
    31373576
    428264 5y2g:A (3.0) BS02 GLC ? GO:0005515 ... P09879
    P0AEX9
    31373576
    428265 5y2i:B (1.917) BS01 8KX 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A BindingDB: IC50=13100nM, Ki=3910nM
    428266 5y2o:A (1.801) BS01 8N6 ? GO:0003677 ... P37231 29203903 BindingDB: EC50=3470nM
    428267 5y2p:A (1.5) BS01 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    428268 5y2p:A (1.5) BS02 OXY 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    428269 5y2p:A (1.5) BS03 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    428270 5y2p:B (1.5) BS01 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    428271 5y2p:B (1.5) BS02 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    428272 5y2p:B (1.5) BS03 OXY 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    428273 5y2q:A (2.363) BS01 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428274 5y2q:A (2.363) BS02 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428275 5y2q:B (2.363) BS01 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428276 5y2q:B (2.363) BS02 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428277 5y2q:C (2.363) BS01 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428278 5y2q:C (2.363) BS02 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428279 5y2q:D (2.363) BS01 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428280 5y2q:D (2.363) BS02 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428281 5y2q:E (2.363) BS01 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428282 5y2q:E (2.363) BS02 8L3 ? GO:0004888 ... P58154 N/A BindingDB: Ki=72nM, IC50=106nM
    428283 5y2r:A (1.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29354275
    428284 5y2s:A (0.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29354275
    428285 5y2t:A (1.7) BS01 8LX ? GO:0003677 ... P37231 29203903
    428286 5y2t:B (1.7) BS01 8LX ? GO:0003677 ... P37231 29203903
    428287 5y2u:B (1.98) BS01 AZN 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A BindingDB: IC50=2300nM
    428288 5y2u:C (1.98) BS01 AZN 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A BindingDB: IC50=2300nM
    428289 5y2v:A (2.6) BS01 AKG ? GO:0000976 ... P73862 29279392
    428290 5y2v:B (2.6) BS01 AKG ? GO:0000976 ... P73862 29279392
    428291 5y2v:C (2.6) BS01 AKG ? GO:0000976 ... P73862 29279392
    428292 5y2v:D (2.6) BS01 AKG ? GO:0000976 ... P73862 29279392
    428293 5y2w:A (2.2) BS01 PGA ? N/A P73862 29279392 MOAD: Kd=0.43mM
    428294 5y2y:A (2.27) BS01 8LL 3.8.1.5 GO:0003824 ... P0A3G3 28766590
    428295 5y2y:B (2.27) BS01 8LL 3.8.1.5 GO:0003824 ... P0A3G3 28766590
    428296 5y2z:A (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428297 5y2z:A (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428298 5y2z:A (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428299 5y2z:B (2.67) BS01 CA ? N/A O95970 29670100
    428300 5y2z:C (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428301 5y2z:C (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428302 5y2z:C (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428303 5y2z:D (2.67) BS01 CA ? N/A O95970 29670100
    428304 5y2z:E (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428305 5y2z:E (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428306 5y2z:E (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428307 5y2z:F (2.67) BS01 CA ? N/A O95970 29670100
    428308 5y2z:G (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428309 5y2z:G (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428310 5y2z:G (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428311 5y2z:H (2.67) BS01 CA ? N/A O95970 29670100
    428312 5y2z:I (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428313 5y2z:I (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428314 5y2z:I (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428315 5y2z:J (2.67) BS01 FUC ? N/A O95970 29670100
    428316 5y2z:J (2.67) BS02 CA ? N/A O95970 29670100
    428317 5y2z:K (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428318 5y2z:K (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428319 5y2z:K (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428320 5y2z:L (2.67) BS01 CA ? N/A O95970 29670100
    428321 5y31:A (7.125) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428322 5y31:A (7.125) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428323 5y31:A (7.125) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428324 5y31:B (7.125) BS01 CA ? GO:0005102 ... O95970 29670100
    428325 5y31:C (7.125) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    428326 5y31:C (7.125) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    428327 5y31:C (7.125) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    428328 5y31:D (7.125) BS01 CA ? GO:0005102 ... O95970 29670100
    428329 5y32:B (2.701) BS01 FUC 3.2.2.6 N/A P59823 25908590
    428330 5y34:A (1.32) BS01 FCO 1.12.5.1 GO:0008901 ... F2Z6J6 22002607
    428331 5y34:A (1.32) BS02 O 1.12.5.1 GO:0008901 ... F2Z6J6 22002607
    428332 5y34:A (1.32) BS03 MG 1.12.5.1 GO:0008901 ... F2Z6J6 22002607
    428333 5y34:B (1.32) BS01 SF3 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    428334 5y34:B (1.32) BS02 F3S 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    428335 5y34:B (1.32) BS03 SF4 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    428336 5y34:C (1.32) BS01 MG 1.12.5.1 GO:0008901 ... F2Z6J6 22002607
    428337 5y34:C (1.32) BS02 FCO 1.12.5.1 GO:0008901 ... F2Z6J6 22002607
    428338 5y34:C (1.32) BS03 O 1.12.5.1 GO:0008901 ... F2Z6J6 22002607
    428339 5y34:D (1.32) BS01 SF3 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    428340 5y34:D (1.32) BS02 F3S 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    428341 5y34:D (1.32) BS03 SF4 1.12.99.6 GO:0008901 ... A0A066ZR71 22002607
    428342 5y35:C (1.994) BS01 8LF 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    428343 5y36:A (5.2) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    428344 5y36:A (5.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    428345 5y36:A (5.2) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    428346 5y36:A (5.2) BS04 MG 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    428347 5y36:A (5.2) BS05 MG 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    428348 5y37:A (1.36) BS01 NAD 1.2.1.- GO:0000166 ... Q8E3E8 29633972
    428349 5y37:B (1.36) BS01 NAD 1.2.1.- GO:0000166 ... Q8E3E8 29633972
    428350 5y3e:A (1.65) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0006508 ... P0C6U8 29289665
    428351 5y3i:A (1.73) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    428352 5y3i:A (1.73) BS02 8N3 3.4.11.- GO:0006508 ... O96935 N/A
    428353 5y3j:A (1.81) BS01 dna ? GO:0002224 ... Q2EEY0 29625894
    428354 5y3j:A (1.81) BS02 dna ? GO:0002224 ... Q2EEY0 29625894
    428355 5y3j:B (1.81) BS01 dna ? GO:0002224 ... Q2EEY0 29625894
    428356 5y3j:B (1.81) BS02 dna ? GO:0002224 ... Q2EEY0 29625894
    428357 5y3k:A (2.7) BS01 dna ? GO:0002224 ... Q2EEY0 29625894
    428358 5y3k:A (2.7) BS02 dna ? GO:0002224 ... Q2EEY0 29625894
    428359 5y3k:B (2.7) BS01 dna ? GO:0002224 ... Q2EEY0 29625894
    428360 5y3k:B (2.7) BS02 dna ? GO:0002224 ... Q2EEY0 29625894
    428361 5y3l:A (2.6) BS01 dna ? GO:0002224 ... Q2EEY0 29625894
    428362 5y3l:A (2.6) BS02 dna ? GO:0002224 ... Q2EEY0 29625894
    428363 5y3l:B (2.6) BS01 dna ? GO:0002224 ... Q2EEY0 29625894
    428364 5y3l:B (2.6) BS02 dna ? GO:0002224 ... Q2EEY0 29625894
    428365 5y3m:A (2.5) BS01 dna ? GO:0002224 ... Q5I2M5 29625894
    428366 5y3m:A (2.5) BS02 dna ? GO:0002224 ... Q5I2M5 29625894
    428367 5y3m:A (2.5) BS03 dna ? GO:0002224 ... Q5I2M5 29625894
    428368 5y3m:B (2.5) BS01 dna ? GO:0002224 ... Q5I2M5 29625894
    428369 5y3m:B (2.5) BS02 dna ? GO:0002224 ... Q5I2M5 29625894
    428370 5y3m:B (2.5) BS03 dna ? GO:0002224 ... Q5I2M5 29625894
    428371 5y3m:B (2.5) BS04 dna ? GO:0002224 ... Q5I2M5 29625894
    428372 5y3n:A (2.4) BS01 8MF ? GO:0005524 ... Q12931 28816449 MOAD: ic50=0.079uM
    BindingDB: IC50=79nM
    428373 5y3o:A (2.7) BS01 8M9 ? GO:0005524 ... Q12931 28816449 BindingDB: IC50=138nM
    428374 5y3q:A (1.65) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0006508 ... P0C6U8 29289665
    428375 5y3r:A (6.6) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 28840859
    428376 5y3r:A (6.6) BS02 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 28840859
    428377 5y3r:B (6.6) BS01 dna 3.6.4.- GO:0000723 ... P13010 28840859
    428378 5y3r:B (6.6) BS02 dna 3.6.4.- GO:0000723 ... P13010 28840859
    428379 5y3r:C (6.6) BS01 peptide 2.7.11.1 GO:0000460 ... P78527 28840859
    428380 5y3r:C (6.6) BS02 dna 2.7.11.1 GO:0000460 ... P78527 28840859
    428381 5y3r:C (6.6) BS03 dna 2.7.11.1 GO:0000460 ... P78527 28840859
    428382 5y3z:A (2.0) BS01 ARG ? N/A P55892 29576320
    428383 5y3z:A (2.0) BS02 ARG ? N/A P55892 29576320
    428384 5y3z:B (2.0) BS01 ARG ? N/A P55892 29576320
    428385 5y41:A (2.05) BS01 RPG ? GO:0003677 ... P43354 32451509
    428386 5y41:B (2.05) BS01 RPG ? GO:0003677 ... P43354 32451509
    428387 5y44:A (2.35) BS01 peptide ? GO:0003677 ... Q96RI1 N/A
    428388 5y44:A (2.35) BS02 XD4 ? GO:0003677 ... Q96RI1 N/A
    428389 5y48:A (1.7) BS01 URA 3.2.2.22 GO:0000166 ... D9J2T9 30007053
    428390 5y49:A (2.4) BS01 peptide ? GO:0003677 ... Q96RI1 N/A
    428391 5y49:A (2.4) BS02 XD5 ? GO:0003677 ... Q96RI1 N/A
    428392 5y49:B (2.4) BS01 peptide ? GO:0003677 ... Q96RI1 N/A
    428393 5y49:B (2.4) BS02 XD5 ? GO:0003677 ... Q96RI1 N/A
    428394 5y4c:A (2.701) BS01 CU ? N/A Q25C86 28919419
    428395 5y4h:A (2.6) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 29184120
    428396 5y4h:A (2.6) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29184120
    428397 5y4h:A (2.6) BS03 8QF 2.3.1.286 GO:0017136 ... Q9NTG7 29184120
    428398 5y4i:A (1.91) BS01 MG 5.3.1.5 GO:0000287 ... P24300 28865958
    428399 5y4i:A (1.91) BS02 GOL 5.3.1.5 GO:0000287 ... P24300 28865958
    428400 5y4j:A (1.4) BS01 MG 5.3.1.5 GO:0000287 ... P24300 28865958

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).