SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    431401 5y6p:v8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431402 5y6p:v9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431403 5y6p:v9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431404 5y6p:v9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431405 5y6p:v9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431406 5y6p:w2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431407 5y6p:w2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431408 5y6p:w2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431409 5y6p:w2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431410 5y6p:w3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431411 5y6p:w3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431412 5y6p:w4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431413 5y6p:w4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431414 5y6p:w4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431415 5y6p:w4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431416 5y6p:w5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431417 5y6p:w5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431418 5y6p:w5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431419 5y6p:w5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431420 5y6p:w6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431421 5y6p:w6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431422 5y6p:w7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431423 5y6p:w7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431424 5y6p:w8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431425 5y6p:w8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431426 5y6p:w8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431427 5y6p:w8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431428 5y6p:w9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431429 5y6p:w9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431430 5y6p:x2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431431 5y6p:x2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431432 5y6p:x2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431433 5y6p:x2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431434 5y6p:x3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431435 5y6p:x3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431436 5y6p:x3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431437 5y6p:x3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431438 5y6p:x4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431439 5y6p:x4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431440 5y6p:x4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431441 5y6p:x5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431442 5y6p:x5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431443 5y6p:x5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431444 5y6p:x6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431445 5y6p:x6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431446 5y6p:x6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431447 5y6p:x6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431448 5y6p:x7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431449 5y6p:x7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431450 5y6p:x7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431451 5y6p:x7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431452 5y6p:x8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431453 5y6p:x8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431454 5y6p:x9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431455 5y6p:x9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431456 5y6p:x9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431457 5y6p:y2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431458 5y6p:y2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431459 5y6p:y2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431460 5y6p:y2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431461 5y6p:y3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431462 5y6p:y3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431463 5y6p:y4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431464 5y6p:y4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431465 5y6p:y5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431466 5y6p:y5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431467 5y6p:y6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431468 5y6p:y6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431469 5y6p:y6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431470 5y6p:y6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431471 5y6p:y7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431472 5y6p:y7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431473 5y6p:y7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431474 5y6p:y7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431475 5y6p:y8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431476 5y6p:y8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431477 5y6p:y8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431478 5y6p:y8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431479 5y6p:y9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431480 5y6p:y9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431481 5y6p:y9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431482 5y6p:z2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431483 5y6p:z2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431484 5y6p:z2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431485 5y6p:z2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431486 5y6p:z3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431487 5y6p:z3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431488 5y6p:z3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431489 5y6p:z3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    431490 5y6p:z4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431491 5y6p:z4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431492 5y6p:z4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431493 5y6p:z5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431494 5y6p:z5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431495 5y6p:z5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431496 5y6p:z6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431497 5y6p:z6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431498 5y6p:z6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431499 5y6p:z6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431500 5y6p:z7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431501 5y6p:z7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431502 5y6p:z7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431503 5y6p:z7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431504 5y6p:z8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431505 5y6p:z8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431506 5y6p:z8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431507 5y6p:z9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    431508 5y6p:z9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    431509 5y6p:z9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    431510 5y6p:z9 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    431511 5y6q:A (2.5) BS01 FES ? GO:0016491 ... Q84IY0 29319807
    431512 5y6q:A (2.5) BS02 FES ? GO:0016491 ... Q84IY0 29319807
    431513 5y6q:A (2.5) BS03 MCN ? GO:0016491 ... Q84IY0 29319807
    431514 5y6q:B (2.5) BS01 FAD ? GO:0000166 ... Q84IX9 29319807
    431515 5y6q:B (2.5) BS02 SF4 ? GO:0000166 ... Q84IX9 29319807
    431516 5y6q:C (2.5) BS01 MCN ? GO:0005506 ... Q84IX8 29319807
    431517 5y6z:A (2.5) BS01 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... L7WS61 29164396
    431518 5y6z:A (2.5) BS02 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... L7WS61 29164396
    431519 5y6z:E (2.5) BS01 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... L7WS61 29164396
    431520 5y6z:E (2.5) BS02 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... L7WS61 29164396
    431521 5y72:A (1.65) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    431522 5y72:B (1.65) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    431523 5y77:A (1.6) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 29208702
    431524 5y77:A (1.6) BS02 KYN 1.14.13.9 GO:0003824 ... Q84HF5 29208702
    431525 5y77:B (1.6) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 29208702
    431526 5y77:B (1.6) BS02 KYN 1.14.13.9 GO:0003824 ... Q84HF5 29208702
    431527 5y78:A (2.1) BS01 PO4 ? N/A B5AJT1 28970497
    431528 5y78:B (2.1) BS01 PO4 ? N/A B5AJT1 28970497
    431529 5y7a:A (1.846) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 29208702
    431530 5y7a:A (1.846) BS02 KYN 1.14.13.9 GO:0003824 ... Q84HF5 29208702
    431531 5y7c:A (2.003) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    431532 5y7c:A (2.003) BS02 8O0 ? GO:0004659 ... V5TDY7 29178634
    431533 5y7c:B (2.003) BS01 DST ? GO:0004659 ... V5TDY7 29178634
    431534 5y7c:B (2.003) BS02 8O0 ? GO:0004659 ... V5TDY7 29178634
    431535 5y7f:A (1.35) BS01 UDP ? GO:0000166 ... A0A2D0TCJ6 28939828
    431536 5y7f:A (1.35) BS02 CA ? GO:0000166 ... A0A2D0TCJ6 28939828
    431537 5y7g:A (3.4) BS01 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431538 5y7g:A (3.4) BS02 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431539 5y7g:A (3.4) BS03 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431540 5y7g:A (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431541 5y7g:A (3.4) BS05 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431542 5y7g:B (3.4) BS01 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431543 5y7g:B (3.4) BS02 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431544 5y7g:B (3.4) BS03 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431545 5y7g:B (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431546 5y7g:B (3.4) BS05 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431547 5y7g:C (3.4) BS01 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431548 5y7g:C (3.4) BS02 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431549 5y7g:C (3.4) BS03 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431550 5y7g:C (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431551 5y7h:A (3.0) BS01 8O3 3.4.14.5 GO:0001618 ... P27487 29061303
    431552 5y7h:A (3.0) BS02 8O3 3.4.14.5 GO:0001618 ... P27487 29061303
    431553 5y7h:B (3.0) BS01 8O3 3.4.14.5 GO:0001618 ... P27487 29061303
    431554 5y7h:B (3.0) BS02 8O3 3.4.14.5 GO:0001618 ... P27487 29061303
    431555 5y7j:A (2.521) BS01 8OL 3.4.14.5 GO:0001618 ... P27487 29061303
    431556 5y7j:B (2.521) BS01 8OL 3.4.14.5 GO:0001618 ... P27487 29061303
    431557 5y7j:C (2.521) BS01 8OL 3.4.14.5 GO:0001618 ... P27487 29061303
    431558 5y7j:D (2.521) BS01 8OL 3.4.14.5 GO:0001618 ... P27487 29061303
    431559 5y7k:A (2.512) BS01 8VU 3.4.14.5 GO:0001618 ... P27487 29061303 BindingDB: IC50=0.9nM
    431560 5y7k:B (2.512) BS01 8VU 3.4.14.5 GO:0001618 ... P27487 29061303 BindingDB: IC50=0.9nM
    431561 5y7k:C (2.512) BS01 8VU 3.4.14.5 GO:0001618 ... P27487 29061303 BindingDB: IC50=0.9nM
    431562 5y7k:D (2.512) BS01 8VU 3.4.14.5 GO:0001618 ... P27487 29061303 BindingDB: IC50=0.9nM
    431563 5y7m:A (3.1) BS01 rna ? GO:0001682 ... P62009 29372908
    431564 5y7m:A (3.1) BS02 rna ? GO:0001682 ... P62009 29372908
    431565 5y7m:C (3.1) BS01 rna ? GO:0001682 ... P62009 29372908
    431566 5y7m:C (3.1) BS02 rna ? GO:0001682 ... P62009 29372908
    431567 5y7n:A (2.5) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 N/A
    431568 5y7n:A (2.5) BS02 8QL 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 N/A
    431569 5y7p:A (2.1) BS01 GCH ? GO:0006629 ... J7H3P9 N/A
    431570 5y7p:A (2.1) BS02 GCH ? GO:0006629 ... J7H3P9 N/A
    431571 5y7p:F (2.1) BS01 GCH ? GO:0006629 ... J7H3P9 N/A
    431572 5y7q:A (2.7) BS01 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431573 5y7q:A (2.7) BS02 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    431574 5y7r:B (1.96) BS01 FE 1.14.11.81 N/A Q5AR53 29314482
    431575 5y7r:B (1.96) BS02 AKG 1.14.11.81 N/A Q5AR53 29314482
    431576 5y7r:B (1.96) BS03 58K 1.14.11.81 N/A Q5AR53 29314482
    431577 5y7t:B (2.05) BS01 FE 1.14.11.81 N/A Q5AR53 29314482
    431578 5y7t:B (2.05) BS02 8R0 1.14.11.81 N/A Q5AR53 29314482
    431579 5y7t:B (2.05) BS03 AKG 1.14.11.81 N/A Q5AR53 29314482
    431580 5y7w:A (2.25) BS01 peptide 2.3.1.48 GO:0003713 ... P70365 29090910
    431581 5y7w:A (2.25) BS02 peptide 2.3.1.48 GO:0003713 ... P70365 29090910
    431582 5y7w:B (2.25) BS01 peptide 2.3.1.48 GO:0003713 ... P70365 29090910
    431583 5y7w:B (2.25) BS02 peptide 2.3.1.48 GO:0003713 ... P70365 29090910
    431584 5y7x:A (1.699) BS01 8RR ? GO:0003677 ... Q03181 39431021
    431585 5y7x:A (1.699) BS02 JZR ? GO:0003677 ... Q03181 39431021
    431586 5y7x:A (1.699) BS03 JZR ? GO:0003677 ... Q03181 39431021
    431587 5y7x:B (1.699) BS01 JZR ? GO:0003677 ... Q03181 39431021
    431588 5y7x:B (1.699) BS02 8RR ? GO:0003677 ... Q03181 39431021
    431589 5y7x:B (1.699) BS03 JZR ? GO:0003677 ... Q03181 39431021
    431590 5y7z:A (2.804) BS01 IRE 2.7.11.1 GO:0004672 ... O14976 30214852
    431591 5y7z:B (2.804) BS01 IRE 2.7.11.1 GO:0004672 ... O14976 30214852
    431592 5y80:A (2.5) BS01 IRE 2.7.11.1 GO:0004672 ... O14976 30214852 MOAD: Kd=1.62nM
    431593 5y80:A (2.5) BS02 IRE 2.7.11.1 GO:0004672 ... O14976 30214852 MOAD: Kd=1.62nM
    431594 5y84:A (2.0) BS01 8P6 ? GO:0004659 ... V5TDY7 29178634
    431595 5y84:A (2.0) BS02 DST ? GO:0004659 ... V5TDY7 29178634
    431596 5y84:B (2.0) BS01 8P6 ? GO:0004659 ... V5TDY7 29178634
    431597 5y84:B (2.0) BS02 DST ? GO:0004659 ... V5TDY7 29178634
    431598 5y86:A (1.9) BS01 HRM 2.7.12.1 GO:0000242 ... O43781 29634919 MOAD: ic50=0.8uM
    BindingDB: IC50=800nM
    431599 5y88:A (3.46) BS01 rna ? GO:0000244 ... P33334 28919079
    431600 5y88:A (3.46) BS02 rna ? GO:0000244 ... P33334 28919079

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).