SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    431601 5y88:A (3.46) BS03 rna ? GO:0000244 ... P33334 28919079
    431602 5y88:A (3.46) BS04 IHP ? GO:0000244 ... P33334 28919079
    431603 5y88:C (3.46) BS01 rna ? GO:0000244 ... P36048 28919079
    431604 5y88:C (3.46) BS02 GTP ? GO:0000244 ... P36048 28919079
    431605 5y88:C (3.46) BS03 MG ? GO:0000244 ... P36048 28919079
    431606 5y88:I (3.46) BS01 rna ? GO:0000245 ... Q12309 28919079
    431607 5y88:J (3.46) BS01 rna ? GO:0000350 ... Q03654 28919079
    431608 5y88:J (3.46) BS02 rna ? GO:0000350 ... Q03654 28919079
    431609 5y88:K (3.46) BS01 rna ? GO:0000384 ... P53277 28919079
    431610 5y88:K (3.46) BS02 rna ? GO:0000384 ... P53277 28919079
    431611 5y88:L (3.46) BS01 rna ? GO:0000282 ... P25337 28919079
    431612 5y88:L (3.46) BS02 rna ? GO:0000282 ... P25337 28919079
    431613 5y88:L (3.46) BS03 peptide ? GO:0000282 ... P25337 28919079
    431614 5y88:L (3.46) BS04 ZN ? GO:0000282 ... P25337 28919079
    431615 5y88:L (3.46) BS05 ZN ? GO:0000282 ... P25337 28919079
    431616 5y88:L (3.46) BS06 ZN ? GO:0000282 ... P25337 28919079
    431617 5y88:M (3.46) BS01 rna ? GO:0000398 ... P38241 28919079
    431618 5y88:M (3.46) BS02 ZN ? GO:0000398 ... P38241 28919079
    431619 5y88:M (3.46) BS03 ZN ? GO:0000398 ... P38241 28919079
    431620 5y88:N (3.46) BS01 rna ? GO:0000387 ... Q12046 28919079
    431621 5y88:N (3.46) BS02 rna ? GO:0000387 ... Q12046 28919079
    431622 5y88:N (3.46) BS03 ZN ? GO:0000387 ... Q12046 28919079
    431623 5y88:P (3.46) BS01 rna ? GO:0000398 ... Q03772 28919079
    431624 5y88:P (3.46) BS02 rna ? GO:0000398 ... Q03772 28919079
    431625 5y88:P (3.46) BS03 rna ? GO:0000398 ... Q03772 28919079
    431626 5y88:Q (3.46) BS01 rna ? GO:0000350 ... P28004 28919079
    431627 5y88:Q (3.46) BS02 rna ? GO:0000350 ... P28004 28919079
    431628 5y88:W (3.46) BS01 rna 3.6.4.13 GO:0000390 ... P53131 28919079
    431629 5y88:a (3.46) BS01 rna ? GO:0000243 ... P40018 28919079
    431630 5y88:b (3.46) BS01 rna ? GO:0000243 ... Q12330 28919079
    431631 5y88:c (3.46) BS01 rna ? GO:0000243 ... P54999 28919079
    431632 5y88:d (3.46) BS01 rna ? GO:0000243 ... P40204 28919079
    431633 5y88:e (3.46) BS01 rna ? GO:0000243 ... P43321 28919079
    431634 5y88:f (3.46) BS01 rna ? GO:0000243 ... Q02260 28919079
    431635 5y88:g (3.46) BS01 rna ? GO:0000243 ... Q06217 28919079
    431636 5y88:h (3.46) BS01 rna ? GO:0000243 ... P40018 28919079
    431637 5y88:i (3.46) BS01 rna ? GO:0000243 ... Q12330 28919079
    431638 5y88:j (3.46) BS01 rna ? GO:0000243 ... P54999 28919079
    431639 5y88:k (3.46) BS01 rna ? GO:0000243 ... P40204 28919079
    431640 5y88:l (3.46) BS01 rna ? GO:0000243 ... P43321 28919079
    431641 5y88:m (3.46) BS01 rna ? GO:0000243 ... Q02260 28919079
    431642 5y88:n (3.46) BS01 rna ? GO:0000243 ... Q06217 28919079
    431643 5y88:p (3.46) BS01 rna ? GO:0000398 ... P40567 28919079
    431644 5y89:A (2.4) BS01 HEM ? N/A B4EKB3 28913898
    431645 5y89:B (2.4) BS01 HEM ? N/A B4EKB3 28913898
    431646 5y8a:A (2.001) BS01 HEM ? N/A B4EKB3 28913898
    431647 5y8a:A (2.001) BS02 HEM ? N/A B4EKB3 28913898
    431648 5y8a:B (2.001) BS01 HEM ? N/A B4EKB3 28913898
    431649 5y8a:B (2.001) BS02 HEM ? N/A B4EKB3 28913898
    431650 5y8b:A (2.4) BS01 MG ? N/A A5UZ69 28913898
    431651 5y8c:A (1.42) BS01 8P9 ? N/A O60885 29566488 MOAD: ic50=0.16uM
    431652 5y8g:A (2.01) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431653 5y8g:B (2.01) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431654 5y8h:A (2.1) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431655 5y8h:A (2.1) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431656 5y8h:B (2.1) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431657 5y8h:B (2.1) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431658 5y8i:A (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431659 5y8i:B (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431660 5y8j:A (1.86) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431661 5y8j:B (1.86) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431662 5y8k:A (2.04) BS01 SER 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431663 5y8k:A (2.04) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431664 5y8k:B (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431665 5y8l:A (1.85) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431666 5y8l:A (1.85) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431667 5y8l:B (1.85) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431668 5y8l:B (1.85) BS02 HUI 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431669 5y8l:B (1.85) BS03 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431670 5y8l:B (1.85) BS04 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431671 5y8m:A (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431672 5y8m:B (2.04) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431673 5y8m:B (2.04) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431674 5y8n:A (2.68) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431675 5y8n:A (2.68) BS02 SER 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431676 5y8n:A (2.68) BS03 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431677 5y8n:B (2.68) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431678 5y8o:A (2.05) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431679 5y8o:B (2.05) BS01 NAD 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431680 5y8o:B (2.05) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431681 5y8p:A (2.15) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431682 5y8p:B (2.15) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    431683 5y8v:D (2.61) BS01 MG ? GO:0006355 ... O95619 29463709
    431684 5y8w:A (1.76) BS01 8PU ? N/A O60885 29566488 MOAD: ic50=0.23uM
    431685 5y8x:B (1.97) BS01 AZS N/A N/A N/A N/A
    431686 5y8y:A (1.87) BS01 8PX ? N/A O60885 29566488 MOAD: Kd=82nM
    431687 5y8z:A (1.84) BS01 8Q3 ? N/A O60885 29566488 MOAD: ic50=0.62uM
    431688 5y91:A (1.901) BS01 peptide ? N/A Q65XY8 N/A
    431689 5y93:A (1.62) BS01 8Q9 ? N/A O60885 29566488 MOAD: ic50=2.27uM
    431690 5y94:A (2.0) BS01 8QC ? N/A O60885 29566488 MOAD: Kd=164nM
    431691 5y95:A (-1.00) BS01 8TL ? GO:0003714 ... Q62141 28927787
    431692 5y97:C (3.05) BS01 GAL ? N/A U3KRF8 30099481
    431693 5y97:C (3.05) BS02 GAL ? N/A U3KRF8 30099481
    431694 5y9a:A (1.1) BS01 AR3 3.1.1.29 GO:0004045 ... D0C9L6 29301982
    431695 5y9a:A (1.1) BS02 PO4 3.1.1.29 GO:0004045 ... D0C9L6 29301982
    431696 5y9b:B (2.15) BS01 DON 2.3.2.2
    3.4.19.13
    N/A Q65KZ6 N/A
    431697 5y9d:A (2.5) BS01 FAD 1.3.3.6 GO:0003997 ... O74934 29198706
    431698 5y9d:A (2.5) BS02 FAD 1.3.3.6 GO:0003997 ... O74934 29198706
    431699 5y9d:B (2.5) BS01 FAD 1.3.3.6 GO:0003997 ... O74934 29198706
    431700 5y9d:B (2.5) BS02 FAD 1.3.3.6 GO:0003997 ... O74934 29198706
    431701 5y9e:A (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    431702 5y9e:A (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    431703 5y9e:A (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    431704 5y9e:A (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    431705 5y9e:B (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    431706 5y9e:B (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    431707 5y9e:B (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    431708 5y9e:B (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    431709 5y9e:B (2.042) BS05 MG ? GO:0005198 ... P26535 28951471
    431710 5y9e:B (2.042) BS06 MG ? GO:0005198 ... P26535 28951471
    431711 5y9e:B (2.042) BS07 MG ? GO:0005198 ... P26535 28951471
    431712 5y9e:C (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    431713 5y9e:C (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    431714 5y9e:C (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    431715 5y9e:C (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    431716 5y9e:C (2.042) BS05 MG ? GO:0005198 ... P26535 28951471
    431717 5y9e:D (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    431718 5y9e:D (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    431719 5y9e:D (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    431720 5y9e:D (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    431721 5y9e:D (2.042) BS05 MG ? GO:0005198 ... P26535 28951471
    431722 5y9e:D (2.042) BS06 MG ? GO:0005198 ... P26535 28951471
    431723 5y9e:E (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    431724 5y9e:E (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    431725 5y9e:E (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    431726 5y9i:A (1.901) BS01 CO ? GO:0046872 ... B3DUR4 N/A
    431727 5y9l:A (2.15) BS01 8R3 3.4.21.117 GO:0001533 ... P49862 29102227 MOAD: ic50=1.9uM
    431728 5y9m:A (2.006) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 29717996
    431729 5y9m:X (2.006) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 29717996
    431730 5y9t:A (3.25) BS01 8RC 2.7.10.1 GO:0004672 ... P00533 29467275 BindingDB: IC50=1.7nM
    431731 5y9x:A (1.39) BS01 CO ? GO:0046872 ... B3DUR4 N/A
    431732 5y9x:A (1.39) BS02 AKG ? GO:0046872 ... B3DUR4 N/A
    431733 5y9y:A (1.599) BS01 CO ? GO:0046872 ... B3DUR4 N/A
    431734 5y9z:A (1.09) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O35543 N/A
    431735 5y9z:B (1.09) BS01 GSH 2.5.1.18
    5.3.99.2
    GO:0000287 ... O35543 N/A
    431736 5ya1:A (2.701) BS01 ATP 2.7.1.189 GO:0005515 ... P77432 29868643
    431737 5ya1:B (2.701) BS01 ATP 2.7.1.189 GO:0005515 ... P77432 29868643
    431738 5ya2:A (2.701) BS01 ADP 2.7.1.189 GO:0005515 ... P77432 29868643
    431739 5ya2:B (2.701) BS01 ADP 2.7.1.189 GO:0005515 ... P77432 29868643
    431740 5ya5:A (1.89) BS01 6TD 2.7.10.1 GO:0004672 ... P08581 29202410 MOAD: ic50=0.19uM
    BindingDB: IC50=190nM
    431741 5ya6:A (1.5) BS01 CA ? GO:0005198 ... Q58301 30898768
    431742 5ya6:B (1.5) BS01 CA ? GO:0005198 ... Q58301 30898768
    431743 5ya8:A (2.3) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431744 5ya8:A (2.3) BS02 INS ? GO:0000166 ... K7ZP76 29799855
    431745 5ya8:B (2.3) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431746 5ya8:B (2.3) BS02 INS ? GO:0000166 ... K7ZP76 29799855
    431747 5ya8:C (2.3) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431748 5ya8:D (2.3) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431749 5ya8:D (2.3) BS02 INS ? GO:0000166 ... K7ZP76 29799855
    431750 5yak:A (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431751 5yak:A (2.3) BS02 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431752 5yak:A (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431753 5yak:B (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431754 5yak:B (2.3) BS02 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431755 5yak:B (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431756 5yak:B (2.3) BS04 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431757 5yak:C (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431758 5yak:C (2.3) BS02 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431759 5yak:C (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431760 5yak:C (2.3) BS04 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431761 5yak:D (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431762 5yak:D (2.3) BS02 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431763 5yak:D (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431764 5yak:D (2.3) BS04 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431765 5yak:E (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431766 5yak:E (2.3) BS02 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431767 5yak:E (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431768 5yak:E (2.3) BS04 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431769 5yak:F (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431770 5yak:F (2.3) BS02 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431771 5yak:F (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    431772 5yak:F (2.3) BS04 YOF 1.21.1.1 GO:0016491 ... Q6PHW0 30052294 MOAD: Kd=1.5uM
    431773 5yan:A (1.77) BS01 peptide N/A N/A N/A 29844169
    431774 5yan:E (1.77) BS01 peptide N/A N/A N/A 29844169
    431775 5yan:F (1.77) BS01 peptide N/A N/A N/A 29844169
    431776 5yao:A (2.611) BS01 3ZS 3.3.2.8 GO:0016787 ... Q9ZAG3 29232125
    431777 5yap:A (1.8) BS01 NAI ? GO:0000166 ... K7ZP76 29799855
    431778 5yap:A (1.8) BS02 8S0 ? GO:0000166 ... K7ZP76 29799855
    431779 5yap:B (1.8) BS01 NAI ? GO:0000166 ... K7ZP76 29799855
    431780 5yap:B (1.8) BS02 8S0 ? GO:0000166 ... K7ZP76 29799855
    431781 5yap:C (1.8) BS01 NAI ? GO:0000166 ... K7ZP76 29799855
    431782 5yap:C (1.8) BS02 8S0 ? GO:0000166 ... K7ZP76 29799855
    431783 5yap:D (1.8) BS01 NAI ? GO:0000166 ... K7ZP76 29799855
    431784 5yaq:A (1.99) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431785 5yaq:B (1.99) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431786 5yaq:B (1.99) BS02 ISE ? GO:0000166 ... K7ZP76 29799855
    431787 5yaq:C (1.99) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431788 5yaq:C (1.99) BS02 ISE ? GO:0000166 ... K7ZP76 29799855
    431789 5yaq:D (1.99) BS01 NAD ? GO:0000166 ... K7ZP76 29799855
    431790 5yaq:D (1.99) BS02 ISE ? GO:0000166 ... K7ZP76 29799855
    431791 5yas:A (2.2) BS01 FAC 4.1.2.47 GO:0009694 ... P52704 10548044 MOAD: Ki=0.55mM
    431792 5yat:A (1.745) BS01 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    431793 5yat:A (1.745) BS02 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    431794 5yat:B (1.745) BS01 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    431795 5yat:B (1.745) BS02 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    431796 5yav:B (1.989) BS01 8SF ? GO:0005095 ... O43924 N/A
    431797 5yaw:B (2.027) BS01 8SL ? GO:0005095 ... O43924 N/A
    431798 5yax:B (2.5) BS01 peptide N/A N/A N/A 28949917
    431799 5yay:A (1.55) BS01 peptide ? GO:0030837 ... E9Q238 29217769
    431800 5yb0:A (2.94) BS01 PLP 2.6.1.52 GO:0004648 ... Q60I38 30959130

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).