SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    432001 5ybp:A (2.312) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432002 5ybp:A (2.312) BS03 8SX 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432003 5ybp:B (2.312) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432004 5ybp:B (2.312) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432005 5ybp:B (2.312) BS03 8SX 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432006 5ybq:A (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432007 5ybq:A (2.25) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432008 5ybq:A (2.25) BS03 8T0 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432009 5ybq:B (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432010 5ybq:B (2.25) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432011 5ybq:B (2.25) BS03 8T0 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432012 5ybr:A (2.261) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432013 5ybr:A (2.261) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432014 5ybr:A (2.261) BS03 8T9 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432015 5ybr:A (2.261) BS04 8T9 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432016 5ybr:B (2.261) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432017 5ybr:B (2.261) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432018 5ybr:B (2.261) BS03 8T9 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432019 5ybs:A (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432020 5ybs:A (2.3) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432021 5ybs:B (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432022 5ybs:B (2.3) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432023 5ybs:B (2.3) BS03 8TC 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432024 5ybt:A (2.35) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432025 5ybt:A (2.35) BS02 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432026 5ybt:A (2.35) BS03 8TC 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432027 5ybt:A (2.35) BS04 8TC 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432028 5ybt:B (2.35) BS01 8TC 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432029 5ybt:B (2.35) BS02 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432030 5ybt:B (2.35) BS03 AKG 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432031 5ybt:B (2.35) BS04 8TC 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    432032 5ybu:A (1.89) BS01 peptide ? GO:0030837 ... Q14678 29183992
    432033 5ybv:A (2.12) BS01 peptide ? GO:0030837 ... Q63ZY3 29183992
    432034 5ybv:B (2.12) BS01 peptide ? GO:0030837 ... Q63ZY3 29183992
    432035 5yc0:A (2.0) BS01 peptide ? N/A P04578 29425101
    432036 5yc0:B (2.0) BS01 peptide ? N/A P04578 29425101
    432037 5yc0:C (2.0) BS01 peptide ? N/A P04578 29425101
    432038 5yc0:C (2.0) BS02 peptide ? N/A P04578 29425101
    432039 5yc0:D (2.0) BS01 peptide ? N/A P04578 29425101
    432040 5yc0:D (2.0) BS02 peptide ? N/A P04578 29425101
    432041 5yc0:E (2.0) BS01 peptide ? N/A P04578 29425101
    432042 5yc0:F (2.0) BS01 peptide ? N/A P04578 29425101
    432043 5yc0:F (2.0) BS02 peptide ? N/A P04578 29425101
    432044 5yc0:G (2.0) BS01 peptide N/A N/A N/A 29425101
    432045 5yc1:A (2.506) BS01 peptide 2.3.2.27 GO:0007250 ... Q9BUZ4 29073066
    432046 5yc1:D (2.506) BS01 peptide 2.3.2.27 GO:0007250 ... Q9BUZ4 29073066
    432047 5yc1:F (2.506) BS01 peptide 2.3.2.27 GO:0007250 ... Q9BUZ4 29073066
    432048 5yc2:A (2.704) BS01 peptide ? GO:0003677 ... O60158
    Q12306
    30462301
    432049 5yc2:C (2.704) BS01 peptide ? GO:0003677 ... O60158
    Q12306
    30462301
    432050 5yc3:A (2.601) BS01 peptide ? GO:0006355 ... Q9M2B4 29386129
    432051 5yc3:A (2.601) BS02 ZN ? GO:0006355 ... Q9M2B4 29386129
    432052 5yc3:A (2.601) BS03 ZN ? GO:0006355 ... Q9M2B4 29386129
    432053 5yc4:A (2.697) BS01 peptide ? GO:0006355 ... Q9M2B4 29386129
    432054 5yc4:A (2.697) BS02 ZN ? GO:0006355 ... Q9M2B4 29386129
    432055 5yc4:A (2.697) BS03 ZN ? GO:0006355 ... Q9M2B4 29386129
    432056 5yc5:A (2.71) BS01 BMA ? N/A P0DOX5 29500371
    432057 5yc5:A (2.71) BS02 GAL ? N/A P0DOX5 29500371
    432058 5yc5:B (2.71) BS01 BMA ? N/A P0DOX5 29500371
    432059 5yc6:U (1.18) BS01 PZH 3.4.21.73 GO:0004252 ... P00749 N/A
    432060 5yc7:U (2.0) BS01 PZH 3.4.21.73 GO:0004252 ... P00749 N/A
    432061 5yc8:A (2.5) BS01 3C0 ? GO:0004930 ... P08172
    P0ABE7
    30420692 MOAD: Kd=6.4nM
    432062 5yca:A (1.57) BS01 peptide ? GO:0003677 ... O60158
    Q12306
    30462301
    432063 5ycb:A (2.272) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... A0A2R2JFU5 N/A
    432064 5ycb:B (2.272) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... A0A2R2JFU5 N/A
    432065 5ycc:A (2.7) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... A0A2R2JFU5 N/A
    432066 5ycc:B (2.7) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... A0A2R2JFU5 N/A
    432067 5ycd:A (1.8) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... A0A452CSM2 N/A
    432068 5ycd:B (1.8) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... A0A452CSM2 N/A
    432069 5yce:A (0.77) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 30442991
    432070 5ycf:A (1.938) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... M4AA20 N/A
    432071 5ycf:B (1.938) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6
    GO:0004017 ... M4AA20 N/A
    432072 5ycg:A (2.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 30442991
    432073 5ych:A (1.354) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... R9RZK8 30442991
    432074 5yci:A (1.97) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... R9RZK8 30442991
    432075 5yci:B (1.97) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... R9RZK8 30442991
    432076 5ycj:A (1.58) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... R9RZK8 30442991
    432077 5ycj:B (1.58) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... R9RZK8 30442991
    432078 5ycn:A (2.15) BS01 peptide ? GO:0003677 ... P37231 29311579
    432079 5ycn:A (2.15) BS02 8LX ? GO:0003677 ... P37231 29311579
    432080 5yco:A (2.199) BS01 peptide ? GO:0000122 ... P12004 28951215
    432081 5yco:B (2.199) BS01 peptide ? GO:0000122 ... P12004 28951215
    432082 5yco:C (2.199) BS01 peptide ? GO:0000122 ... P12004 28951215
    432083 5ycp:A (2.0) BS01 peptide ? GO:0003677 ... P37231 29311579
    432084 5ycp:A (2.0) BS02 BRL ? GO:0003677 ... P37231 29311579 BindingDB: EC50=40nM, IC50=1.000000nM, Ki=8nM, Kd=0.145000nM
    432085 5ycr:A (1.96) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432086 5ycr:B (1.96) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432087 5ycr:C (1.96) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432088 5ycr:D (1.96) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432089 5ycs:A (1.95) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432090 5ycs:A (1.95) BS02 TCL 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432091 5ycs:B (1.95) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432092 5ycs:B (1.95) BS02 TCL 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432093 5ycs:C (1.95) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432094 5ycs:C (1.95) BS02 TCL 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432095 5ycs:D (1.95) BS01 NAD 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432096 5ycs:D (1.95) BS02 TCL 1.3.1.9 GO:0000166 ... Q81GI3 28935372
    432097 5yd0:A (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    432098 5yd0:B (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    432099 5yd0:C (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    432100 5yd0:D (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    432101 5yd2:A (2.35) BS01 PLP 2.6.1.52 GO:0004648 ... M7XC02 30959130
    432102 5yd2:A (2.35) BS02 PLP 2.6.1.52 GO:0004648 ... M7XC02 30959130
    432103 5yd2:B (2.35) BS01 PLP 2.6.1.52 GO:0004648 ... M7XC02 30959130
    432104 5yd2:B (2.35) BS02 PLP 2.6.1.52 GO:0004648 ... M7XC02 30959130
    432105 5yd3:A (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432106 5yd3:C (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432107 5yd3:E (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432108 5yd3:G (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432109 5yd4:A (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432110 5yd4:C (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432111 5yd4:E (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432112 5yd4:G (1.35) BS01 peptide ? GO:0002250 ... P01630 29924367
    432113 5yd5:A (1.96) BS01 peptide ? GO:0002250 ... P01630 29924367
    432114 5yd5:C (1.96) BS01 peptide ? GO:0002250 ... P01630 29924367
    432115 5yd5:C (1.96) BS02 peptide ? GO:0002250 ... P01630 29924367
    432116 5yd6:A (2.34) BS01 8SU ? GO:0003677 ... P43354 N/A
    432117 5yd6:B (2.34) BS01 8SU ? GO:0003677 ... P43354 N/A
    432118 5yd6:C (2.34) BS01 8SU ? GO:0003677 ... P43354 N/A
    432119 5yd6:D (2.34) BS01 8SU ? GO:0003677 ... P43354 N/A
    432120 5yd7:A (1.7) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    432121 5yd7:A (1.7) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    432122 5yd7:B (1.7) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    432123 5yd7:B (1.7) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    432124 5yd8:X (2.3) BS01 peptide ? GO:0000122 ... P12004 29633969
    432125 5yd8:Y (2.3) BS01 peptide ? GO:0000122 ... P12004 29633969
    432126 5yd8:Z (2.3) BS01 peptide ? GO:0000122 ... P12004 29633969
    432127 5ydb:A (1.76) BS01 DQA 4.2.1.10 GO:0003855 ... A3M692 N/A
    432128 5ydb:B (1.76) BS01 DQA 4.2.1.10 GO:0003855 ... A3M692 N/A
    432129 5ydb:C (1.76) BS01 DQA 4.2.1.10 GO:0003855 ... A3M692 N/A
    432130 5ydb:D (1.76) BS01 DQA 4.2.1.10 GO:0003855 ... A3M692 N/A
    432131 5ydj:B (3.04) BS01 CO 3.1.1.7 GO:0004104 ... Q869C3 N/A
    432132 5ydl:A (2.402) BS01 DUV ? GO:0016740 ... A0A0E3JLZ0 29536601
    432133 5ydm:A (2.5) BS01 DUW ? GO:0016740 ... A0A0E3JLZ0 29536601
    432134 5ydr:B (2.003) BS01 ZN 2.1.1.37 N/A P26358 29471350
    432135 5ydt:U5 (4.5) BS01 rna ? GO:0000462 ... P36144 28951391
    432136 5ydv:A (1.752) BS01 8TR ? N/A Q7CP75 30733296
    432137 5ye3:A (1.7) BS01 peptide N/A N/A N/A 30080437
    432138 5ye3:B (1.7) BS01 peptide N/A N/A N/A 30080437
    432139 5ye4:A (1.799) BS01 peptide N/A N/A N/A 30080437
    432140 5ye4:B (1.799) BS01 peptide N/A N/A N/A 30080437
    432141 5ye4:B (1.799) BS02 ZN N/A N/A N/A 30080437
    432142 5ye4:C (1.799) BS01 peptide N/A N/A N/A 30080437
    432143 5ye4:D (1.799) BS01 peptide N/A N/A N/A 30080437
    432144 5ye7:A (2.312) BS01 8U0 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=3431nM
    BindingDB: IC50=3431nM
    432145 5ye7:B (2.312) BS01 8U0 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=3431nM
    BindingDB: IC50=3431nM
    432146 5ye8:A (1.851) BS01 8U3 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50~1mM
    BindingDB: IC50=1000000nM
    432147 5ye8:B (1.851) BS01 8U3 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50~1mM
    BindingDB: IC50=1000000nM
    432148 5ye9:A (1.876) BS01 8U6 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=355nM
    BindingDB: IC50=355nM
    432149 5ye9:B (1.876) BS01 8U6 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=355nM
    BindingDB: IC50=355nM
    432150 5yea:A (1.805) BS01 8U9 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=5nM
    BindingDB: IC50=5.0nM
    432151 5yea:B (1.805) BS01 8U9 3.1.1.47 GO:0003847 ... Q13093 29193967 MOAD: ic50=5nM
    BindingDB: IC50=5.0nM
    432152 5yec:A (2.147) BS01 ZN ? GO:0008641 ... P38862 29237558
    432153 5yec:A (2.147) BS02 ATP ? GO:0008641 ... P38862 29237558
    432154 5yec:C (2.147) BS01 ZN ? GO:0008641 ... P38862 29237558
    432155 5yec:C (2.147) BS02 ATP ? GO:0008641 ... P38862 29237558
    432156 5yee:B (1.81) BS01 LAB 3.6.4.- GO:0000287 ... P68135 30283132 BindingDB: IC50=8470nM
    432157 5yee:B (1.81) BS02 ATP 3.6.4.- GO:0000287 ... P68135 30283132
    432158 5yef:A (2.807) BS01 dna ? N/A P49711 29076501
    432159 5yef:A (2.807) BS02 dna ? N/A P49711 29076501
    432160 5yef:A (2.807) BS03 ZN ? N/A P49711 29076501
    432161 5yef:A (2.807) BS04 ZN ? N/A P49711 29076501
    432162 5yef:A (2.807) BS05 ZN ? N/A P49711 29076501
    432163 5yef:A (2.807) BS06 ZN ? N/A P49711 29076501
    432164 5yef:A (2.807) BS07 ZN ? N/A P49711 29076501
    432165 5yef:A (2.807) BS08 ZN ? N/A P49711 29076501
    432166 5yef:B (2.807) BS01 dna ? N/A P49711 29076501
    432167 5yef:B (2.807) BS02 dna ? N/A P49711 29076501
    432168 5yef:B (2.807) BS03 ZN ? N/A P49711 29076501
    432169 5yef:B (2.807) BS04 ZN ? N/A P49711 29076501
    432170 5yef:B (2.807) BS05 ZN ? N/A P49711 29076501
    432171 5yef:B (2.807) BS06 ZN ? N/A P49711 29076501
    432172 5yef:B (2.807) BS07 ZN ? N/A P49711 29076501
    432173 5yef:B (2.807) BS08 ZN ? N/A P49711 29076501
    432174 5yef:G (2.807) BS01 dna ? N/A P49711 29076501
    432175 5yef:G (2.807) BS02 dna ? N/A P49711 29076501
    432176 5yef:G (2.807) BS03 ZN ? N/A P49711 29076501
    432177 5yef:G (2.807) BS04 ZN ? N/A P49711 29076501
    432178 5yef:G (2.807) BS05 ZN ? N/A P49711 29076501
    432179 5yef:G (2.807) BS06 ZN ? N/A P49711 29076501
    432180 5yef:G (2.807) BS07 ZN ? N/A P49711 29076501
    432181 5yef:G (2.807) BS08 ZN ? N/A P49711 29076501
    432182 5yef:J (2.807) BS01 dna ? N/A P49711 29076501
    432183 5yef:J (2.807) BS02 dna ? N/A P49711 29076501
    432184 5yef:J (2.807) BS03 ZN ? N/A P49711 29076501
    432185 5yef:J (2.807) BS04 ZN ? N/A P49711 29076501
    432186 5yef:J (2.807) BS05 ZN ? N/A P49711 29076501
    432187 5yef:J (2.807) BS06 ZN ? N/A P49711 29076501
    432188 5yef:J (2.807) BS07 ZN ? N/A P49711 29076501
    432189 5yef:J (2.807) BS08 ZN ? N/A P49711 29076501
    432190 5yeg:A (2.0) BS01 dna ? N/A P49711 29076501
    432191 5yeg:A (2.0) BS02 dna ? N/A P49711 29076501
    432192 5yeg:A (2.0) BS03 dna ? N/A P49711 29076501
    432193 5yeg:A (2.0) BS04 ZN ? N/A P49711 29076501
    432194 5yeg:A (2.0) BS05 ZN ? N/A P49711 29076501
    432195 5yeg:A (2.0) BS06 ZN ? N/A P49711 29076501
    432196 5yeg:A (2.0) BS07 ZN ? N/A P49711 29076501
    432197 5yeg:A (2.0) BS08 ZN ? N/A P49711 29076501
    432198 5yeg:B (2.0) BS01 dna ? N/A P49711 29076501
    432199 5yeg:B (2.0) BS02 dna ? N/A P49711 29076501
    432200 5yeg:B (2.0) BS03 ZN ? N/A P49711 29076501

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).